BAC Information

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BAC

Clone NameB6Ng01-142J23
Chromosome10 (Build37)
Map Location 52,418,292 - 52,556,146
singlet/doubletdoublet
Overlap geneSlc35f1
Upstream geneRfxdc1, 4933411G06Rik, Vgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa
Downstream genePln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142J23.bB6Ng01-142J23.g
ACCDH940769DH940770
length1,1681,143
definitionDH940769|Mus musculus domesticus DNA, BAC clone: B6Ng01-142J23, 5' end.DH940770|Mus musculus domesticus DNA, BAC clone: B6Ng01-142J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,554,976 - 52,556,146)(52,418,292 - 52,419,446)
sequence
gaattcaaatatcaaaatgtcgtttcttaatggttttttatctgaaatgt
taaagtgttgtgagactagaattgaatttgatgtcttttaacctattcat
attaaatctggatttatttcctgggaaaaaccctactaattactctttaa
tgaaagtaaaagtaaccgattatgatggtcagcttcagtgtcaacttgac
ccaaactagcatcatttgagaatgaagtattaacaggtatctgtctatat
taggttggcctgtaggcatacttgcaggagattatttttaattggtttgt
agagaaaaacccagcccactgtgggtgtcaccattcattaggcaggggtt
tctgaactactgaggagagaagtaattgagctgaatagaagcagacaagc
caatggaaatgattcgttcatgcatttgctctctaatcttggctgtgaaa
gtgaccaacttcctcaaagttccgtccaccctgactggatgtaacctgca
attggaagctaaaataatttctgtcttgcctaaattgatttttgtctgaa
tattttaccacagcagaaatgaaacaacaataaagatgtaatacttaaag
gaaagaatattattttaagagctatataaaaatattttgaacctatattt
aatctaaggacactctgaaaataagctaaacctgaaagtaatatatgcta
gagggaaaaaaagaggtaagaaaaatgatgagttctagctaaacagtatt
tgaggaagcacaggcacattgggaaggttttgtggacagttcaaataata
cattgactttctagtagctacagtgcctcgttaataggctcattactcag
aacaggaggtaggtcctttacttcttaatggtggtgcatgcctatatctc
aatgcttggaaaggtagaggcaggagaattagaagtctagccagctttag
cgatgtataaacttaaaagccagtcttgaggtataagcgactatctcaaa
acaacatgaacacaaagacgatagatagacaataacacctggtcatgctg
aattgcaaaccacaggcagagaacacctagagctcaccaatgcttaagac
tctacgattggtgtcttattgactacatctggatcaaataaacccaaaca
actggggccacacctgtg
gaattccctggaattggagtgttatgagccaacaagtgggtgctgggaat
caaaccagggtcttttgcaagaatagtaagtgctgctaaccattgaacaa
tctgcccagcccctcaaaagtagatttttttaaggcaatctaataaagag
tttcctccagttagaggttttgcccttatggaaagcttctctagaagacc
acccacacagtcacttggactgcacactgcctcaggctgcagatctttct
tctttctgtttcatttaggacttaaatataaaaataaagaatgagaatta
accattagtgttcatgtgaattcagagtattaggagatgaagaaccagtt
tgaattccatcctgctgttgagtaaacagatcaaggtcattgctatacaa
ctcaggaaaatggagttttccagctgggtgtggtggcacacagctgtact
tctatcactgaggagatggaggcaggagaatcctgaatctgaggctagtc
tgggcttcacagtgagttctaagttatgtagttcttggttatgtagctag
accttgtctagaactagcaaataaacaaaacaacaacaaataaacaaaac
ccctaaacccaaacaacagctagaattttctgaaaatattgatgggtgga
cagtgcataggcaactctgcgtttgcatggtttgtgtgttgcagacagga
gagattttatatatgatcagaccacacatatcagtgggtggaaagactgg
atactttggtacatagcatgatgtaattgaatgagactatttgagttaaa
atcagcattcatttggatggtggcttcagtccttacattttgtactacaa
aacatattttataccacaagcattatattatgtgcttttcactgttgctg
ttctttctaaatggcaaaaggcactgatgtggtcacttgccaagtacttg
tcagacctcagagagagatgtagcaagtgaggtggatatttgcccttggc
atggaaagacaagcaggacattccctaagaacagaagagaccaattgatg
gatgtgttgttgaggtcaggacctagggatgcgaaggtgaagttcctatt
gtaaagaccttataggatgagaagaattaggggtgtgggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_52554976_52556146
seq2: B6Ng01-142J23.b_46_1213 (reverse)

seq1  CACAGGTGTG--CCCAGTTGTTTGGTTTTATTTGATTCCAGATGTAGTCA  48
      ||||||||||  ||||||||||||| ||||||||| ||||||||||||||
seq2  CACAGGTGTGGCCCCAGTTGTTTGGGTTTATTTGA-TCCAGATGTAGTCA  49

seq1  AATAGACAACCAATCGTAGAGGTCTTTAAGCATGGTGGAGCTCTA-GTGT  97
      |  |||| |||||||||||| ||| |||||||| |  |||||||| ||||
seq2  ATAAGAC-ACCAATCGTAGA-GTC-TTAAGCATTGGTGAGCTCTAGGTGT  96

seq1  TCTCTGCCTGTGGTTTGCATTTCAGCATGA-CAGGTGTTATTTGTCTTAT  146
      ||||||||||||||||||| |||||||||| ||||||||| ||||| |||
seq2  TCTCTGCCTGTGGTTTGCAATTCAGCATGACCAGGTGTTA-TTGTC-TAT  144

seq1  CTATCTGTCTTTGTGTTCATTGTTGTTTTGAGATAGTCGCTTATACCTC-  195
      ||||| ||||||||||||| ||||||||||||||||||||||||||||| 
seq2  CTATC-GTCTTTGTGTTCA-TGTTGTTTTGAGATAGTCGCTTATACCTCA  192

seq1  AGACTGGCTTTTAAGTTTATACATCGCTAAAGCTGGCCTAGACTTCTAAT  245
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGACTGGCTTTTAAGTTTATACATCGCTAAAGCTGG-CTAGACTTCTAAT  241

seq1  TCTCCTGCCTCTACC-TTCCAAGCATTGAGATTATAGGCATGCACCACCA  294
      ||||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  TCTCCTGCCTCTACCTTTCCAAGCATTGAGA-TATAGGCATGCACCACCA  290

seq1  TTAAGAAGTAAAGGACCTA-CTCCTGTTCTGAGTAATGAGCCTATTAACG  343
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTAAGAAGTAAAGGACCTACCTCCTGTTCTGAGTAATGAGCCTATTAACG  340

seq1  AGGCACTGTAGCTACTAGAAAGTCAATGTATTATTTGAACTGTCCACAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTGTAGCTACTAGAAAGTCAATGTATTATTTGAACTGTCCACAAA  390

seq1  ACCTTCCCAATGTGCCTGTGCTTCCTCAAATACTGTTTAGCTAGAACTCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCCAATGTGCCTGTGCTTCCTCAAATACTGTTTAGCTAGAACTCA  440

seq1  TCATTTTTCTTACCTCTTTTTTTCCCTCTAGCATATATTACTTTCAGGTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTCTTACCTCTTTTTTTCCCTCTAGCATATATTACTTTCAGGTT  490

seq1  TAGCTTATTTTCAGAGTGTCCTTAGATTAAATATAGGTTCAAAATATTTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTATTTTCAGAGTGTCCTTAGATTAAATATAGGTTCAAAATATTTT  540

seq1  TATATAGCTCTTAAAATAATATTCTTTCCTTTAAGTATTACATCTTTATT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGCTCTTAAAATAATATTCTTTCCTTTAAGTATTACATCTTTATT  590

seq1  GTTGTTTCATTTCTGCTGTGGTAAAATATTCAGACAAAAATCAATTTAGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTCATTTCTGCTGTGGTAAAATATTCAGACAAAAATCAATTTAGG  640

seq1  CAAGACAGAAATTATTTTAGCTTCCAATTGCAGGTTACATCCAGTCAGGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGAAATTATTTTAGCTTCCAATTGCAGGTTACATCCAGTCAGGG  690

seq1  TGGACGGAACTTTGAGGAAGTTGGTCACTTTCACAGCCAAGATTAGAGAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGGAACTTTGAGGAAGTTGGTCACTTTCACAGCCAAGATTAGAGAG  740

seq1  CAAATGCATGAACGAATCATTTCCATTGGCTTGTCTGCTTCTATTCAGCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCATGAACGAATCATTTCCATTGGCTTGTCTGCTTCTATTCAGCT  790

seq1  CAATTACTTCTCTCCTCAGTAGTTCAGAAACCCCTGCCTAATGAATGGTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACTTCTCTCCTCAGTAGTTCAGAAACCCCTGCCTAATGAATGGTG  840

seq1  ACACCCACAGTGGGCTGGGTTTTTCTCTACAAACCAATTAAAAATAATCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCACAGTGGGCTGGGTTTTTCTCTACAAACCAATTAAAAATAATCT  890

seq1  CCTGCAAGTATGCCTACAGGCCAACCTAATATAGACAGATACCTGTTAAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAGTATGCCTACAGGCCAACCTAATATAGACAGATACCTGTTAAT  940

seq1  ACTTCATTCTCAAATGATGCTAGTTTGGGTCAAGTTGACACTGAAGCTGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTCTCAAATGATGCTAGTTTGGGTCAAGTTGACACTGAAGCTGA  990

seq1  CCATCATAATCGGTTACTTTTACTTTCATTAAAGAGTAATTAGTAGGGTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATAATCGGTTACTTTTACTTTCATTAAAGAGTAATTAGTAGGGTT  1040

seq1  TTTCCCAGGAAATAAATCCAGATTTAATATGAATAGGTTAAAAGACATCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGGAAATAAATCCAGATTTAATATGAATAGGTTAAAAGACATCA  1090

seq1  AATTCAATTCTAGTCTCACAACACTTTAACATTTCAGATAAAAAACCATT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAATTCTAGTCTCACAACACTTTAACATTTCAGATAAAAAACCATT  1140

seq1  AAGAAACGACATTTTGATATTTGAATTC  1171
      ||||||||||||||||||||||||||||
seq2  AAGAAACGACATTTTGATATTTGAATTC  1168

seq1: chr10_52418292_52419446
seq2: B6Ng01-142J23.g_69_1211

seq1  GAATTCCCTGGAATTGGAGTGTTATGAGCCAACAAGTGGGTGCTGGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGAATTGGAGTGTTATGAGCCAACAAGTGGGTGCTGGGAAT  50

seq1  CAAACCAGGGTCTTTTGCAAGAATAGTAAGTGCTGCTAACCATTGAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGGGTCTTTTGCAAGAATAGTAAGTGCTGCTAACCATTGAACAA  100

seq1  TCTGCCCAGCCCCTCAAAAGTAGATTTTTTTAAGGCAATCTAATAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCAGCCCCTCAAAAGTAGATTTTTTTAAGGCAATCTAATAAAGAG  150

seq1  TTTCCTCCAGTTAGAGGTTTTGCCCTTATGGAAAGCTTCTCTAGAAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCAGTTAGAGGTTTTGCCCTTATGGAAAGCTTCTCTAGAAGACC  200

seq1  ACCCACACAGTCACTTGGACTGCACACTGCCTCAGGCTGCAGATCTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACAGTCACTTGGACTGCACACTGCCTCAGGCTGCAGATCTTTCT  250

seq1  TCTTTCTGTTTCATTTAGGACTTAAATATAAAAATAAAGAATGAGAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGTTTCATTTAGGACTTAAATATAAAAATAAAGAATGAGAATTA  300

seq1  ACCATTAGTGTTCATGTGAATTCAGAGTATTAGGAGATGAAGAACCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAGTGTTCATGTGAATTCAGAGTATTAGGAGATGAAGAACCAGTT  350

seq1  TGAATTCCATCCTGCTGTTGAGTAAACAGATCAAGGTCATTGCTATACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCCATCCTGCTGTTGAGTAAACAGATCAAGGTCATTGCTATACAA  400

seq1  CTCAGGAAAATGGAGTTTTCCAGCTGGGTGTGGTGGCACACAGCTGTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAAAATGGAGTTTTCCAGCTGGGTGTGGTGGCACACAGCTGTACT  450

seq1  TCTATCACTGAGGAGATGGAGGCAGGAGAATCCTGAATCTGAGGCTAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCACTGAGGAGATGGAGGCAGGAGAATCCTGAATCTGAGGCTAGTC  500

seq1  TGGGCTTCACAGTGAGTTCTAAGTTATGTAGTTCTTGGTTATGTAGCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTCACAGTGAGTTCTAAGTTATGTAGTTCTTGGTTATGTAGCTAG  550

seq1  ACCTTGTCTAGAACTAGCAAATAAACAAAACAACAACAAATAAACAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTCTAGAACTAGCAAATAAACAAAACAACAACAAATAAACAAAAC  600

seq1  CCCTAAACCCAAACAACAGCTAGAATTTTCTGAAAATATTGATGGGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAACCCAAACAACAGCTAGAATTTTCTGAAAATATTGATGGGTGGA  650

seq1  CAGTGCATAGGCAACTCTGCGTTTGCATGGTTTGTGTGTTGCAGACAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCATAGGCAACTCTGCGTTTGCATGGTTTGTGTGTTGCAGACAGGA  700

seq1  GAGATTTTATATATGATCAGACCACACATATCAGTGGGTGGAAAGACTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTATATATGATCAGACCACACATATCAGTGGGTGGAAAGACTGG  750

seq1  ATACTTTGGTACATAGCATGATGTAATTGAATGAGACTATTTGAGTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGGTACATAGCATGATGTAATTGAATGAGACTATTTGAGTTAAA  800

seq1  ATCAGCATTCATTTGGATGGTGGCTTCAGTCCTTACATTTTGTACTACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCATTCATTTGGATGGTGGCTTCAGTCCTTACATTTTGTACTACAA  850

seq1  AACATATTTTATACCACAAAGCATTATATTATGTGCTTTTCAACTGTTTG  900
      ||||||||||||||||| ||||||||||||||||||||||| |||| |||
seq2  AACATATTTTATACCAC-AAGCATTATATTATGTGCTTTTC-ACTG-TTG  897

seq1  CTGTTCTTTTCTAAATGGCAAAAGGCACTGATGTGGTCACCTTGCCAAGT  950
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  CTGTTC-TTTCTAAATGGCAAAAGGCACTGATGTGGTCA-CTTGCCAAGT  945

seq1  ACTTTGTCAGACCTCAGAAGAGGAAGATGGTAGCAAGTGAGGTGGATATT  1000
      || |||||||||||||| ||||  |||| |||||||||||||||||||||
seq2  AC-TTGTCAGACCTCAG-AGAG--AGAT-GTAGCAAGTGAGGTGGATATT  990

seq1  TGCCCTTGGCATTGAAAGACAAGCAGGGACA-TCCCTAAGAACAGAAGGA  1049
      |||||||||||| |||||||||||| ||||| ||||||||||||||| ||
seq2  TGCCCTTGGCATGGAAAGACAAGCA-GGACATTCCCTAAGAACAGAA-GA  1038

seq1  GA-CAATGGATGAGTTGTG-TGTGGAGGTCAAGGACTAGGGAAAGGCAGA  1097
      || |||| |||| | |||| ||| ||||||| |  ||||||  | ||  |
seq2  GACCAATTGATG-GATGTGTTGTTGAGGTCAGGACCTAGGG--ATGCGAA  1085

seq1  GGTGAAGTTTCCTA-TGTGAAGACATTATAGGATGAGAAGAATAAAGGGT  1146
      ||||||| |||||| ||| ||||| |||||||||||||||||| | ||||
seq2  GGTGAAG-TTCCTATTGTAAAGACCTTATAGGATGAGAAGAATTAGGGGT  1134

seq1  GTGGGGGTG  1155
      |||||||||
seq2  GTGGGGGTG  1143