BAC Information

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BAC

Clone NameB6Ng01-138F11
Chromosome10 (Build37)
Map Location 56,143,226 - 56,337,974
singlet/doubletdoublet
Overlap geneEG668347
Upstream geneLOC100041927, D630037F22Rik, 1700060H10Rik, EG629732, Gja1
Downstream geneLOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363, Hsf2, Serinc1, LOC211619
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138F11.bB6Ng01-138F11.g
ACCDH937630DH937631
length1,1191,115
definitionDH937630|Mus musculus domesticus DNA, BAC clone: B6Ng01-138F11, 5' end.DH937631|Mus musculus domesticus DNA, BAC clone: B6Ng01-138F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,336,843 - 56,337,974)(56,143,226 - 56,144,358)
sequence
gaattcattactgtaaattcagaaacaacattttccttatttgcttatgc
tatttattggcatgagaacttgtcaagggggtgcattttatgaacttttt
gtagtgtcactattacttttaaagactaaggcatggtattaaaaatccta
aaaaaggtaaggattttttgtgtgaatgctgatccctttagagttgcagc
ttctcgtttcgctaatatgcattagagtacacatcccatagagaagtttc
ttaagtaaaagtttaaagatgtttttgagcatcaagttctccaggcaagc
tttcttgacaccctagactactgagtgaattcttgccctttctttccaac
tattacatggtatcagattatactgatcttactaatgctatggtcacctc
gaaggtgtgttcaaggaacaattcttcctgtacagaaaatcctaaatcct
ttttgaatggccaagagagctataatgataaacactgagtttaatatttc
cactattatttcctatgctcgtataaaaggcaagcttcagagtgatggtg
atcatgtagtggcattagagtggcagtagaatacaatctgaactgtatct
gccagggtcacattatcttcttggtaggtgggaggaagtcatctgtaagg
acttcccagagaacataggtcattgctcttagaactatgtgccccctgaa
ccatgcacacatgtatgcatgaatgtttatacatatacatgggcacagaa
ttatcctaacagttgcctgtttaaaatgctgaacactaaagggatcagca
ttcagcatttaatgaaatgctatttaaggctgcattctgtcctctctaca
tttatttcacacattgtaaccacacccctccatgtctgtgatccaatcag
gcagtgattaatggctttggaatccgttggccttttttattatatgatta
tattagatattatatatatatggctatatatatatctcaaatagtatggg
tctaactttagttttaatagaaactgctgagtttgtatgtacatatttgt
acaatagtcccaaaaagcttcacccagttcttatttaactgttaaagaac
aaaccaatggaaatgtttc
gaattcacttataactggagattgtttatagaagggatagtatacaatga
gctctagcagctgtgatttaatttaaaaataagagcccaatttgacaagt
atttctatttaaaaaatgacagtaagctgggcagtggtggcgcacgcttt
aatcccagcacttgggaggcagaggcaggtggatttctgagttcgaggcc
agcctggtctacagtaagttccaggactgccagggctatacagagaaacc
ctgtctcaaaaaccaaaaacaacaacaacaaaaagagatagtaaataaat
aaaatcagcctacaagcaggatgacctaacaaatagaaatatgagcattc
cagctgactttgagttatttgcccgtgtttttcctagtgagggttacttt
aaactacatacctctttgcaaactctcacggaaacaataagtattttgaa
ctgttgtcccccggccccctaccaaaaggcttgctgatgaccttcagcta
gggcatcagagatgatcaagagttagtacagaaacggttgcctgtatttt
tcaataatagtaaattctttgaatgtagtatttttaaggtagcaagtttc
acactgataacatcagaataagacattttgttgcctaacgtacatcacca
aaactgggcagacacagaccaaatggttagcttctaataaaggttcatat
ttttcatataataaatacttctataaagattttctgggaagaaataccca
tggattactgcaggcaagccccataataatagaggcaaaatgctgtctcc
tagaagctctgcccctgactgtaaatcagataggttgagagcgagctgca
acatatccaccaagttatatttaacgttacttgagaaagagtcgtgggtt
cgcttaatgttggatccgtttgatcttattgaaaggaggcaccagttaca
ggaaacagacccttcattgaaaggtcttgtaatatgttagatttcccaga
aacaatgatcttgagaggagagtggagacagttgagggaagttagcccct
acgcttccagcagtgaagctttcttgtcttgcatcgatgctttgtcctgc
ttttatcctcccaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_56336843_56337974
seq2: B6Ng01-138F11.b_44_1162 (reverse)

seq1  GAAACATCT-CATT-GTTTGTTCTTTTTAACCAGTTTAAATAAGAACT-G  47
      ||||||| | |||| |||||||||||   | ||| ||||||||||||| |
seq2  GAAACATTTCCATTGGTTTGTTCTTT---AACAG-TTAAATAAGAACTGG  46

seq1  GTGAAGCTTTTTTGGTGAACTATTGTACAAATATGTACATACATACTTCA  97
      |||||||||||| ||   ||||||||||||||||||||||||| || |||
seq2  GTGAAGCTTTTTGGG---ACTATTGTACAAATATGTACATACAAAC-TCA  92

seq1  GCAGTTTCTATTAAAACTAAAAGTTAGAACCATAACTAATTTGAGATATA  147
      |||||||||||||||||| ||||||||| |||| ||| ||||||||||||
seq2  GCAGTTTCTATTAAAACT-AAAGTTAGACCCAT-ACT-ATTTGAGATATA  139

seq1  TTATATAGCCATATTATAATATAATATCTAATATAATCATATAATAAAAA  197
       |||||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  -TATATAGCCATA-TAT-ATATAATATCTAATATAATCATATAATAAAAA  186

seq1  AGGCCAACGGATTCCAAAGCCATTAATCACTGCCCTGATTTGGATCACAG  247
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  AGGCCAACGGATTCCAAAGCCATTAATCACTG-CCTGA-TTGGATCACAG  234

seq1  ACATGGAGGGGTGTGGTTACAATGTGTGAAATAAATGTAGAGAGGACAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAGGGGTGTGGTTACAATGTGTGAAATAAATGTAGAGAGGACAGA  284

seq1  ATGCAGCCTTAAATAGCATTTCATTAAATGCTGAATGCTGATCCCTTTAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCCTTAAATAGCATTTCATTAAATGCTGAATGCTGATCCCTTTAG  334

seq1  TGTTCAGCATTTTAAACAGGCAACTGTTAGGATAATTCTGTGCCCATGTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCATTTTAAACAGGCAACTGTTAGGATAATTCTGTGCCCATGTA  384

seq1  TATGTATAAACATTCATGCATACATGTGTGCATGGTTCAGGGGGCACATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATAAACATTCATGCATACATGTGTGCATGGTTCAGGGGGCACATA  434

seq1  GTTCTAAGAGCAATGACCTATGTTCTCTGGGAAGTCCTTACAGATGACTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAGAGCAATGACCTATGTTCTCTGGGAAGTCCTTACAGATGACTT  484

seq1  CCTCCCACCTACCAAGAAGATAATGTGACCCTGGCAGATACAGTTCAGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACCTACCAAGAAGATAATGTGACCCTGGCAGATACAGTTCAGAT  534

seq1  TGTATTCTACTGCCACTCTAATGCCACTACATGATCACCATCACTCTGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTACTGCCACTCTAATGCCACTACATGATCACCATCACTCTGAA  584

seq1  GCTTGCCTTTTATACGAGCATAGGAAATAATAGTGGAAATATTAAACTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTTTTATACGAGCATAGGAAATAATAGTGGAAATATTAAACTCA  634

seq1  GTGTTTATCATTATAGCTCTCTTGGCCATTCAAAAAGGATTTAGGATTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTATCATTATAGCTCTCTTGGCCATTCAAAAAGGATTTAGGATTTT  684

seq1  CTGTACAGGAAGAATTGTTCCTTGAACACACCTTCGAGGTGACCATAGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAGGAAGAATTGTTCCTTGAACACACCTTCGAGGTGACCATAGCA  734

seq1  TTAGTAAGATCAGTATAATCTGATACCATGTAATAGTTGGAAAGAAAGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAGATCAGTATAATCTGATACCATGTAATAGTTGGAAAGAAAGGG  784

seq1  CAAGAATTCACTCAGTAGTCTAGGGTGTCAAGAAAGCTTGCCTGGAGAAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTCACTCAGTAGTCTAGGGTGTCAAGAAAGCTTGCCTGGAGAAC  834

seq1  TTGATGCTCAAAAACATCTTTAAACTTTTACTTAAGAAACTTCTCTATGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCTCAAAAACATCTTTAAACTTTTACTTAAGAAACTTCTCTATGG  884

seq1  GATGTGTACTCTAATGCATATTAGCGAAACGAGAAGCTGCAACTCTAAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTACTCTAATGCATATTAGCGAAACGAGAAGCTGCAACTCTAAAG  934

seq1  GGATCAGCATTCACACAAAAAATCCTTACCTTTTTTAGGATTTTTAATAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGCATTCACACAAAAAATCCTTACCTTTTTTAGGATTTTTAATAC  984

seq1  CATGCCTTAGTCTTTAAAAGTAATAGTGACACTACAAAAAGTTCATAAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTAGTCTTTAAAAGTAATAGTGACACTACAAAAAGTTCATAAAA  1034

seq1  TGCACCCCCTTGACAAGTTCTCATGCCAATAAATAGCATAAGCAAATAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCCCTTGACAAGTTCTCATGCCAATAAATAGCATAAGCAAATAAG  1084

seq1  GAAAATGTTGTTTCTGAATTTACAGTAATGAATTC  1132
      |||||||||||||||||||||||||||||||||||
seq2  GAAAATGTTGTTTCTGAATTTACAGTAATGAATTC  1119

seq1: chr10_56143226_56144358
seq2: B6Ng01-138F11.g_68_1182

seq1  GAATTCACTTATAACTGGAGATTGTTTATAGAAGGGATAGTATACAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTATAACTGGAGATTGTTTATAGAAGGGATAGTATACAATGA  50

seq1  GCTCTAGCAGCTGTGATTTAATTTAAAAATAAGAGCCCAATTTGACAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGCAGCTGTGATTTAATTTAAAAATAAGAGCCCAATTTGACAAGT  100

seq1  ATTTCTATTTAAAAAATGACAGTAAGCTGGGCAGTGGTGGCGCACGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATTTAAAAAATGACAGTAAGCTGGGCAGTGGTGGCGCACGCTTT  150

seq1  AATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCC  200

seq1  AGCCTGGTCTACAGTAAGTTCCAGGACTGCCAGGGCTATACAGAGAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTCTACAGTAAGTTCCAGGACTGCCAGGGCTATACAGAGAAACC  250

seq1  CTGTCTCAAAAACCAAAAACAACAACAACAAAAAGAGATAGTAAATAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCAAAAACCAAAAACAACAACAACAAAAAGAGATAGTAAATAAAT  300

seq1  AAAATCAGCCTACAAGCAGGATGACCTAACAAATAGAAATATGAGCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGCCTACAAGCAGGATGACCTAACAAATAGAAATATGAGCATTC  350

seq1  CAGCTGACTTTGAGTTATTTGCCCGTGTTTTTCCTAGTGAGGGTTACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGACTTTGAGTTATTTGCCCGTGTTTTTCCTAGTGAGGGTTACTTT  400

seq1  AAACTACATACCTCTTTGCAAACTCTCACGGAAACAATAAGTATTTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACATACCTCTTTGCAAACTCTCACGGAAACAATAAGTATTTTGAA  450

seq1  CTGTTGTCCCCCGGCCCCCTACCAAAAGGCTTGCTGATGACCTTCAGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTCCCCCGGCCCCCTACCAAAAGGCTTGCTGATGACCTTCAGCTA  500

seq1  GGGCATCAGAGATGATCAAGAGTTAGTACAGAAACGGTTGCCTGTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCAGAGATGATCAAGAGTTAGTACAGAAACGGTTGCCTGTATTTT  550

seq1  TCAATAATAGTAAATTCTTTGAATGTAGTATTTTTAAGGTAGCAAGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAATAGTAAATTCTTTGAATGTAGTATTTTTAAGGTAGCAAGTTTC  600

seq1  ACACTGATAACATCAGAATAAGACATTTTGTTGCCTAACGTACATCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGATAACATCAGAATAAGACATTTTGTTGCCTAACGTACATCACCA  650

seq1  AAACTGGGCAGACACAGACCAAATGGTTAGCTTCTAATAAAGGTTCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGCAGACACAGACCAAATGGTTAGCTTCTAATAAAGGTTCATAT  700

seq1  TTTTCATATAATAAATACTTCTATAAAGATTTTCTGGGAAGAAATACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATATAATAAATACTTCTATAAAGATTTTCTGGGAAGAAATACCCA  750

seq1  TGGATTACTGCAGGCAAGCCCCATAATAATAGAGGCAAAATGCTGTCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTACTGCAGGCAAGCCCCATAATAATAGAGGCAAAATGCTGTCTCC  800

seq1  TAGAAGCTCTGCCCCTGACTGTAAAATCAGATAGGTTGAGAGCGAGCTGC  850
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAGAAGCTCTGCCCCTGACTGT-AAATCAGATAGGTTGAGAGCGAGCTGC  849

seq1  AACATATCCACCAAAGTTATAATTAACGTTAACTTGAGAAAGAGTCGTGG  900
      |||||||||||| |||||||| |||||||| |||||||||||||||||||
seq2  AACATATCCACC-AAGTTATATTTAACGTT-ACTTGAGAAAGAGTCGTGG  897

seq1  CTCCGCTTAATGTTGGATTCCGTTTGATCTTAATTGAAAGGAGGCACCAG  950
       | |||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  GTTCGCTTAATGTTGGA-TCCGTTTGATCTT-ATTGAAAGGAGGCACCAG  945

seq1  TTACAGGAAACAGACCCTTCATTGAAAAGGCCTTGTAATATGTTTAGAAT  1000
      |||||||||||||||||||||||| ||||| ||||||||||| |||| ||
seq2  TTACAGGAAACAGACCCTTCATTG-AAAGGTCTTGTAATATG-TTAG-AT  992

seq1  TTCCCAAGAAACAAAAGGGATCTTGAGA-GAGAGTGGAGACAGTTGGAAG  1049
      ||||| ||||||||    |||||||||| |||||||||||||||||  ||
seq2  TTCCC-AGAAACAA---TGATCTTGAGAGGAGAGTGGAGACAGTTG--AG  1036

seq1  GGAAGTTAAGCCCCTAACGCTTCCCAGCAGTGAAGCTCTC-TGTCTTGCT  1098
      ||||||| ||||||| |||||| |||||||||||||| || |||||||| 
seq2  GGAAGTT-AGCCCCT-ACGCTT-CCAGCAGTGAAGCTTTCTTGTCTTGCA  1083

seq1  TCGGATGCCTTTGCTCTGGCCTTTATCCTCCCAAC  1133
      || |||| ||||| ||  || ||||||||||||||
seq2  TC-GATG-CTTTG-TCCTGCTTTTATCCTCCCAAC  1115