BAC Information

Click to search

BAC

Clone NameB6Ng01-136N15
Chromosome10 (Build37)X (Build37)
Map Location 65,556,131 - 65,556,62919,659,291 - 19,659,563
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665206, LOC216036
Downstream gene1700023F02Rik, 4930407I19Rik, Reep3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136N15.bB6Ng01-136N15.g
ACCDH936517DH936518
length987267
definitionDH936517|Mus musculus domesticus DNA, BAC clone: B6Ng01-136N15, 5' end.DH936518|Mus musculus domesticus DNA, BAC clone: B6Ng01-136N15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,556,131 - 65,556,629)(19,659,291 - 19,659,563)
sequence
gaattcttttttttttccattttttattaggtatttagctcatttacatt
tccaatgctataccaaaagtcccccatatccacccacccccactcccctg
cccacccactccccctttttggccctggtgttcccctgtactggggcata
taaagtttgcaagtccaatgggcctctctttccagtgatggccgactagg
ccatcttttgatatatatgcagctagagtcaagagctccggggtactggt
tagttcataatgttgttccacctatagagttgcagatccctttagctcct
tggctactttctctagctcctccgttgagagccctatgatccatccatta
gctgactgtgagcatccacttctgtgtttgctaggccccgggatagtctc
acaagaggcagctacatctgggtcctttcaataaaatcttgctagtgtat
gcaatggtgtcagcgtttggatgctgattatggggtggatccctggatat
ggcagtctctacgaggtccatcctttcatctcagctccaaactttgtctc
tgtaactccttccatgggtgttttgttcccaaatctaaggaggggcatag
tgtccacacttcagtcttcattcttcttgagtttcatgtgtttagcaaat
tatatcttatatcttgggtatcctaggtttggggctaatatccacttatc
agtgagtacatattgtgtgagtttctttgtgaatgtgttacctcactcag
gatgatgccctccaggtccatccattttggctaggaatttcataaattca
ttctttttaatagctgagtagtactccaattgtgtagatgtaccacattt
tctgtacccattcctcagtctcaggttccgcgcgattagattgggacagg
cgctgtgttcactcaccagaggtcttaggatctcgtggggagtcccgtgt
gggccttgcgggtgttgggcaagactctgctggcagt
tctatttagatctgtactttgtttgtttgtttgtttgttttttgtttggt
ttggtttggtttggtttggtttggtttggtttggtttggtttggtttttc
gagacagggtttctctgtatagccctggctgtcctggaactcactgtgta
gaccaggttgaccttgattgtgttatttgtttccttgatgtctagttttt
ttttgtttgtttgttttgtttttctttttttttttttttttacatatttt
aaatatcagccctgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_65556131_65556629
seq2: B6Ng01-136N15.b_56_554 (reverse)

seq1  GACTGCCATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACA  50

seq1  CCATTGCATACACTAGCAAGATTTTATTGAAAGGACCCAGATGTAGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCATTGCATACACTAGCAAGATTTTATTGAAAGGACCCAGATGTAGCTGC  100

seq1  CTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCAC  150
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCTTGTGAGACTATCCCGGGGCCTAGCAAACACAGAAGTGGATGCTCAC  150

seq1  AGTCAGCTAATGGATGGATCATAGGGCTCCCAATGGAGGAGCTAGAGAAA  200
      ||||||||||||||||||||||||||||| ||| ||||||||||||||||
seq2  AGTCAGCTAATGGATGGATCATAGGGCTCTCAACGGAGGAGCTAGAGAAA  200

seq1  GTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACGTTA  250
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  GTAGCCAAGGAGCTAAAGGGATCTGCAACTCTATAGGTGGAACAACATTA  250

seq1  TGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATATATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATATATCAA  300

seq1  AAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCA  350

seq1  AACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGGGGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGGGGGAGT  400

seq1  GGGTGGGCAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTTTGGTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGCAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTTTGGTATAG  450

seq1  CATTGGAAATGTAAATGAGTTAAATACCTAATAAAAAATGGAAAAAAAA  499
      ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAA  499

seq1: chrX_19659291_19659563
seq2: B6Ng01-136N15.g_93_292

seq1  TTTGTTTATTTGTTTGTTTTTT----------------TTTGGTT---TT  31
      ||||||| ||||||||||||||                |||||||   ||
seq2  TTTGTTTGTTTGTTTGTTTTTTGTTTGGTTTGGTTTGGTTTGGTTTGGTT  50

seq1  TG---TGGTTT--TTTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGTATA  76
      ||   ||||||  |||| ||| ||||||||||||||||||||||||||||
seq2  TGGTTTGGTTTGGTTTGGTTTGGTTTTTCGAGACAGGGTTTCTCTGTATA  100

seq1  GCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTC  126
      |||||||||||||||||||||||| ||||||||||| || ||| ||    
seq2  GCCCTGGCTGTCCTGGAACTCACTGTGTAGACCAGGTTGACCTTGA----  146

seq1  AGAAATCCGTCTGTCTCTGCCTCCTGAGTGCTGGGATTAAAGGCCGTGTG  176
                                                        
seq2  --------------------------------------------------  146

seq1  CCACCACCGCCTGGCTAGTTCTGTACTTTTTGTAATTAGTGCATTTTATC  226
                                 || ||| ||| ||    || || 
seq2  ---------------------------TTGTGTTATTTGTTTCCTTGAT-  168

seq1  CAGGGCATCAAGTATAGAGGGTTTTTGTTTGTTTGTTTGTTTTGTTT  273
                 || ||    |||||| ||||||||||||||||||||
seq2  -----------GTCTA----GTTTTTTTTTGTTTGTTTGTTTTGTTT  200