BAC Information

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BAC

Clone NameB6Ng01-146M24
Chromosome10 (Build37)
Map Location 106,137,973 - 106,251,045
singlet/doubletdoublet
Overlap genePpfia2
Upstream geneBC067068, Ccdc59, EG667758, EG639162, Olfr1556-ps1
Downstream gene8430416H19Rik, Lin7a, Myf5, Myf6, Ptprq, EG628870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146M24.bB6Ng01-146M24.g
ACCDH943857DH943858
length1,165538
definitionDH943857|Mus musculus domesticus DNA, BAC clone: B6Ng01-146M24, 5' end.DH943858|Mus musculus domesticus DNA, BAC clone: B6Ng01-146M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,137,973 - 106,139,135)(106,250,502 - 106,251,045)
sequence
gaattcaatgttcaatgtctggcttatcaacaaccttagttcatattttt
gtttcactaatcgtgttttgttgtattaaatgaagtacatataacaagtt
tattttactaaatagctgctataagaaatgactagagacagaggcaagcg
gatttctgagttcgaggccaacctggtctacaaagagagctccaggacag
ccagggctatacagagaaaccctgtctcgaaaaacaaaacaaaacaaaac
aaacaaaaaaacaaaaacataacaaacaaacaaacaaaaaagaaaacact
agagtaagaaggctttaataagagaaggttacttctcacagctttgacca
cacaaaagtcttaaatcaaagtatttatatagttgattctttttgagaga
tgggaagcggagtacactccagttttctctccttggttttggatggcgtt
ctcacctaacttcacactgcctttgccttgcatgtgtcaatccatcgcaa
ttgctctatcatcaataaagtcgtattgaattaggaaacactaaatgata
tcgatgtgatgatattcaaaggccatggtttcaaataagtccacattcac
aggtccagatggtttgggctgatgatatattttattgacacaacccaacc
caaaataaaaccaaatcattatattttaagtctcaattatccaataagtg
aaacaaataataatattagatataataataagtaataaataataaacaat
aacatgctaaaacatgacagataaaagaacatcaaatttgtaccttattt
aatacaaataataactttataaaaaaaaaggttttattctccttttaaac
tggatgtgtgggctttgctatagtatgccaagtgtaaataaggattatga
tttctgagctctgaaatactaaagccaatctatctaaggccaatcaaaag
gttctttctcttctttacagtagttccctagcaaggaaatatataggtat
cataaatttaaaaacataattttctctacttatataattcataagaaaaa
taaaaattcagataagaatacttgaacatggtggagagcttattttccct
ctattctgatatattgctgtgttagcacttgccacccttttgccatgtac
actgtcctgacgtcc
tttgtttagctctgtacaccatttttaatggagttatttgaatttctgga
gtccagcttcttgagttctttgtatatattggatattagtcccctatcag
atttaggattggttaaaatccttatgtgtattgtaaatgaataaagttgc
tttttaaaaacacttttcaaatctgtaaaatgattcaaacctacttttat
aatgggaaaattctatttaaaatcacggaatccttaatacctttggcatg
ctaagacttacataattgtctttgttccatatcactgtgataaaacactc
tgatacaaagaaacttgggaaggaacgggtttgtatcatcttgaacttcc
aggttatattcaataatcaagagaagtcaaggcagaaactcaagtaaggc
agaaacatggagtgagaaattcaagcagaaaccatggagaaatgctccaa
atggcttgttatgactgtcttctaagcttcctagaacttccaggcttaag
gtagcactgcagtgtgtgtgtgtgtgtgtgtggtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_106137973_106139135
seq2: B6Ng01-146M24.b_48_1212

seq1  GAATTCAATGTTCAATGTCTGGCTTATCAACAACCTTAGTTCATATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTTCAATGTCTGGCTTATCAACAACCTTAGTTCATATTTTT  50

seq1  GTTTCACTAATCGTGTTTTGTTGTATTAAATGAAGTACATATAACAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACTAATCGTGTTTTGTTGTATTAAATGAAGTACATATAACAAGTT  100

seq1  TATTTTACTAAATAGCTGCTATAAGAAATGACTAGAGACAGAGGCAAGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACTAAATAGCTGCTATAAGAAATGACTAGAGACAGAGGCAAGCG  150

seq1  GATTTCTGAGTTCGAGGCCAACCTGGTCTACAAAGAGAGCTCCAGGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAGTTCGAGGCCAACCTGGTCTACAAAGAGAGCTCCAGGACAG  200

seq1  CCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAAAACAAAACAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAAAACAAAACAAAAC  250

seq1  AAACAAAAAAACAAAAACATAACAAACAAACAAACAAAAAAGAAAACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAAACAAAAACATAACAAACAAACAAACAAAAAAGAAAACACT  300

seq1  AGAGTAAGAAGGCTTTAATAAGAGAAGGTTACTTCTCACAGCTTTGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGAAGGCTTTAATAAGAGAAGGTTACTTCTCACAGCTTTGACCA  350

seq1  CACAAAAGTCTTAAATCAAAGTATTTATATAGTTGATTCTTTTTGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGTCTTAAATCAAAGTATTTATATAGTTGATTCTTTTTGAGAGA  400

seq1  TGGGAAGCGGAGTACACTCCAGTTTTCTCTCCTTGGTTTTGGATGGCGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGCGGAGTACACTCCAGTTTTCTCTCCTTGGTTTTGGATGGCGTT  450

seq1  CTCACCTAACTTCACACTGCCTTTGCCTTGCATGTGTCAATCCATCGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTAACTTCACACTGCCTTTGCCTTGCATGTGTCAATCCATCGCAA  500

seq1  TTGCTCTATCATCAATAAAGTCGTATTGAATTAGGAAACACTAAATGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTATCATCAATAAAGTCGTATTGAATTAGGAAACACTAAATGATA  550

seq1  TCGATGTGATGATATTCAAAGGCCATGGTTTCAAATAAGTCCACATTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATGTGATGATATTCAAAGGCCATGGTTTCAAATAAGTCCACATTCAC  600

seq1  AGGTCCAGATGGTTTGGGCTGATGATATATTTTATTGACACAACCCAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAGATGGTTTGGGCTGATGATATATTTTATTGACACAACCCAACC  650

seq1  CAAAATAAAACCAAATCATTATATTTTAAGTCTCAATTATCCAATAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAAACCAAATCATTATATTTTAAGTCTCAATTATCCAATAAGTG  700

seq1  AAACAAATAATAATATTAGATATAATAATAAGTAATAAATAATAAACAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATAATAATATTAGATATAATAATAAGTAATAAATAATAAACAAT  750

seq1  AACATGCT-AAACATGACAGATAAAAGAACATCAAATTTGTACCTTATTT  799
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCTAAAACATGACAGATAAAAGAACATCAAATTTGTACCTTATTT  800

seq1  AATACAAATAATAACTTTATAAAAAAAA--GGTTTATTCTCCTTTTAAAC  847
      ||||||||||||||||||||||||||||  | ||||||||||||||||||
seq2  AATACAAATAATAACTTTATAAAAAAAAAGGTTTTATTCTCCTTTTAAAC  850

seq1  TGGATGTGTGG--CTTGCTATAGTATGCCAAGTGTAAATAAGGATTATGA  895
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  TGGATGTGTGGGCTTTGCTATAGTATGCCAAGTGTAAATAAGGATTATGA  900

seq1  -TTCTGAGCTCTGAAATACTAAAGCCAATCTATCTAAGGCCAATCAAAAG  944
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGCTCTGAAATACTAAAGCCAATCTATCTAAGGCCAATCAAAAG  950

seq1  GTTCTTTCTCTTCTTTAACAGTAGTTCCCTAGCCAGGAAATATATAGGTA  994
      |||||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  GTTCTTTCTCTTCTTT-ACAGTAGTTCCCTAGCAAGGAAATATATAGGTA  999

seq1  TCATAAATTTAAAAACATAATTTTCTCTACTTATATTAATTCCATAG-AA  1043
      ||||||||||||||||||||||||||||||||||| ||||||   || ||
seq2  TCATAAATTTAAAAACATAATTTTCTCTACTTATA-TAATTCATAAGAAA  1048

seq1  AATAAAAATTCCAAGGAATAAG-ATACTTG-ACATGGT-GAGAGCTTAAT  1090
      |||||||||||  ||  ||||| ||||||| ||||||| |||||||||  
seq2  AATAAAAATTC--AG--ATAAGAATACTTGAACATGGTGGAGAGCTTA--  1092

seq1  TTTTCCCTCTATCCTGATATATTGCTGTGTTAGCCACTGCCACCCCTTTT  1140
      |||||||||||| |||||||||||||||||||||   |||||||| ||| 
seq2  TTTTCCCTCTATTCTGATATATTGCTGTGTTAGCACTTGCCACCCTTTTG  1142

seq1  CCCTGT-CACTGTCCTGACTGTCC  1163
      || ||| |||||||||||| ||||
seq2  CCATGTACACTGTCCTGAC-GTCC  1165

seq1: chr10_106250502_106251045
seq2: B6Ng01-146M24.g_70_613 (reverse)

seq1  ACACACCACACACACACACACACACACTGCAGTGCTACCTTAAGCCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCACACACACACACACACACACTGCAGTGCTACCTTAAGCCTGGA  50

seq1  AGTTCTAGGAAGCTTAGAAGACAGTCATAACAAGCCATTTGGAGCATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAGGAAGCTTAGAAGACAGTCATAACAAGCCATTTGGAGCATTTC  100

seq1  TCCATGGTTTCTGCTTGAATTTCTCACTCCATGTTTCTGCCTTACTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGTTTCTGCTTGAATTTCTCACTCCATGTTTCTGCCTTACTTGAG  150

seq1  TTTCTGCCTTGACTTCTCTTGATTATTGAATATAACCTGGAAGTTCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCCTTGACTTCTCTTGATTATTGAATATAACCTGGAAGTTCAAGA  200

seq1  TGATACAAACCCGTTCCTTCCCAAGTTTCTTTGTATCAGAGTGTTTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAAACCCGTTCCTTCCCAAGTTTCTTTGTATCAGAGTGTTTTATC  250

seq1  ACAGTGATATGGAACAAAGACAATTATGTAAGTCTTAGCATGCCAAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGATATGGAACAAAGACAATTATGTAAGTCTTAGCATGCCAAAGGT  300

seq1  ATTAAGGATTCCGTGATTTTAAATAGAATTTTCCCATTATAAAAGTAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGATTCCGTGATTTTAAATAGAATTTTCCCATTATAAAAGTAGGT  350

seq1  TTGAATCATTTTACAGATTTGAAAAGTGTTTTTAAAAAGCAACTTTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCATTTTACAGATTTGAAAAGTGTTTTTAAAAAGCAACTTTATTC  400

seq1  ATTTACAATACACATAAGGATTTTAACCAATCCTAAATCTGATAGGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAATACACATAAGGATTTTAACCAATCCTAAATCTGATAGGGGAC  450

seq1  TAATATCCAATATATACAAAGAACTCAAGAAGCTGGACTCCAGAAATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCCAATATATACAAAGAACTCAAGAAGCTGGACTCCAGAAATTCA  500

seq1  AATAACTCCATTAAAAATGGTGTACAGAGCTAAACAAAGAATTC  544
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTCCATTAAAAATGGTGTACAGAGCTAAACAAAGAATTC  544