BAC Information

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BAC

Clone NameB6Ng01-138L22
Chromosome5 (Build37)10 (Build37)
Map Location 109,683,901 - 109,684,6195,441,482 - 5,441,621
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128
Downstream geneEG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138L22.bB6Ng01-138L22.g
ACCDH937916DH937917
length1,149984
definitionDH937916|Mus musculus domesticus DNA, BAC clone: B6Ng01-138L22, 5' end.DH937917|Mus musculus domesticus DNA, BAC clone: B6Ng01-138L22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,683,901 - 109,684,619)(5,441,482 - 5,441,621)
sequence
gaattctcactgagaaagaaattcatattacagactacattccatgccaa
gagcaaattaatatactatactgataaatgaagatccttcagacaagata
atttaacaaggcctagagaattttgaggtcagtgacactacattattctt
gaggcatgtcaagagttaacaaccctggtgctattaacactaagtgtaaa
actcttgcctggcagaaggtgctaatctctaatgtaaacatttatctggt
ccctacaaattccctttgaagtcactccccttgcatctgtgctaatctct
agtgttaaacatttatctggttccttttgaagtcactccttttgcacctg
gaaaaattcaatgtgccttattctgttatgatttgcaatttactctgtat
tataaaaagtctgaggctcaactggaaaattacattcagatccaacacca
ctcttgcgtgtttgtctgtctgtcactccatcctactctttgcccatctg
tttaagagatcccgttctacgcagattcagggacccagagggtctgcggc
aactggactgagcactggttattcaaatggaggagttagagaaagaacca
aagcagctgaaggggcttgtattcccataggaagaaaaacagtatcaaac
aaccagatcccccagagtttccaggactgaaccaccaatcaaagtgcaca
catggagtgatccatggctccagccacctatgtaacaaaggatgtcctgg
ttggacatcaatgggaggagaggcctatgttcctgggaaagctcaatgtc
ccagtgtagtggaattccaaggcaggatatcagagagggtggggcttttg
gggagcaccctcagagaagcaggcaaggggaatgggatagggggcttcca
gagggaaactaggaaagggtatagcatttgaatgtaagtaaatagtcaat
aaaaatggcttacagagctaatagagaattatatcacaggaaatttcatg
ttgataagtgcatggctgattttgtgtgtcactgacacagctagaagtat
cacggagaaaggacttcagttgggaagcctccatgagctccagctgtagg
atttccatattgtatcaaggagtccatgtggtggaccatctctaggctg
gaattcagccctgagtttatttcctgccatcttctcctgttggatgttct
tgtttctttttgttctagagctttcagatgtgctattaagtttctattgt
aggatcacttcaactttttaaaatgtaggtacttagtgctatgaaagttc
ttcctagcactgtattcattgtgccctacaagttttggtgtgctgtacct
tcatacgcagtaaattctagaatgtctttaattcctttctttattttttt
ccttacaaagttatcgttggatagagacataaatagtttccatgagtatg
tggactttctattgttcttgcttctattaaagaccagcattggttcatga
taatgtgatagaatgcatgagattatatcaatcttcttgtatttgttgag
tcttgttttgtgtctgattatatggccaattttggagaaggaaccataag
gtgctgagaagaagttatattctttggttttaggataaaatgttctgtag
atatccatttgattcataatttttgttagatccactgtgtctctgtttaa
tttctgtttcaacaacctgtttattgatgagggatagtgttaaattctcc
cactattattttgtgaggttcaatgtgtggtttctacttttgtaaagttt
cttttacaaatgtgggtacccttgcgtttggggtgtagatgtttagaatt
gagagttcatcttgttgaattttttctttgatgagtatgaagtgtccttc
actatatcttttgattacttttggttgaaagcctattctatttgatatca
gaatgtccacttccagcttatttctctggaccatttggttggaaaacttt
tttcagtcttttactctgaagtagtgtctgtctttgtcactggagtgtgt
gtcttgtatgcagcaaaatgctggttcatgcttacttggtcagtctgtga
ggctatgtctttttatggggaattgattcaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_109683901_109684619
seq2: B6Ng01-138L22.b_508_1195

seq1  TTGTCTGTCTGTCACTCCATCCTACTCTTTGCCCATCTGTTTAAGAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTCTGTCACTCCATCCTACTCTTTGCCCATCTGTTTAAGAGATC  50

seq1  CCGTTCTACGCAGATTCAGGGACCCAGAGGGTCTGCGGCAACTGGACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTCTACGCAGATTCAGGGACCCAGAGGGTCTGCGGCAACTGGACTGA  100

seq1  GCACTGGTTATTCAAATGGAGGAGTTAGAGAAAGAACCAAAGCAGCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGTTATTCAAATGGAGGAGTTAGAGAAAGAACCAAAGCAGCTGAA  150

seq1  GGGGCTTGTATTCCCATAGGAAGAAAAACAGTATCAAACAACCAGATCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTGTATTCCCATAGGAAGAAAAACAGTATCAAACAACCAGATCCC  200

seq1  CCAGAGTTTCCAGGACTGAACCACCAATCAAAGTGCACACATGGAGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTTTCCAGGACTGAACCACCAATCAAAGTGCACACATGGAGTGAT  250

seq1  CCATGGCTCCAGCCACCTATGTAACAAAGGATGTCCTGGTTGGACATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTCCAGCCACCTATGTAACAAAGGATGTCCTGGTTGGACATCAA  300

seq1  TGGGAGGAGAGGCCTATGTTCCTGGGAAAGCTCAATGTCCCAGTGTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGAGAGGCCTATGTTCCTGGGAAAGCTCAATGTCCCAGTGTAGTG  350

seq1  GAATTCCAAGGCAGGATATCAGAGAGGGTGGGGCTTTTGGGGAGCACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGCAGGATATCAGAGAGGGTGGGGCTTTTGGGGAGCACCCT  400

seq1  CAGAGAAGCAGGGCAAGGGGGAATGGGATAGGGGGCTTCCAGAGGGGAAA  450
      |||||||||| ||||| |||||||||||||||||||||||||| ||||||
seq2  CAGAGAAGCA-GGCAA-GGGGAATGGGATAGGGGGCTTCCAGA-GGGAAA  447

seq1  CTAGGAAAGGGTATAGCATTTGAAATGTAAGTAAATAAGTCAATAAAAAT  500
      |||||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  CTAGGAAAGGGTATAGCATTTG-AATGTAAGTAAAT-AGTCAATAAAAAT  495

seq1  GGCTTACAGAGCTTAATAGAGAAATTATATCACAGGAAATTTCAATGTTT  550
      |||||||||||| |||||||| ||||||||||||||||||||| ||| ||
seq2  GGCTTACAGAGC-TAATAGAG-AATTATATCACAGGAAATTTC-ATG-TT  541

seq1  GATAAGTGCATTGGCTGATTTTGTGTGTCAACTTGACACAGGCTAGAGTT  600
      |||||||||| |||||||||||||||||||   ||||||| ||||||  |
seq2  GATAAGTGCA-TGGCTGATTTTGTGTGTCA--CTGACACA-GCTAGAAGT  587

seq1  ATCACGGAGAAAGGAGCTTCAGTTGGGGAAAAGCCTCCATGAGCTCCAGC  650
      ||||||||||||||| |||||||||||   ||||||||||||||||||||
seq2  ATCACGGAGAAAGGA-CTTCAGTTGGG---AAGCCTCCATGAGCTCCAGC  633

seq1  TGTAAGGTATTTTCTCAATTAGTG-ATCAAGGGGGAAAGGCCCCATGTGG  699
      ||||  | |||| |     || || ||||||| |        ||||||||
seq2  TGTA--GGATTTCC----ATATTGTATCAAGGAG-------TCCATGTGG  670

seq1  GTGGGACCATCTCTAGGCTG  719
         |||||||||||||||||
seq2  --TGGACCATCTCTAGGCTG  688

seq1: chr10_5441482_5441621
seq2: B6Ng01-138L22.g_497_627 (reverse)

seq1  GAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAAC  50
      |||||||||| ||||||| ||||||||| | |||||| || ||||||| |
seq2  GAAACAGAAATTAAACAGAGACACAGTGGATCTAACAAAAATTATGAATC  50

seq1  AAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGA  100
      |||||         ||||||||||||||||||||||||||||| |||| |
seq2  AAATG---------GATATCTACAGAACATTTTATCCTAAAACCAAAGAA  91

seq1  TATACCTTCTTCTCAGAACCTCATGGTACCTTCTCCAAAA  140
      |||| ||||||||||| |||| ||||| ||||||||||||
seq2  TATAACTTCTTCTCAGCACCTTATGGTTCCTTCTCCAAAA  131