BAC Information

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BAC

Clone NameB6Ng01-143H24
Chromosome10 (Build37)
Map Location 63,414,315 - 63,564,539
singlet/doubletdoublet
Overlap geneCtnna3, Lrrtm3
Upstream geneDna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143H24.bB6Ng01-143H24.g
ACCDH941419DH941420
length2301,098
definitionDH941419|Mus musculus domesticus DNA, BAC clone: B6Ng01-143H24, 5' end.DH941420|Mus musculus domesticus DNA, BAC clone: B6Ng01-143H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,564,312 - 63,564,539)(63,414,315 - 63,415,436)
sequence
gattctgttgttatcatttctttctttgtagttgataattgtatttattg
ataacatccttgaaattccaactgtactagtaagagagaatgcctggcct
tgggttagtggtggggaggaagaggttaattcttgaagcctccataaatc
atttgtggctgagacataataatagatatttggcctgtctctaatttctg
acaaagagtgtcaaaaacaaaccaaacaac
gaattccagggagaaacaactgtggggccttgctctatttaactgtgaat
ggatctgactctctgaatctctctctctctctctctctctctatcccttc
tcccccctctctctcccagctcaagtagccacttcaggagctgaatgtac
tcctaagcacctaatgaaggaggttgtgagccgcatatttttagaattaa
tgcatccaatactgacaatgttcttaagtagcttgattcttaaatgtgtg
gcttaaatggattcttaaatgcatttcttgggtctggagaagatggctca
gcacttaagagtgtgtcctgctcttgcagagggctcaagtttgtttttta
gtaaccgtgcgggacagctcacaactgtaattctacttcagagattttga
taccttcttctggcttctgcaggccactgaattcacatgaactcacttca
cacacacacacacacacacacacacacacacacacacacacaaacacaca
aacacacacaaacacacacacacaagcacacacaagcacacacatttaaa
agctatcttaaagtttgtaataaacacaaattttaaatgaaagaaatctc
gctgaagagctactgacaattgatagctgataggagaggactctttgtgg
gtgtgtccctgataggccagctgtaccccagtggaaggccacacatacac
gtgtatatgggcggcacagactgaactagatatatctgcaaaacaaaaca
aaaataacacaattatgtgcaggggcagttatggggtgagttggggaaag
gggatgaatatgaccctaatacattttgtgaattcataaagagctaaaat
ggagaggaaggaggaaggaagagatgactagagtttgggtctagaacaac
agggtcttatatgaagaccacagatagtgagatcttctatctgagtggtc
tcagaagaaccagactctatccctacttatctgatttaccttgcctggaa
cattagcctcaaaattgtaaagcagaagcttctgtcactaagacatgcgg
atgcatccgcagtgaaccctagtatcggtacagctggatttgtaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_63564312_63564539
seq2: B6Ng01-143H24.b_45_273 (reverse)

seq1  GTTGTTT-GTTTGTTTTTGGCACTCTTTGTCAGAAATTAGAGACAGGCCA  49
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTGTTTGGTTTGTTTTTGACACTCTTTGTCAGAAATTAGAGACAGGCCA  50

seq1  AATATCTATTATTATGTCTCAGCCACAAATGATTTATGGTGGCTTCAAGA  99
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATATCTATTATTATGTCTCAGCCACAAATGATTTATGGAGGCTTCAAGA  100

seq1  ATTAACCTCTTCCTCCCCACCACTAACCCAAGGCCAGGCATTCTCTCTTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCTCTTCCTCCCCACCACTAACCCAAGGCCAGGCATTCTCTCTTA  150

seq1  CTAGTACAGTTGGAATTTCAAGGATGTTATCAATAAATACAATTATCAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTACAGTTGGAATTTCAAGGATGTTATCAATAAATACAATTATCAAC  200

seq1  TACAAAGAAAGAAATGATAACAACAGAAT  228
      |||||||||||||||||||||||||||||
seq2  TACAAAGAAAGAAATGATAACAACAGAAT  229

seq1: chr10_63414315_63415436
seq2: B6Ng01-143H24.g_68_1165

seq1  GAATTCCAGGGAGAAACAACTGTGGGGCCTTGCTCTATTTAACTGTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAGAAACAACTGTGGGGCCTTGCTCTATTTAACTGTGAAT  50

seq1  GGATCTGACTCTCTGAATCTCTCTCTCTCTCTCTCTCTCTCTATCCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGACTCTCTGAATCTCTCTCTCTCTCTCTCTCTCTCTATCCCTTC  100

seq1  TCCCCCCTCTCTCTCCCAGCTCAAGTAGCCACTTCAGGAGCTGAATGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTCTCTCTCCCAGCTCAAGTAGCCACTTCAGGAGCTGAATGTAC  150

seq1  TCCTAAGCACCTAATGAAGGAGGTTGTGAGCCGCATATTTTTAGAATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGCACCTAATGAAGGAGGTTGTGAGCCGCATATTTTTAGAATTAA  200

seq1  TGCATCCAATACTGACAATGTTCTTAAGTAGCTTGATTCTTAAATGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCAATACTGACAATGTTCTTAAGTAGCTTGATTCTTAAATGTGTG  250

seq1  GCTTAAATGGATTCTTAAATGCATTTCTTGGGTCTGGAGAAGATGGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAATGGATTCTTAAATGCATTTCTTGGGTCTGGAGAAGATGGCTCA  300

seq1  GCACTTAAGAGTGTGTCCTGCTCTTGCAGAGGGCTCAAGTTTGTTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTAAGAGTGTGTCCTGCTCTTGCAGAGGGCTCAAGTTTGTTTTTTA  350

seq1  GTAACCGTGCGGGACAGCTCACAACTGTAATTCTACTTCAGAGATTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCGTGCGGGACAGCTCACAACTGTAATTCTACTTCAGAGATTTTGA  400

seq1  TACCTTCTTCTGGCTTCTGCAGGCCACTGAATTCACATGAACTCACTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCTTCTGGCTTCTGCAGGCCACTGAATTCACATGAACTCACTTCA  450

seq1  CACACACACACACACACACACACACACACACACACACACACAAACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACAAACACACA  500

seq1  AACACACACAAACACACACACACAAGCACACACAAGCACACACATTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACAAACACACACACACAAGCACACACAAGCACACACATTTAAA  550

seq1  AGCTATCTTAAAGTTTGTAATAAACACAAATTTTAAATGAAAGAAATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCTTAAAGTTTGTAATAAACACAAATTTTAAATGAAAGAAATCTC  600

seq1  GCTGAAGAGCTACTGACAATTGATAGCTGATAGGAGAGGACTCTTTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGAGCTACTGACAATTGATAGCTGATAGGAGAGGACTCTTTGTGG  650

seq1  GTGTGTCCCTGATAGGCCAGCTGTACCCCAGTGGAAGGCCACACATACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCCCTGATAGGCCAGCTGTACCCCAGTGGAAGGCCACACATACAC  700

seq1  GTGTATATGGGCGGCACAGACTGAACTAGATATATCTGCAAAACAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGTATATGGGCGGCACAGACTGAACTAGATATATCTGCAAAACAAAAC-  749

seq1  AAAAATAACACAAATTATGTGCAGGGGGCAGTTATGGGGTGAGTTGGGGA  800
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  AAAAATAACAC-AATTATGTGCA-GGGGCAGTTATGGGGTGAGTTGGGGA  797

seq1  AAGGGGATGAATATGACCTAAATACATTTTATGAAATTCATAAAGAGCTA  850
      ||||||||||||||||||  |||||||||| || ||||||||||||||| 
seq2  AAGGGGATGAATATGACCCTAATACATTTTGTG-AATTCATAAAGAGCT-  845

seq1  AAAATGAAGAGGAAGGAGGAAGGAAGAAGATAGACTAGAGTTTGGGGTCT  900
      |||||| ||||||||||||||||||| |||| ||||||||||| ||||||
seq2  AAAATGGAGAGGAAGGAGGAAGGAAG-AGAT-GACTAGAGTTT-GGGTCT  892

seq1  AGAAACAAACAGGGTCCTTATATGAAGA-CACAGATAGTGAAGATCTACT  949
      ||||   |||||||| |||||||||||| ||||||||||| |||||| ||
seq2  AGAA--CAACAGGGT-CTTATATGAAGACCACAGATAGTG-AGATCTTCT  938

seq1  ATCTGAGTGGTCTCAGAAGAAACCAGACTCTATCCCTAACTTAATCTAGA  999
      ||||||||||||||||||| ||||||||||||||||| |||| |||| ||
seq2  ATCTGAGTGGTCTCAGAAG-AACCAGACTCTATCCCT-ACTT-ATCT-GA  984

seq1  TTTATAACTTGGTCTGGAACATGTAGCCTCAAGAATTGTAAAGCAGTAAG  1049
      |||   || | | ||||||||| ||||||||| ||||||||||||| |||
seq2  TTT---ACCTTGCCTGGAACAT-TAGCCTCAA-AATTGTAAAGCAG-AAG  1028

seq1  CTTCTGTCATCTAAGACATGCGTGTTGCATCACGATGGCATCCCTAGTAA  1099
      ||||||||| |||||||||||| | |||||| ||  |  | |||||||| 
seq2  CTTCTGTCA-CTAAGACATGCG-GATGCATC-CGCAGTGAACCCTAGTA-  1074

seq1  TCCAGTACAGCTGAATT--TAAGAA  1122
        | ||||||||| |||  ||||||
seq2  -TCGGTACAGCTGGATTTGTAAGAA  1098