BAC Information

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BAC

Clone NameB6Ng01-140N11
Chromosome10 (Build37)
Map Location 21,316,155 - 21,435,457
singlet/doubletdoublet
Overlap gene1700020N01Rik, EG432436
Upstream genePde7b, LOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906
Downstream geneLOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140N11.bB6Ng01-140N11.g
ACCDH939461DH939462
length1,1401,020
definitionDH939461|Mus musculus domesticus DNA, BAC clone: B6Ng01-140N11, 5' end.DH939462|Mus musculus domesticus DNA, BAC clone: B6Ng01-140N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,434,314 - 21,435,457)(21,316,155 - 21,317,171)
sequence
gaattcagtataacctagagctttgcctccaggcaggaaagtctgactca
ctggggataattgcaaacctgtgcacacaatccatgtaactagactaaat
atgaacggaatcaatattaagacatttcctctcaataatgataactggat
cttagaagcatttcagcaataaatagccatggtttaatttctttaaaaaa
tatatgtggcgaatccacacccctatgagacataataaatgacttaatgt
tcaactcactagagagattaatgtccatctagtttagcaaatagaataca
cacacacacacacacacacacacacacacacacacaaagagagtacgttg
gctgatgcctttggtcattcagatgatggttaaccttgcagactcctaga
gagagttgggtacacataggggttatcccaatacggtctgtaaaaagccc
aaagggaaagaaacttctagatcatactgccaactcccaactagcaagtc
tcatttgagaacaggggggtaattgttctgatattgcagagagccacatg
ggaacaaagttcacagtgaagaatatgggcaataaaaacagttggtgtta
gggtacgaggacaggggtgggggtgtgaatctcgggtttatacttagaat
ttatttaatgctatttgtattttaaaagtcttgcttcatgtgtaaatgct
tacacatgaagaagctttagttatgtgaatgtcaactaatatttattttg
taccagttgtgcattgcttttcagtcatgtctacataagctttgtggtag
gagtatacattgtggattccttggggaccacagacaccaaaaacgaaggt
gaaagttatattttaatcatgagatcaaactattaaatttactcaaaaaa
tcatatagtgaattttagaatttctgcaattgaaaatcatcttaatacct
aaagacatgtcatatttcttggccttcaccctcttctctacctgaaacta
ccatgctaagccaatcttctcaagacagcttcctctccaaatctgcttaa
ccacttcagttccttctccatggacatccacagtttgccctccaggatgc
ctgctataattgggtccatataaccaacaggcatctcttc
gaattcccctccagtttcccctctatcaaagtcattgctatcctcaaaac
cttgggtgtgtgtgggggggggaacagaactataaatgtgttggctgagc
tcaaaggcctgatatttgtaggaacgatcatagcattgaaagcataggct
cagcttttcctcttactgtgagagtaaacgtcagcattctggagactgcc
ttttcaggctctgaacttcgtgtgttgggaagataccttagagctaaaat
gacaccaccaccaccaccaccaccaccaccacctggtagcatcagcctgc
cagagaggtcactaatgagacaatgggggtctttgggtgtttttaacttg
ttggttgtatttgtttcttctatgtctagttccccccaggaaacttacta
gggggagttaattaccccagcataggatatgagctttccttgtgttattg
actgatctcacaatagattacctagaactttaatatttgtattctaacat
tagtttagattgttatcggtcttgtttgttttgcttaagtggagacttgt
gctttaagaaggcaaaatgctgatgtgtttgggatgcatttagcacatca
ccatcgagaagtttttcatttgttagattctcagcaaggctaaatgtgcg
ttctaggcatggctgtgcactgtttgtgagttcagcattgtaaacatcag
agtgaggtagagcccactccctctgtgacatcagagattaaggagcctta
aagaaaagggctatacctggtttactcctaactcactggagccccgcaac
ccaagcttctcagcacgcactggttttcagtgattcagatacaacaaggt
ctctgcgttggttgtgatgtcatgtctcagtggctgactggggctgaaat
tagggtactaaacaacagtttcgacggtggtccttggaataattttaaca
caataaacaaaggctccctccgcaatatttaaattgaaggtttcctacaa
tactttaagtcaattctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_21434314_21435457
seq2: B6Ng01-140N11.b_49_1188 (reverse)

seq1  GAAGAGATGCTTGTGTGGTTAATATGGGACCCAATTATAGCAGGCAT-CA  49
      |||||||||| ||| ||||| |||| ||||||||||||||||||||| | 
seq2  GAAGAGATGCCTGT-TGGTT-ATAT-GGACCCAATTATAGCAGGCATCCT  47

seq1  GGAGGCAAAACTGTGGAGTGTCCAGGGAG-AGGAACTGAAGGTGTT-AGC  97
      |||||  |||||||||| |||||| |||| |||||||||||  ||| |||
seq2  GGAGGGCAAACTGTGGA-TGTCCATGGAGAAGGAACTGAAGTGGTTAAGC  96

seq1  AGAATTTTGGGAGGAAGCTGGTCTTTGGGAAGATTGGCTTAGCAATGGTA  147
      || |||| | ||||||||| ||| ||| ||||||||||||||| ||||||
seq2  AG-ATTTGGAGAGGAAGCT-GTC-TTGAGAAGATTGGCTTAGC-ATGGTA  142

seq1  GTTCAAGGTAGGAGAAGAGGGTGAAGGCCAAGAAATATGACATGTCTTTA  197
      |||  ||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGTA-GAGAAGAGGGTGAAGGCCAAGAAATATGACATGTCTTTA  191

seq1  GGTATTATGATGATTTTCAATTGCAGAAATTCTAAAATTCACTATATGAT  247
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTAAGATGATTTTCAATTGCAGAAATTCTAAAATTCACTATATGAT  241

seq1  TTTTTGAGTAATTTTAATAGTTTGATCTCATGATTAAAATATAACTTTCA  297
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGTAAATTTAATAGTTTGATCTCATGATTAAAATATAACTTTCA  291

seq1  CCTTCGTTTTTGGTGTCTGTGGT-CCCAAGGAATCCACAATGTATACTCC  346
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCTTCGTTTTTGGTGTCTGTGGTCCCCAAGGAATCCACAATGTATACTCC  341

seq1  TACCACAAAGCTTATGTAGACATGACTG-AAAGCAATGCACAACTGGTAC  395
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TACCACAAAGCTTATGTAGACATGACTGAAAAGCAATGCACAACTGGTAC  391

seq1  AAAATAAATATTAGTTGACATTCACATAACTAAAGCTTCTTCATGTGTAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATATTAGTTGACATTCACATAACTAAAGCTTCTTCATGTGTAA  441

seq1  GCATTTACACATGAAGCAAGACTTTTAAAATACAAATAGCATTAAATAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTACACATGAAGCAAGACTTTTAAAATACAAATAGCATTAAATAAA  491

seq1  TTCTAAGTATAAACCCGAGATTCACACCCCCACCCCTGTCCTCGTACCCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGTATAAACCCGAGATTCACACCCCCACCCCTGTCCTCGTACCCT  541

seq1  AACACCAACTGTTTTTATTGCCCATATTCTTCACTGTGAACTTTGTTCCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAACTGTTTTTATTGCCCATATTCTTCACTGTGAACTTTGTTCCC  591

seq1  ATGTGGCTCTCTGCAATATCAGAACAATTACCCCCCTGTTCTCAAATGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCTCTCTGCAATATCAGAACAATTACCCCCCTGTTCTCAAATGAG  641

seq1  ACTTGCTAGTTGGGAGTTGGCAGTATGATCTAGAAGTTTCTTTCCCTTTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTAGTTGGGAGTTGGCAGTATGATCTAGAAGTTTCTTTCCCTTTG  691

seq1  GGCTTTTTACAGACCGTATTGGGATAACCCCTATGTGTACCCAACTCTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTACAGACCGTATTGGGATAACCCCTATGTGTACCCAACTCTCT  741

seq1  CTAGGAGTCTGCAAGGTTAACCATCATCTGAATGACCAAAGGCATCAGCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGTCTGCAAGGTTAACCATCATCTGAATGACCAAAGGCATCAGCC  791

seq1  AACGTACTCTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTACTCTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  841

seq1  GTATTCTATTTGCTAAACTAGATGGACATTAATCTCTCTAGTGAGTTGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTATTTGCTAAACTAGATGGACATTAATCTCTCTAGTGAGTTGAA  891

seq1  CATTAAGTCATTTATTATGTCTCATAGGGGTGTGGATTCGCCACATATAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGTCATTTATTATGTCTCATAGGGGTGTGGATTCGCCACATATAT  941

seq1  TTTTTAAAGAAATTAAACCATGGCTATTTATTGCTGAAATGCTTCTAAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGAAATTAAACCATGGCTATTTATTGCTGAAATGCTTCTAAGA  991

seq1  TCCAGTTATCATTATTGAGAGGAAATGTCTTAATATTGATTCCGTTCATA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTATCATTATTGAGAGGAAATGTCTTAATATTGATTCCGTTCATA  1041

seq1  TTTAGTCTAGTTACATGGATTGTGTGCACAGGTTTGCAATTATCCCCAGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCTAGTTACATGGATTGTGTGCACAGGTTTGCAATTATCCCCAGT  1091

seq1  GAGTCAGACTTTCCTGCCTGGAGGCAAAGCTCTAGGTTATACTGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGACTTTCCTGCCTGGAGGCAAAGCTCTAGGTTATACTGAATTC  1140

seq1: chr10_21316155_21317171
seq2: B6Ng01-140N11.g_65_1084

seq1  GAATTCCACTCCAGTTTCCCCTCTATCAAAGTCATTGCTATCCTCAAAAC  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTCCAGTTTCCCCTCTATCAAAGTCATTGCTATCCTCAAAAC  50

seq1  CTTGGGTGTGTGTGGGGGGGGGAACAGAACTATAAATGTGTTGGCTGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTGTGTGTGGGGGGGGGAACAGAACTATAAATGTGTTGGCTGAGC  100

seq1  TCAAAGGCCTGATATTTGTAGGAACGATCATAGCATTGAAAGCATAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGCCTGATATTTGTAGGAACGATCATAGCATTGAAAGCATAGGCT  150

seq1  CAGCTTTTCCTCTTACTGTGAGAGTAAACGTCAGCATTCTGGAGACTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTTCCTCTTACTGTGAGAGTAAACGTCAGCATTCTGGAGACTGCC  200

seq1  TTTTCAGGCTCTGAACTTCGTGTGTTGGGAAGATACCTTAGAGCTAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGCTCTGAACTTCGTGTGTTGGGAAGATACCTTAGAGCTAAAAT  250

seq1  GACACCACCACCACCACCACCACCACCACCACCTGGTAGCATCAGCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCACCACCACCACCACCACCACCACCACCTGGTAGCATCAGCCTGC  300

seq1  CAGAGAGGTCACTAATGAGACAATGGGGGTCTTTGGGTGTTTTTAACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGTCACTAATGAGACAATGGGGGTCTTTGGGTGTTTTTAACTTG  350

seq1  TTGGTTGTATTTGTTTCTTCTATGTCTAGTTCCCCCCAGGAAACTTACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGTATTTGTTTCTTCTATGTCTAGTTCCCCCCAGGAAACTTACTA  400

seq1  GGGGGAGTTAATTACCCCAGCATAGGATATGAGCTTTCCTTGTGTTATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGTTAATTACCCCAGCATAGGATATGAGCTTTCCTTGTGTTATTG  450

seq1  ACTGATCTCACAATAGATTACCTAGAACTTTAATATTTGTATTCTAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATCTCACAATAGATTACCTAGAACTTTAATATTTGTATTCTAACAT  500

seq1  TAGTTTAGATTGTTATCGGTCTTGTTTGTTTTGCTTAAGTGGAGACTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAGATTGTTATCGGTCTTGTTTGTTTTGCTTAAGTGGAGACTTGT  550

seq1  GCTTTAAGAAGGCAAAATGCTGATGTGTTTGGGATGCATTTAGCACATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAGAAGGCAAAATGCTGATGTGTTTGGGATGCATTTAGCACATCA  600

seq1  CCATCGAGAAG-TTTTCATTTGTTAGATTCTCAGCAAGGCTAAATGTGCG  649
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCATCGAGAAGTTTTTCATTTGTTAGATTCTCAGCAAGGCTAAATGTGCG  650

seq1  TTCTAGGCATGGCTGTGCACTGTTTGTGAGTTCAGCATTGTAAACATCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGCATGGCTGTGCACTGTTTGTGAGTTCAGCATTGTAAACATCAG  700

seq1  AGTGAGGTAGAGCCCAC-CCCTCTGTGACATCAGAGATTAAGGAGCCTTA  748
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGTGAGGTAGAGCCCACTCCCTCTGTGACATCAGAGATTAAGGAGCCTTA  750

seq1  AAGAAAAGGGCTATACCTGGTTTACTCCTAACTCCACTGGAGCCCCGCAA  798
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGAAAAGGGCTATACCTGGTTTACTCCTAACT-CACTGGAGCCCCGCAA  799

seq1  CCCAGCCTTCTCAGCCACGCACTGGTTTTCAGTGATTCAGATACAACAAG  848
      ||||  |||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTTCTCAG-CACGCACTGGTTTTCAGTGATTCAGATACAACAAG  848

seq1  GTCTCTGCGTTGGTTGTGATGTTCATGTCTCAGTGGCTGACT-GGGCTGA  897
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  GTCTCTGCGTTGGTTGTGATG-TCATGTCTCAGTGGCTGACTGGGGCTGA  897

seq1  AATTAGGTTAACTAAGC-ACAGTCTTGACAGT-GTCCCTGG-ATAATTTT  944
      ||||||| | ||||| | ||||| | ||| || |||| ||| ||||||||
seq2  AATTAGGGT-ACTAAACAACAGTTTCGACGGTGGTCCTTGGAATAATTTT  946

seq1  AAACAC-ATAAACAAAGTCTCCCT-CGCAATATTTAAAATTGAGGTTTCC  992
       ||||| |||||||||| |||||| ||||||||||||| |  ||||||||
seq2  -AACACAATAAACAAAGGCTCCCTCCGCAATATTTAAATTGAAGGTTTCC  995

seq1  TACATAACTTTAAGTCAATTCTCTC  1017
      ||||  |||||||||||||||||||
seq2  TACAATACTTTAAGTCAATTCTCTC  1020