BAC Information

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BAC

Clone NameB6Ng01-145A16
Chromosome10 (Build37)
Map Location 124,774,100 - 124,898,771
singlet/doubletdoublet
Overlap geneLOC100042987, EG668313
Upstream gene4930503E24Rik, LOC671416, Slc16a7
Downstream geneLOC100042992, LOC668317, LOC100042994, Lrig3, LOC100043547
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145A16.bB6Ng01-145A16.g
ACCDH942556DH942557
length9651,133
definitionDH942556|Mus musculus domesticus DNA, BAC clone: B6Ng01-145A16, 5' end.DH942557|Mus musculus domesticus DNA, BAC clone: B6Ng01-145A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,774,100 - 124,775,065)(124,897,625 - 124,898,771)
sequence
gaattcaggagaaacttgaggagaaagaaaatgattaaaatatattgtat
gaaaaaaattacagtaaacaaaatccctttaacaaggacgttgtacccaa
aacatgtatttagccaactaagcctgaaggtaaaggccgtatttaatggc
tacccctgatgtggacccacagagcacaccttgtgagtcttaggactgag
gacacagtgatgctgtgtggtggaagagtgatggtgtgtagtagaagaat
gttttgtgtctactagagataagctggctgtgctcaccctcttcccttta
aaggaattctagaaagagagatagagaagccgtaggaatagtaggaatat
ggcacttcctgctaactcattgcaacatgtttttttgtgtgctttttgtt
tctttttaaagtcacatttaagttaaagccgcggcaagaaaggccaatga
ctggtatagagtgttgaagttcatctttgaggccatcaaagacctgtgta
catcatcagtcctttggggaaagccccttggcactctgtgactcttagct
gtgttcaggtgaatgagatgggaattcgaaaatgtgggaaaggtagaatt
gtaaagtggggacagacagacggtcctccctgaatggtaccacaaaagga
gcagctctgtgtggagaatgacacagaaatctcatttagccacgagcaca
gtgcattgtctgtttcttaatcacatacaggacaggcagtgaggataatg
ttatctaaatcggcggctcctctcgtgtttcagatgtctgtgcaaagaat
gtgttttgtttgtttttctttatagaaagccggggggatgtaaaagacag
gcgcaaacaggctgctctgtaagagtaatgcacaattaaaactgtttggc
acacacagtgtggagcactgggcctctgagtggtagctggatgcagaaaa
cagatctttacctca
gaattcatattcattcatgaattgctacctccatttctgttctctaccag
tctctgccaccatttcctcttacctaatctatgtgtgtatatttagattt
tttttctagtattttgtgattacaaatgatgtgaaaaatcaatggctgtt
ggcatcatgctatttgcattgttggaatcctgcctgagggtgaactcctg
tgggtggggttgtaagataaatgtatgtggacttttggcatatattgccc
agaaattgtatgatagagtggaacgggtcaagtgaatttggtgatggata
gtggctaaagttgcagaatggtaaggtaatactcatgaaaggatatttgg
taaatttcagatgtctttttcagtcacggctgtgtcacctttctggagat
gaagatataaaggtcgtttccttataaacaagttaagtactactgcttgg
ttgctgttctgtagcgttctgctctggctgcctcctgatgacaaggttac
atcttctcctcctcctccttcctctagtttgatgctctatgctgttggcc
ctttgtatccatcaaccttatcttcaagagaacaaccgctaaatttgccc
agtctttaaaccagctttatcatccattcatctcttcttaaaaatactat
ggctattatctaagatttataaatgtttctttattagtttcccaatggat
ggtttttactttccatagcaatacagtccccacccttttgcactcaacta
gtctttttatttattaattttaaaaaaaaatttttttcttttttttttac
taggtattttcctcatttacatttccaatgctatcccaaaagtcccccat
accctccccaccactcctctacccacccactgcacttttggccctgacat
tcccttgtactggggcatataaagtttacaagtccaatggcttctctttc
cagtgatgatgactaggccatcttttgaaacatatgcagctagtgtcaga
gttccgggatactggttagttcataatgtggtccactatagggtgagaat
ccttcgcttcttggatatttcttctagcctctcattggggccctgtaatc
attccactctggttttgctaggccaggcatagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_124774100_124775065
seq2: B6Ng01-145A16.b_47_1011

seq1  GAATTCAGGAGAAACTTGAGGAGAAAGAAAATGATTAAAATATATTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGAAACTTGAGGAGAAAGAAAATGATTAAAATATATTGTAT  50

seq1  GAAAAAAATTACAGTAAACAAAATCCCTTTAACAAGGACGTTGTACCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATTACAGTAAACAAAATCCCTTTAACAAGGACGTTGTACCCAA  100

seq1  AACATGTATTTAGCCAACTAAGCCTGAAGGTAAAGGCCGTATTTAATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTATTTAGCCAACTAAGCCTGAAGGTAAAGGCCGTATTTAATGGC  150

seq1  TACCCCTGATGTGGACCCACAGAGCACACCTTGTGAGTCTTAGGACTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCTGATGTGGACCCACAGAGCACACCTTGTGAGTCTTAGGACTGAG  200

seq1  GACACAGTGATGCTGTGTGGTGGAAGAGTGATGGTGTGTAGTAGAAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGTGATGCTGTGTGGTGGAAGAGTGATGGTGTGTAGTAGAAGAAT  250

seq1  GTTTTGTGTCTACTAGAGATAAGCTGGCTGTGCTCACCCTCTTCCCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGTCTACTAGAGATAAGCTGGCTGTGCTCACCCTCTTCCCTTTA  300

seq1  AAGGAATTCTAGAAAGAGAGATAGAGAAGCCGTAGGAATAGTAGGAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTCTAGAAAGAGAGATAGAGAAGCCGTAGGAATAGTAGGAATAT  350

seq1  GGCACTTCCTGCTAACTCATTGCAACATGTTTTTTTGTGTGCTTTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTCCTGCTAACTCATTGCAACATGTTTTTTTGTGTGCTTTTTGTT  400

seq1  TCTTTTTAAAGTCACATTTAAGTTAAAGCCGCGGCAAGAAAGGCCAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTAAAGTCACATTTAAGTTAAAGCCGCGGCAAGAAAGGCCAATGA  450

seq1  CTGGTATAGAGTGTTGAAGTTCATCTTTGAGGCCATCAAAGACCTGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATAGAGTGTTGAAGTTCATCTTTGAGGCCATCAAAGACCTGTGTA  500

seq1  CATCATCAGTCCTTTGGGGAAAGCCCCTTGGCACTCTGTGACTCTTAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCAGTCCTTTGGGGAAAGCCCCTTGGCACTCTGTGACTCTTAGCT  550

seq1  GTGTTCAGGTGAATGAGATGGGAATTCGAAAATGTGGGAAAGGTAGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGGTGAATGAGATGGGAATTCGAAAATGTGGGAAAGGTAGAATT  600

seq1  GTAAAGTGGGGACAGACAGACGGTCCTCCCTGAATGGTACCACAAAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTGGGGACAGACAGACGGTCCTCCCTGAATGGTACCACAAAAGGA  650

seq1  GCAGCTCTGTGTGGAGAATGACACAGAAATCTCATTTAGCCACGAGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCTGTGTGGAGAATGACACAGAAATCTCATTTAGCCACGAGCACA  700

seq1  GTGCATTGTCTGTTTCTTAATCACATACAGGACAGGCAGTGAGGATAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTGTCTGTTTCTTAATCACATACAGGACAGGCAGTGAGGATAATG  750

seq1  TTATCTAAATCGGCGGCTCCTCTCGTGTTTCAGATGTCTGTGCAAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAAATCGGCGGCTCCTCTCGTGTTTCAGATGTCTGTGCAAAGAAT  800

seq1  GTGTTTTGTTTG-TTTTCCTTATAGAAAGCCGGGGGGATGTTAAAAGACA  849
      |||||||||||| ||||| ||||||||||||||||||||| |||||||||
seq2  GTGTTTTGTTTGTTTTTCTTTATAGAAAGCCGGGGGGATG-TAAAAGACA  849

seq1  GGCGCAGACAGGCTGCTCTGTAAGAGTAATGCACAATTAAAAACTGTTTG  899
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  GGCGCAAACAGGCTGCTCTGTAAGAGTAATGCACAATT-AAAACTGTTTG  898

seq1  GCACACACAGTGTGGAGCCACT-GGCCTCTGTGTGGGTAGCTGGATGCAG  948
      ||||||||||||||||| |||| |||||||| || |||||||||||||||
seq2  GCACACACAGTGTGGAG-CACTGGGCCTCTGAGT-GGTAGCTGGATGCAG  946

seq1  TAAACAGATC-TTACCTCA  966
       ||||||||| ||||||||
seq2  AAAACAGATCTTTACCTCA  965

seq1: chr10_124897625_124898771
seq2: B6Ng01-145A16.g_67_1199 (reverse)

seq1  ACTATGCCTGTGCCTAGCAAACACAGAAGTGGATGGATTACAGGGCCCCC  50
      |||||||||| ||||||||||  ||| ||||||  |||||||||| ||||
seq2  ACTATGCCTG-GCCTAGCAAAACCAG-AGTGGAATGATTACAGGG-CCCC  47

seq1  AATGGAGGAGCTAGAGAAAATATCCAAGGAGCTAAAAGGATCTGCAACCC  100
      ||| |||  ||||||  ||||||||||| |||   |||||| |   ||||
seq2  AAT-GAGAGGCTAGAAGAAATATCCAAGAAGC--GAAGGAT-TCTCACCC  93

seq1  TATAGTTGGACCAACATTATGAACTAACCAGTACCCCGGAACTCTTGACA  150
      ||||| |||||| |||||||||||||||||||| |||||||||| |||||
seq2  TATAG-TGGACC-ACATTATGAACTAACCAGTATCCCGGAACTC-TGACA  140

seq1  CTAGCTGCATATGTATCAAAAGATGGCCTAGTCATCCATCACTGGAAAGA  200
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  CTAGCTGCATATGTTTCAAAAGATGGCCTAGTCAT-CATCACTGGAAAGA  189

seq1  GAAGCCCATTGGACTTGTAAACTTTATATGCCCCAGTACAAGGGAATGTC  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAG-CCATTGGACTTGTAAACTTTATATGCCCCAGTACAAGGGAATGTC  238

seq1  AGGGCCAAAAAGTGGCAGTGGGTGGGTAGAGGAGTGGTGGGGAGGGTATG  300
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGGCC-AAAAGT-GCAGTGGGTGGGTAGAGGAGTGGTGGGGAGGGTATG  286

seq1  GGGGACTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAGTA  336

seq1  AAAAAAAAAGAAAAAAATTTTTTTTTAAAATTAATAAATAAAAAGACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGAAAAAAATTTTTTTTTAAAATTAATAAATAAAAAGACTAG  386

seq1  TTGAGTGCAAAAGGGTGGGGACTGTATTGCTATGGAAAGTAAAAACCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGCAAAAGGGTGGGGACTGTATTGCTATGGAAAGTAAAAACCATC  436

seq1  CATTGGGAAACTAATAAAGAAACATTTATAAATCTTAGATAATAGCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGAAACTAATAAAGAAACATTTATAAATCTTAGATAATAGCCATA  486

seq1  GTATTTTTAAGAAGAGATGAATGGATGATAAAGCTGGTTTAAAGACTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTAAGAAGAGATGAATGGATGATAAAGCTGGTTTAAAGACTGGG  536

seq1  CAAATTTAGCGGTTGTTCTCTTGAAGATAAGGTTGATGGATACAAAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTAGCGGTTGTTCTCTTGAAGATAAGGTTGATGGATACAAAGGGC  586

seq1  CAACAGCATAGAGCATCAAACTAGAGGAAGGAGGAGGAGGAGAAGATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCATAGAGCATCAAACTAGAGGAAGGAGGAGGAGGAGAAGATGTA  636

seq1  ACCTTGTCATCAGGAGGCAGCCAGAGCAGAACGCTACAGAACAGCAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTCATCAGGAGGCAGCCAGAGCAGAACGCTACAGAACAGCAACCA  686

seq1  AGCAGTAGTACTTAACTTGTTTATAAGGAAACGACCTTTATATCTTCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAGTACTTAACTTGTTTATAAGGAAACGACCTTTATATCTTCATC  736

seq1  TCCAGAAAGGTGACACAGCCGTGACTGAAAAAGACATCTGAAATTTACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAAGGTGACACAGCCGTGACTGAAAAAGACATCTGAAATTTACCA  786

seq1  AATATCCTTTCATGAGTATTACCTTACCATTCTGCAACTTTAGCCACTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCTTTCATGAGTATTACCTTACCATTCTGCAACTTTAGCCACTAT  836

seq1  CCATCACCAAATTCACTTGACCCGTTCCACTCTATCATACAATTTCTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACCAAATTCACTTGACCCGTTCCACTCTATCATACAATTTCTGGG  886

seq1  CAATATATGCCAAAAGTCCACATACATTTATCTTACAACCCCACCCACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATGCCAAAAGTCCACATACATTTATCTTACAACCCCACCCACAG  936

seq1  GAGTTCACCCTCAGGCAGGATTCCAACAATGCAAATAGCATGATGCCAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCACCCTCAGGCAGGATTCCAACAATGCAAATAGCATGATGCCAAC  986

seq1  AGCCATTGATTTTTCACATCATTTGTAATCACAAAATACTAGAAAAAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTGATTTTTCACATCATTTGTAATCACAAAATACTAGAAAAAAAA  1036

seq1  TCTAAATATACACACATAGATTAGGTAAGAGGAAATGGTGGCAGAGACTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATATACACACATAGATTAGGTAAGAGGAAATGGTGGCAGAGACTG  1086

seq1  GTAGAGAACAGAAATGGAGGTAGCAATTCATGAATGAATATGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAACAGAAATGGAGGTAGCAATTCATGAATGAATATGAATTC  1133