BAC Information

Click to search

BAC

Clone NameB6Ng01-142O11
Chromosome10 (Build37)
Map Location 30,106,891 - 30,108,059
singlet/doubletsinglet
Overlap genenone
Upstream geneRspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815
Downstream geneTrmt11, Hint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448, Hddc2, Tpd52l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142O11.bB6Ng01-142O11.g
ACCDH940982DH940983
length1,1401,175
definitionDH940982|Mus musculus domesticus DNA, BAC clone: B6Ng01-142O11, 5' end.DH940983|Mus musculus domesticus DNA, BAC clone: B6Ng01-142O11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacccagaactgcagcctgtggcagatacattggtggaatggtt
ccattcattatcttatggtgctgatgttgatgggtcaccaaacattaagc
gcccagctatttttaattactccatgttgttgaattgcagttgatttaag
aaaaattgagcccaacagttttttttttctttagctcgccattatagtct
ttaatgtgaaaactggggaaggaatagtcacaaaacagcttgtcacaaga
gcagagggaatgataatactgtcaagcagagcttcttttgtgttgtactc
tcaaatcaggccttgagaaaccatgtcttcaatttgctcttttgaaagtt
caaatggtttccactagtagtcaatgaaacaccaaagtagatgataatat
tcctggagtgagtgaattgcttgatcaaaattaagaaaaaaatatgagta
agtggtttttctttacttagcaccctcttttcttgattttcatgttctga
attacttctccttcagtacgtttagccaaggatccaaacttctgtcagtg
ttggagccaggggtgttcctaaggtgtcatgctgacaaaaaaagatattt
ggagtaatggcttgctggtctgtttgtgacagtgaaaccctaattttgta
ggccatctgtctttctcatcagacagaacccccaagcagaaactttggga
aaaaaaaatctgaagagtctctggtagttatgtgagtcctacctcatagt
tgttgggcatcacataaaatgtgaacaagtatatcctccttagtttaagc
tagctctagtttaaaggagaaaagatttgagcatacatttttgattcttg
acacctccttgtgtctccttgctctcattgctatgtcggtgggacatgct
tataaacagaatatctgaaattactccaggtagtaggtatcaaccttcat
ttatttggaccaagacattactcagctgaaactttttatcaataacacac
tcttaggtttatattgtagatagatttcttcttctaagtttcttatcaat
tttaggaggaacaagttaaactgatcgaattataaatttggctatttcat
ttttatttgggaaatcgaattcttgaatctgaagaaagaa
gaattctctttttgaggatacatttaattactgacttaaatctcattcat
tttgtgaaactgtttaaattatttttatgttccagatttaataggttatt
cacatttagaaatgtatccatttcatctaggctttccagcatttgtgaat
ataaattttcaaagtactccctcatgattttctaaattttgttggagtca
gatgtatttagtcactcccttttgttgtgaactttgtagtttagtgttct
ctttttatttgttgcctatgtccaattttactgattgttcaaagaagcaa
cggctttgttgattctgtatattgtgtttttagtgtctctgtcattattc
ttttaatctttattatttattgccatcaactggatttgaggctagcctac
tatttttctaaaggtacatcatcagatcatttatttgatatatcttattt
tgtgatgcactgatagcttctacctttcctccagggactgctttggtttc
atcgtagatgacctgttgtgctctcattttcagttgactctaggaattat
ttttcttttcttcattatttcctcaatgacatgctgtttattcaaaaata
catttttcatattttcatgagttatttttgtagtttctgagctttcactt
gctgtgctactgttatctgttaatatataagaaattatcttggttgtatc
tattgaggcctgctctgggtcataagctatgttaaatttggtgaacctta
caatcgctgctaaaaagaatgtgttttctgtatatgttacatggaatatt
ctgtaggtatttgttaaatctaattggtctagggtataatttagccctga
aatttcttggttggttgctaatttagaagatctatctgaatatgacatta
gttttgcatcacccactattcttgtgtcaggacttatgttgccttttatg
actccttggtgttatttatgaaatagggatcgtcaatattcgttataagt
tggtatgatgtatgcatcagatgcatcggtccatttataatatgcttgtg
gacccctatctttcagaatgatttctgatgattcttttttacacgatata
ttatgcctggctattaatggttcattgttgaagtgatcatcctttgacac
cacgattgtcaagtgtagcacaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_30106891_30108059
seq2: B6Ng01-142O11.b_49_1188 (reverse)

seq1  TTCTTTCAAAATGATTCAAGAAATATTTTGGATTTTCTCCCAAAATAAAA  50
      |||||||   | ||||||||||     || |||||    || ||||||||
seq2  TTCTTTCTTCA-GATTCAAGAA-----TTCGATTT----CCCAAATAAAA  40

seq1  AAATTAAAAATTAGCCAAATTATTATATTCTGATTCAAGTTTTTAACTTG  100
      |   | |||  |||||||||  ||||| |  || |||    |||||||||
seq2  A---TGAAA--TAGCCAAAT--TTATAATTCGA-TCA---GTTTAACTTG  79

seq1  TTTCTTCTTAAAAATGGATAAAGAAAACTTAGGAGAAGAAAATCTATCCT  150
      || || ||  ||||| |||||   |||||||| ||||| |||||||| ||
seq2  TTCCTCCT--AAAATTGATAA--GAAACTTAGAAGAAG-AAATCTAT-CT  123

seq1  ACAATATAAAACTAAGAGTGTGTTATTGATAAAAAGTTGTCAGCTGAGTA  200
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  ACAATATAAACCTAAGAGTGTGTTATTGATAAAAAGTT-TCAGCTGAGTA  172

seq1  ATGTCTTGGTCCAAATAAATGAAGGTTGATAACCTACTACCTGGAGTAAT  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGTCTTGGTCCAAATAAATGAAGGTTGAT-ACCTACTACCTGGAGTAAT  221

seq1  TTCAGATATTCTGTTTATAAGCATGTCCCACCGACATAGCAATGAGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATATTCTGTTTATAAGCATGTCCCACCGACATAGCAATGAGAGCA  271

seq1  AGGAGACACAAGGAGGTGTCAAGAATCAAAAATGTATGCTCAAATCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACACAAGGAGGTGTCAAGAATCAAAAATGTATGCTCAAATCTTTT  321

seq1  CTCCTTTAAACTAGAGCTAGCTTAAACTAAGGAGGATATACTTGTTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTAAACTAGAGCTAGCTTAAACTAAGGAGGATATACTTGTTCACA  371

seq1  TTTTATGTGATGCCCAACAACTATGAGGTAGGACTCACATAACTACCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTGATGCCCAACAACTATGAGGTAGGACTCACATAACTACCAGA  421

seq1  GACTCTTCAGATTTTTTTTTCCCAAAGTTTCTGCTTGGGGGTTCTGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCAGATTTTTTTTTCCCAAAGTTTCTGCTTGGGGGTTCTGTCTG  471

seq1  ATGAGAAAGACAGATGGCCTACAAAATTAGGGTTTCACTGTCACAAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAGACAGATGGCCTACAAAATTAGGGTTTCACTGTCACAAACAG  521

seq1  ACCAGCAAGCCATTACTCCAAATATCTTTTTTTGTCAGCATGACACCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAAGCCATTACTCCAAATATCTTTTTTTGTCAGCATGACACCTTA  571

seq1  GGAACACCCCTGGCTCCAACACTGACAGAAGTTTGGATCCTTGGCTAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACCCCTGGCTCCAACACTGACAGAAGTTTGGATCCTTGGCTAAAC  621

seq1  GTACTGAAGGAGAAGTAATTCAGAACATGAAAATCAAGAAAAGAGGGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAAGGAGAAGTAATTCAGAACATGAAAATCAAGAAAAGAGGGTGC  671

seq1  TAAGTAAAGAAAAACCACTTACTCATATTTTTTTCTTAATTTTGATCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAAGAAAAACCACTTACTCATATTTTTTTCTTAATTTTGATCAAG  721

seq1  CAATTCACTCACTCCAGGAATATTATCATCTACTTTGGTGTTTCATTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCACTCACTCCAGGAATATTATCATCTACTTTGGTGTTTCATTGAC  771

seq1  TACTAGTGGAAACCATTTGAACTTTCAAAAGAGCAAATTGAAGACATGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTGGAAACCATTTGAACTTTCAAAAGAGCAAATTGAAGACATGGT  821

seq1  TTCTCAAGGCCTGATTTGAGAGTACAACACAAAAGAAGCTCTGCTTGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGGCCTGATTTGAGAGTACAACACAAAAGAAGCTCTGCTTGACA  871

seq1  GTATTATCATTCCCTCTGCTCTTGTGACAAGCTGTTTTGTGACTATTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATCATTCCCTCTGCTCTTGTGACAAGCTGTTTTGTGACTATTCCT  921

seq1  TCCCCAGTTTTCACATTAAAGACTATAATGGCGAGCTAAAGAAAAAAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGTTTTCACATTAAAGACTATAATGGCGAGCTAAAGAAAAAAAAA  971

seq1  ACTGTTGGGCTCAATTTTTCTTAAATCAACTGCAATTCAACAACATGGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGGGCTCAATTTTTCTTAAATCAACTGCAATTCAACAACATGGAG  1021

seq1  TAATTAAAAATAGCTGGGCGCTTAATGTTTGGTGACCCATCAACATCAGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAAATAGCTGGGCGCTTAATGTTTGGTGACCCATCAACATCAGC  1071

seq1  ACCATAAGATAATGAATGGAACCATTCCACCAATGTATCTGCCACAGGCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAAGATAATGAATGGAACCATTCCACCAATGTATCTGCCACAGGCT  1121

seq1  GCAGTTCTGGGTGGAATTC  1169
      |||||||||||||||||||
seq2  GCAGTTCTGGGTGGAATTC  1140