BAC Information

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BAC

Clone NameB6Ng01-138F19
Chromosome10 (Build37)
Map Location 87,982,046 - 88,114,156
singlet/doubletdoublet
Overlap gene8030451F13Rik, LOC667046, LOC627414
Upstream genePah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1
Downstream geneLOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138F19.bB6Ng01-138F19.g
ACCDH937642DH937643
length1,1311,021
definitionDH937642|Mus musculus domesticus DNA, BAC clone: B6Ng01-138F19, 5' end.DH937643|Mus musculus domesticus DNA, BAC clone: B6Ng01-138F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,113,054 - 88,114,156)(87,982,046 - 87,983,074)
sequence
gaattcatgcagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cggtcccgagttttcttgtattttttcgtcccggattttttttcgtcccg
gattttctcgtcccggaattcggcaccaattcttaatagcgttctcacga
ccggccaggaaagaacacaacaaaccagaatcttctgcggcaaaacttta
ttgcttacatcttcaggagccaggagcgcaaacccccagccccaaaagcg
aaagccaccccaattacgaaaccgaaaccccttccctatttaggagagtt
atatttcgcctaggacgcatcactccctgattggctgcagcccatggccg
agctgacgttcacgggaaaggcagagtacaagtagtcgtaaaataccctt
ggcacatgcgcagattatttgtttaccacttagaacacaggatgtcagcg
ccatcttgtgacggcgaatgtgggggcggctcccaacaatagtcaaggct
gagaatgggaagcttatcatcaacaggaagcccatcaccatcttccagga
ttgagatcccactaacatcaaatgtggtgatgttggtgctgagtatgtca
tggagtctactggtgccttcaccaccatggagaaggctggggcctacttt
cagggtgggggcaaaagagtcatctccaccccttctgccaatgcccccat
gtttgtgatgggtgtgaaccatgagaaatatgacaacttgttcaagattg
tcagcaatgcatcctgtaccactaattgttcagccttcttggccaaggtc
atccatgacaactttggcatcgtggaaaggctcatgaccatggtccatgc
catcactgccacttagaagactgtggattacctctctggaaagctgtggc
gtgatggccgtggggctgcccagaacatcatccctgcatctactgtgctg
caacactgtgagcaagtcatctcagaggtgaacaggagtcactgcatgtc
ttccctgtttctaccttccaatgatttgagaatgtgcctggagaacctat
cagtatgaagacattcagaggtggtgagcag
gaattcctgttatatagatatatatttaaaaaaaaaacaacaacctcaga
gtgtcattcaagagagaacccatgaagccagaactctgcactgcccttta
atgaatgcttcacttgcttaaaaaaaattcatgaccagacaaagcagcat
gctgtttgaacattcttaaaacttctttgatgcaaatttgagaaactcat
tctccttaataaaaaaaaccaaaaaaccaaaacaaaaaaaaaaaaacaac
caaccaaccacaccacatattggtagaaatgatgccacgtatatacaggt
ccattccttgatgcaaagaattcagaatgcatggggatcactcattcgtt
ttcatggacgtcaaatgctctgagccatgctctgccgcattcagtcactc
gctgcatgtcaaggagaaatggttgagaaggatcagtagtggatgttagt
ttcaagatccagaaatacaaattaaagctaggaggttagcaggtgctatt
tccactgggttagggaatgaaaatcatgccatactccacaggctcggtat
ggcttatgacattcataagcttcatatgctaaggccatatgaaagcttac
cttgggtgacaatatacattcaaacatccttactgtgctacgactaaggg
agagaaagaaagaaaaagagagacgttgtaagcattaataaagtgctgat
atcaaagttgagtgtatgttgaaggtgaaattacggtcacaacggtgagg
tgatttcattaatccttagtcgggtgaagggcaaaggaaaaaaaaataga
gtgaagggtgtcacttcaagaggatcattaatgcataaaaaattaataat
acgcatcaccactttgctagaataggtggcaaagctaatctgactagtgc
atatttatagtaagagattccaaaccgttagcttaaaaaaaataccctac
aacatatatatatcgtgtttttcaacaaaagaaaacatagcatattacat
gtagtgttcatatatatatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88113054_88114156
seq2: B6Ng01-138F19.b_86_1177 (reverse)

seq1  CTGCTTCACCACCTTCTTGATGTCTTCATACTTGATAGGTTTCTCCAGGC  50
      |||| |||||||| |||  |||||||||||| ||||||| ||||||||||
seq2  CTGC-TCACCACC-TCTGAATGTCTTCATAC-TGATAGG-TTCTCCAGGC  46

seq1  AACATCTCAAATCCATTGG-AGGTAGAAACAGGGAAGACCATGCCAGTGA  99
      |   |||||||| |||||| |||||||||||||||||| |||| ||||||
seq2  ACATTCTCAAAT-CATTGGAAGGTAGAAACAGGGAAGA-CATG-CAGTGA  93

seq1  ACTTCCTGTTCACCTCTGGGATGACTTTGCTCACAGTGTTGGCAGCACCA  149
         ||||||||||||||| |||||| |||||||||||||| |||||| ||
seq2  --CTCCTGTTCACCTCTGAGATGAC-TTGCTCACAGTGTT-GCAGCA-CA  138

seq1  GTAGATGCAGGGATGATGTTCTGGGCAGCCCCACGGCCATCACGCCACAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGCAGGGATGATGTTCTGGGCAGCCCCACGGCCATCACGCCACAG  188

seq1  CTTTCCAGAGGGGTAATCCACAGTCTTCTAAGTGGCAGTGATGGCATGGA  249
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGAGAGGTAATCCACAGTCTTCTAAGTGGCAGTGATGGCATGGA  238

seq1  CCATGGTCATGAGCCCTTCCACGATGCCAAAGTTGTCATGGATGACCTTG  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCATGGTCATGAGCCTTTCCACGATGCCAAAGTTGTCATGGATGACCTTG  288

seq1  GCCAAGAAGGCTGAACAATTAGTGGTACAGGATGCATTGCTGACAATCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAAGGCTGAACAATTAGTGGTACAGGATGCATTGCTGACAATCTT  338

seq1  GAACAAGTTGTCATATTTCTCATGGTTCACACCCATCACAAACATGGGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGTTGTCATATTTCTCATGGTTCACACCCATCACAAACATGGGGG  388

seq1  CATTGGCAGAAGGGGTGGAGATGACTCTTTTGCCCCCACCCTGAAAGTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCAGAAGGGGTGGAGATGACTCTTTTGCCCCCACCCTGAAAGTAG  438

seq1  GCCCCAGCCTTCTCCATGGTGGTGAAGGCACCAGTAGACTCCATGACATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCCTTCTCCATGGTGGTGAAGGCACCAGTAGACTCCATGACATA  488

seq1  CTCAGCACCAACATCACCACATTTGATGTTAGTGGGATCTCAATCCTGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCACCAACATCACCACATTTGATGTTAGTGGGATCTCAATCCTGGA  538

seq1  AGATGGTGATGGGCTTCCTGTTGATGATAAGCTTCCCATTCTCAGCCTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTGATGGGCTTCCTGTTGATGATAAGCTTCCCATTCTCAGCCTTG  588

seq1  ACTATTGTTGGGAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGTTGGGAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGAC  638

seq1  ATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTA  688

seq1  TTTTACGACTACTTGTACTCTGCCTTTCCCGTGAACGTCAGCTCGGCCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACGACTACTTGTACTCTGCCTTTCCCGTGAACGTCAGCTCGGCCAT  738

seq1  GGGCTGCAGCCAATCAGGGAGTGATGCGTCCTAGGCGAAATATAACTCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCAGCCAATCAGGGAGTGATGCGTCCTAGGCGAAATATAACTCTC  788

seq1  CTAAATAGGGAAGGGGTTTCGGTTTCGTAATTGGGGTGGCTTTCGCTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAGGGAAGGGGTTTCGGTTTCGTAATTGGGGTGGCTTTCGCTTTT  838

seq1  GGGGCTGGGGGTTTGCGCTCCTGGCTCCTGAAGATGTAAGCAATAAAGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGGGGTTTGCGCTCCTGGCTCCTGAAGATGTAAGCAATAAAGTT  888

seq1  TTGCCGCAGAAGATTCTGGTTTGTTGTGTTCTTTCCTGGCCGGTCGTGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGCAGAAGATTCTGGTTTGTTGTGTTCTTTCCTGGCCGGTCGTGAG  938

seq1  AACGCTATTAAGAATTGGTGCCGAATTCCGGGACGAGAAAATCCGGGACG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTATTAAGAATTGGTGCCGAATTCCGGGACGAGAAAATCCGGGACG  988

seq1  AAAAAAAATCCGGGACGAAAAAATACAAGAAAACTCGGGACCGGCGCAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCCGGGACGAAAAAATACAAGAAAACTCGGGACCGGCGCAAG  1038

seq1  GAAGATCCCTCATTCCAGAACCAGAACTGCGGGTCGCGGTAATAAAGGTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCCCTCATTCCAGAACCAGAACTGCGGGTCGCGGTAATAAAGGTT  1088

seq1  CCCG  1103
      ||||
seq2  CCCG  1092

seq1: chr10_87982046_87983074
seq2: B6Ng01-138F19.g_63_1083

seq1  GAATTCCTGTTATATAGATATATATTTAAAAAAAAAACAACAACCTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTATATAGATATATATTTAAAAAAAAAACAACAACCTCAGA  50

seq1  GTGTCATTCAAGAGAGAACCCATGAAGCCAGAACTCTGCACTGCCCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATTCAAGAGAGAACCCATGAAGCCAGAACTCTGCACTGCCCTTTA  100

seq1  ATGAATGCTTCACTTGCTTAAAAAAAATTCATGACCAGACAAAGCAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGCTTCACTTGCTTAAAAAAAATTCATGACCAGACAAAGCAGCAT  150

seq1  GCTGTTTGAACATTCTTAAAACTTCTTTGATGCAAATTTGAGAAACTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTGAACATTCTTAAAACTTCTTTGATGCAAATTTGAGAAACTCAT  200

seq1  TCTCCTTAATAAAAAAAACCAAAAAACCAAAACAAAAAAAAAAAAACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTAATAAAAAAAACCAAAAAACCAAAACAAAAAAAAAAAAACAAC  250

seq1  CAACCAACCACACCACATATTGGTAGAAATGATGCCACGTATATACAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAACCACACCACATATTGGTAGAAATGATGCCACGTATATACAGGT  300

seq1  CCATTCCTTGATGCAAAGAATTCAGAATGCATGGGGATCACTCATTCGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCTTGATGCAAAGAATTCAGAATGCATGGGGATCACTCATTCGTT  350

seq1  TTCATGGACGTCAAATGCTCTGAGCCATGCTCTGCCGCATTCAGTCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGACGTCAAATGCTCTGAGCCATGCTCTGCCGCATTCAGTCACTC  400

seq1  GCTGCATGTCAAGGAGAAATGGTTGAGAAGGATCAGTAGTGGATGTTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATGTCAAGGAGAAATGGTTGAGAAGGATCAGTAGTGGATGTTAGT  450

seq1  TTCAAGATCCAGAAATACAAATTAAAGCTAGGAGGTTAGCAGGTGCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGATCCAGAAATACAAATTAAAGCTAGGAGGTTAGCAGGTGCTATT  500

seq1  TCCACTGGGTTAGGGAATGAAAATCATGCCATACTCCACAGGCTCGGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGGGTTAGGGAATGAAAATCATGCCATACTCCACAGGCTCGGTAT  550

seq1  GGCTTATGACATTCATAAGCTTCATATGCTAAGGCCATATGAAAGCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATGACATTCATAAGCTTCATATGCTAAGGCCATATGAAAGCTTAC  600

seq1  CTTGGGTGACAATATACATTCAAACATCCTTACTGTGCTACGACTAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTGACAATATACATTCAAACATCCTTACTGTGCTACGACTAAGGG  650

seq1  AGAGAAAGAAAGAAAAAGAGAGACGTTGTAAGCATTAATAAAGTGCTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAAAGAAAAAGAGAGACGTTGTAAGCATTAATAAAGTGCTGAT  700

seq1  ATCAAAGTTGAGTGTATGTTGAAGGTGAAATTACGGTCACAACGGTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGTTGAGTGTATGTTGAAGGTGAAATTACGGTCACAACGGTGAGG  750

seq1  TGATTTCATTAATCCTTAGTCGGGTGAAGGGCAAAGGAAAAAAAAATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCATTAATCCTTAGTCGGGTGAAGGGCAAAGGAAAAAAAAATAGA  800

seq1  GTGAAGGGTGTCACTTCAAGAGGATCATTAATGCATAAAAAATTAATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGGTGTCACTTCAAGAGGATCATTAATGCATAAAAAATTAATAAT  850

seq1  ACGCATCACCACTTTGCTAGAATAGGTGGCAAAGCTAATCTGACTAGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATCACCACTTTGCTAGAATAGGTGGCAAAGCTAATCTGACTAGTGC  900

seq1  ATATTTATAGTAAGAGATTCCAAACCGTTAGCTTAAAAAAAAATACCCTA  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATATTTATAGTAAGAGATTCCAAACCGTTAGCTT-AAAAAAAATACCCTA  949

seq1  CAACATATATATATCGTGTTTTTCAACAAAAGAAAAACATAGGCAATATT  1000
      |||||||||||||||||||||||||||||||| |||||||||   |||||
seq2  CAACATATATATATCGTGTTTTTCAACAAAAG-AAAACATAG--CATATT  996

seq1  TAACAATGTTAGTGTTCATATATATATGT  1029
        || ||| ||||||||||||||||||||
seq2  --AC-ATG-TAGTGTTCATATATATATGT  1021