BAC Information

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BAC

Clone NameB6Ng01-133N14
Chromosome10 (Build37)
Map Location 43,107,876 - 43,232,324
singlet/doubletdoublet
Overlap genePdss2, LOC100042155, AK122525
Upstream geneLace1, Snx3, Nr2e1, c222389, Ostm1, Sec63, Scml4, EG666569, C230040G06, Sobp, 9030612E09Rik
Downstream geneLOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133N14.bB6Ng01-133N14.g
ACCDH934294DH934295
length1,0221,109
definitionDH934294|Mus musculus domesticus DNA, BAC clone: B6Ng01-133N14, 5' end.DH934295|Mus musculus domesticus DNA, BAC clone: B6Ng01-133N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,107,876 - 43,108,431)(43,231,216 - 43,232,324)
sequence
gaattctaggccagctcaaacaaacaaatccacaaatatacaggcaaaca
tcaatatatggctgggctgatccaggcctataatcctagtacttgagatg
ctaaagaagagaataacaattacaaggccaccctagactacatgatgaga
ccttgccttaaaaaatacacacaaagctgaggctacaactcaatggtggt
gtgtgtgcctggcatgctggaggtccttggttcagtccacagcacaacag
aggaaaaaagaaaactttctgtaactgagtatggtggcatatgtccatat
cccagcacttggggtaggcataagaagatcaagagtttaaggtcatcctg
gaatgtaagaagttgaaggtcctgagttcaaattccagcaaccacatggt
agctcacaaccacccataatgaaatctgacgccctcttctagtatgtctg
aagacagctacagtgtatttattgatttatttattatttttattagatta
ttttctttatttacatttcaaatgttatcccctttcctagtttcccatcc
gaaaatcccctatcccctccctacccctgctccccaacccacccactcct
gcttcctggccctggcattcccctatactagggcatagaaccttcacagg
accaagggcctctcctcccattggtgaccaactaggcaatcctctgctac
atatgcagctggagcgatgaatcccaccatgtgttttctttgattggtgg
tttagtcccagggagagttggaggtactagttaattcatattgttgttcc
tcctaaggggctgcaaacccctcagctccatgtgtactttccctagctct
ttcattggagaccctgtgctctgtccagtggatggctgtgagcatccaca
tctgtatttgtcaggcactggcagagcctctcagagaaaacttttatcag
gctcctgtcagcaagctcttgttggcatcagcaatagtttctgggtttgg
tggtgtttatgggatggatccc
gaattcactctgcagactaactagactggcctcaaactccagtggcctct
gcctagagggtgggctaccacatctagtctaaatttgaattttgaatcgt
aagggttagggagggcaccctagccctgtgaagggaccctaccctaccaa
ttctctgatttcacagcttggctaccccccaccccccccaaaactccggc
tgtgccaccagggaacacagaacaaagtcataaatacaaaagaccaaatt
caaggcttctttcttgtggctgggtaggtgtttacgtgtgcaaatgtagg
aaaccactccccactggcataaggtgccggtctgtgggtaccatccgagc
tcctgagcaatgctcagtcccaagggcacccactgctcagcctgcggtga
cccaggtccctgggcagccccaaccctgtcacttctccactttcttggct
ttcttgaggatgtcgcactttttcctgttgggacggcgacaccgctcatc
aatgctaggtatacattcatagtgccacacctcttccatcttctccacgg
ggtagacagcttccacgtaatggcggatgagcctcagcctcgtggggtcc
agctgcttcttgttacaagccccggagtggttgtactgcagtcggaggtt
ctcggtcgtgaagagttccgggaagagcctgaccaggagccgggccgcga
agttgcccaccgacaggctctgctgcacgatctcacgaacctccttgtct
gacagcaggtagggggaaggcaccggaaagtcaggtgaggggaccaccag
ctcgttcaaaggtattttgcaaaagtttttgctgcttcttttaagaggca
gagggggcccctcaaattctcacggaacctctcggggttgattgcgtaac
ttgctaggttccggcactcggggccaggcacatgggaccttgcgttgctg
ctggtaggatcggcgctgcttcgtgtcccttgcgcggacagcgcttcgtc
agctggctacgaactccaagggtccacacgcgggtcgttctttgctctcg
ggtagagacctgccacgtattggcggatcatctgatgcggcccgattcag
ctgcttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_43107876_43108431
seq2: B6Ng01-133N14.b_47_602

seq1  GAATTCTAGGCCAGCTCAAACAAACAAATCCACAAATATACAGGCAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCCAGCTCAAACAAACAAATCCACAAATATACAGGCAAACA  50

seq1  TCAATATATGGCTGGGCTGATCCAGGCCTATAATCCTAGTACTTGAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATATGGCTGGGCTGATCCAGGCCTATAATCCTAGTACTTGAGATG  100

seq1  CTAAAGAAGAGAATAACAATTACAAGGCCACCCTAGACTACATGATGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAAGAGAATAACAATTACAAGGCCACCCTAGACTACATGATGAGA  150

seq1  CCTTGCCTTAAAAAATACACACAAAGCTGAGGCTACAACTCAATGGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTTAAAAAATACACACAAAGCTGAGGCTACAACTCAATGGTGGT  200

seq1  GTGTGTGCCTGGCATGCTGGAGGTCCTTGGTTCAGTCCACAGCACAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCCTGGCATGCTGGAGGTCCTTGGTTCAGTCCACAGCACAACAG  250

seq1  AGGAAAAAAGAAAACTTTCTGTAACTGAGTATGGTGGCATATGTCCATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAGAAAACTTTCTGTAACTGAGTATGGTGGCATATGTCCATAT  300

seq1  CCCAGCACTTGGGGTAGGCATAAGAAGATCAAGAGTTTAAGGTCATCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTTGGGGTAGGCATAAGAAGATCAAGAGTTTAAGGTCATCCTG  350

seq1  GAATGTAAGAAGTTGAAGGTCCTGAGTTCAAATTCCAGCAACCACATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAAGAAGTTGAAGGTCCTGAGTTCAAATTCCAGCAACCACATGGT  400

seq1  AGCTCACAACCACCCATAATGAAATCTGACGCCCTCTTCTAGTATGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACAACCACCCATAATGAAATCTGACGCCCTCTTCTAGTATGTCTG  450

seq1  AAGACAGCTACAGTGTATTTATTGATTTATTTATTATTTTTATTAGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCTACAGTGTATTTATTGATTTATTTATTATTTTTATTAGATTA  500

seq1  TTTTCTTTATTTACATTTCAAATGTTATCCCCTTTCCTAGTTTCCCATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTATTTACATTTCAAATGTTATCCCCTTTCCTAGTTTCCCATCC  550

seq1  GAAAAT  556
      ||||||
seq2  GAAAAT  556

seq1: chr10_43231216_43232324
seq2: B6Ng01-133N14.g_70_1178 (reverse)

seq1  AAGAAGCAGCTGGATCCGGCCCGCATCAGGCTGATCCGCCACTACGT-GC  49
      |||||||||||| || ||| |||||||| | |||||||||| ||||| ||
seq2  AAGAAGCAGCTGAAT-CGGGCCGCATCA-GATGATCCGCCAATACGTGGC  48

seq1  AGCTCCTCTACCCGAGAGCCAAGAACGA-CCGCGTGTGGACCC-TGGAGT  97
      || | |||||||||||||| |||||||| |||||||||||||| ||||||
seq2  AGGT-CTCTACCCGAGAGCAAAGAACGACCCGCGTGTGGACCCTTGGAGT  97

seq1  TCGTAGGCAAGCTGGACG-AGCGCTGTCGGCGC-AGGGACACGGAGCAGC  145
      ||||| || |||| |||| ||||||||| |||| ||||||||| ||||||
seq2  TCGTA-GCCAGCT-GACGAAGCGCTGTCCGCGCAAGGGACACGAAGCAGC  145

seq1  GCCGATCCTACCAGCAGCAACGCAAGGT-CCATGTGCCTGGCCCCGAGTG  194
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCCGATCCTACCAGCAGCAACGCAAGGTCCCATGTGCCTGGCCCCGAGTG  195

seq1  CCGGGACCTAGCAAGTTACGCAATCAACCCCGAGAGGTTCCGTGAGGAGT  244
      |||| |||||||||||||||||||||||||||||||||||||||| || |
seq2  CCGGAACCTAGCAAGTTACGCAATCAACCCCGAGAGGTTCCGTGA-GAAT  244

seq1  TTGAGGGGCCCCCTCTGCCTCCTGAAAGGAGCAGCAAAGACTTTTGCAAA  294
      ||||||||||||||||||||| | |||| ||||||||| |||||||||||
seq2  TTGAGGGGCCCCCTCTGCCTCTTAAAAGAAGCAGCAAAAACTTTTGCAAA  294

seq1  ATACCCTTGGACGAGCTGGTGGTCCCCTCACCTGACTTTCCGGTGCCTTC  344
      ||||| ||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTTGAACGAGCTGGTGGTCCCCTCACCTGACTTTCCGGTGCCTTC  344

seq1  CCCCTACCTGCTGTCAGACAAGGAGGTTCGTGAGATCGTGCAGCAGAGCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACCTGCTGTCAGACAAGGAGGTTCGTGAGATCGTGCAGCAGAGCC  394

seq1  TGTCGGTGGGCAACTTCGCGGCCCGGCTCCTGGTCAGGCTCTTCCCGGAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGGTGGGCAACTTCGCGGCCCGGCTCCTGGTCAGGCTCTTCCCGGAA  444

seq1  CTCTTCACGACCGAGAACCTCCGACTGCAGTACAACCACTCCGGGGCTTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACGACCGAGAACCTCCGACTGCAGTACAACCACTCCGGGGCTTG  494

seq1  TAACAAGAAGCAGCTGGACCCCACGAGGCTGAGGCTCATCCGCCATTACG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGAAGCAGCTGGACCCCACGAGGCTGAGGCTCATCCGCCATTACG  544

seq1  TGGAAGCTGTCTACCCCGTGGAGAAGATGGAAGAGGTGTGGCACTATGAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCTGTCTACCCCGTGGAGAAGATGGAAGAGGTGTGGCACTATGAA  594

seq1  TGTATACCTAGCATTGATGAGCGGTGTCGCCGTCCCAACAGGAAAAAGTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACCTAGCATTGATGAGCGGTGTCGCCGTCCCAACAGGAAAAAGTG  644

seq1  CGACATCCTCAAGAAAGCCAAGAAAGTGGAGAAGTGACAGGGTTGGGGCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACATCCTCAAGAAAGCCAAGAAAGTGGAGAAGTGACAGGGTTGGGGCT  694

seq1  GCCCAGGGACCTGGGTCACCGCAGGCTGAGCAGTGGGTGCCCTTGGGACT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGGACCTGGGTCACCGCAGGCTGAGCAGTGGGTGCCCTTGGGACT  744

seq1  GAGCATTGCTCAGGAGCTCGGATGGTACCCACAGACCGGCACCTTATGCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTGCTCAGGAGCTCGGATGGTACCCACAGACCGGCACCTTATGCC  794

seq1  AGTGGGGAGTGGTTTCCTACATTTGCACACGTAAACACCTACCCAGCCAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGAGTGGTTTCCTACATTTGCACACGTAAACACCTACCCAGCCAC  844

seq1  AAGAAAGAAGCCTTGAATTTGGTCTTTTGTATTTATGACTTTGTTCTGTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAGCCTTGAATTTGGTCTTTTGTATTTATGACTTTGTTCTGTG  894

seq1  TTCCCTGGTGGCACAGCCGGAGTTTTGGGGGGGGTGGGGGGTAGCCAAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGTGGCACAGCCGGAGTTTTGGGGGGGGTGGGGGGTAGCCAAGC  944

seq1  TGTGAAATCAGAGAATTGGTAGGGTAGGGTCCCTTCACAGGGCTAGGGTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATCAGAGAATTGGTAGGGTAGGGTCCCTTCACAGGGCTAGGGTG  994

seq1  CCCTCCCTAACCCTTACGATTCAAAATTCAAATTTAGACTAGATGTGGTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTAACCCTTACGATTCAAAATTCAAATTTAGACTAGATGTGGTA  1044

seq1  GCCCACCCTCTAGGCAGAGGCCACTGGAGTTTGAGGCCAGTCTAGTTAGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCCTCTAGGCAGAGGCCACTGGAGTTTGAGGCCAGTCTAGTTAGT  1094

seq1  CTGCAGAGTGAATTC  1109
      |||||||||||||||
seq2  CTGCAGAGTGAATTC  1109