BAC Information

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BAC

Clone NameB6Ng01-149O04
Chromosome10 (Build37)
Map Location 104,494,342 - 104,588,336
singlet/doubletdoublet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292, LOC100042383
Downstream geneTmtc2, EG627573, BC067068, Ccdc59, EG667758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149O04.bB6Ng01-149O04.g
ACCDH946102DH946103
length1,169338
definitionDH946102|Mus musculus domesticus DNA, BAC clone: B6Ng01-149O04, 5' end.DH946103|Mus musculus domesticus DNA, BAC clone: B6Ng01-149O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,587,147 - 104,588,336)(104,494,342 - 104,494,679)
sequence
gaattcctaatataaatgctttataaaagctatacagtattaactaggct
aatattaattaacattccatttacttttcttaaacatttttaaattattg
gaggtaatatttacccacatatggatatgtttattttaataagcacaaat
ttaggtacataaaacatatagaaataggatctttgggtcaaagctctgtg
catttcagatcagttaaagaagcccagatatttaattatgtcattttaca
cagagactattattttccaagacccctactttccatgaaactgaggatct
taaaaataacacactatggatgctcatctatattttctacctcatgtaat
ctaacataaatctgaaaaaagaaagcatttcataactttttagatttctc
tatgagttgtttttcagagatcagatgatactgtatgaaaatatctataa
tttttttagtgccccatggcatatgtttattcaagttagagtggaataag
gtgtagaatacagaagaaaatctcagacctgattcattgagaattttact
aatctacatagaaatttaatacatcgtcaccaacttctttaaattctcac
aaactaaaagaatgcttctcaccttcttcccagtgatcacattcatggga
aatatcataccataagtggtgctattctcctaaaaaacacattcgattta
agtttttatttgcattggtttcactgtgtaaggtgttactgtcagaaaca
gtattggctttctgtaaagcagccatcaaatgctgaacacttcaagaagt
ttgtatctaagcacttgtattctgcatctcactgagtcataaataaggaa
aaaactcaaaatatttaaattcacattatagattctgactaatttataaa
aagaattgggacttttttcccattttttgaacataactcttcagtttagc
ttttatggggtaggcaagctatgagaattatttacagagcattttattag
ctctctatacttatgtatcagcatattaatgtacccagtcactagtaata
ctactcaatatattactgagcggagtactctgatgaaaaatatcagtgat
atactgcttgtatttgagagtttattcaaatgtgcatgttgaaacatgac
atcaacatttctgggagtt
catcattgtagaaaagtccagtatgacaggaggtagggaggccatggaac
aggaaggagtaggcaccgggctagttatgctcacccacatttataaagca
gaaaatatgtgtggttacaaagcctcacacattcttaccaaacaatggaa
ccagctgaggattaagcgttcaaacacgtgagcttatctttgcagatcat
tttatattcaaaccaaaataaatagtgtattttggctctgttattaaagc
ttgctttttgtattaatcagaggtctcctgaaaattaaaaccaatagcat
tgctcaggagagaaaagggagggatggagggggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104587147_104588336
seq2: B6Ng01-149O04.b_45_1213 (reverse)

seq1  AACTCCCAGAAAATGTTGATGTCATGGTTTCTATCCATGCCAACATTTGA  50
      ||||||||| ||||||||||||||| ||||| |  |||||  ||||||||
seq2  AACTCCCAG-AAATGTTGATGTCAT-GTTTCAA--CATGC--ACATTTGA  44

seq1  ATATAAACTCTTCAAATACAAGCAGTATATCACTGATAATTTTTTCATCA  100
        |||||||| |||||||||||||||||||||||||||  ||||||||||
seq2  --ATAAACTC-TCAAATACAAGCAGTATATCACTGATA--TTTTTCATCA  89

seq1  GAAGTACTCCGCTCAGTTAAATATATTGAGTAGTTATTACTTAGTGACTG  150
      | |||||||||||||||  |||||||||||||| |||||| |||||||||
seq2  G-AGTACTCCGCTCAGT--AATATATTGAGTAG-TATTAC-TAGTGACTG  134

seq1  GGTACATTAATATGCTTGAATACATAAAAGTATAGAGAGCTAATAAAATG  200
      ||||||||||||||||   ||||||  |||||||||||||||||||||||
seq2  GGTACATTAATATGCT--GATACAT--AAGTATAGAGAGCTAATAAAATG  180

seq1  CCTCTGTAAATAATTCTCATAGCTTGCCTACCCCATAAAAGCTAAACTGA  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTCTGTAAATAATTCTCATAGCTTGCCTACCCCATAAAAGCTAAACTGA  229

seq1  AGAGTTATGTTCAAAAAATGGGAAAAAAGTCCCAATTCTTTTTATAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATGTTCAAAAAATGGGAAAAAAGTCCCAATTCTTTTTATAAATT  279

seq1  AGTCAGAATCTATAATGTGAATTTAAATATTTTGAGTTTTTTCCTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAATCTATAATGTGAATTTAAATATTTTGAGTTTTTTCCTTATTT  329

seq1  ATGACTCAGTGAGATGCAGAATACAAGTGCTTAGATACAAACTTCTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCAGTGAGATGCAGAATACAAGTGCTTAGATACAAACTTCTTGAA  379

seq1  GTGTTCAGCATTTGATGGCTGCTTTACAGAAAGCCAATACTGTTTCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGCATTTGATGGCTGCTTTACAGAAAGCCAATACTGTTTCTGAC  429

seq1  AGTAACACCTTACACAGTGAAACCAATGCAAATAAAAACTTAAATCGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACACCTTACACAGTGAAACCAATGCAAATAAAAACTTAAATCGAAT  479

seq1  GTGTTTTTTAGGAGAATAGCACCACTTATGGTATGATATTTCCCATGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTTAGGAGAATAGCACCACTTATGGTATGATATTTCCCATGAAT  529

seq1  GTGATCACTGGGAAGAAGGTGAGAAGCATTCTTTTAGTTTGTGAGAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCACTGGGAAGAAGGTGAGAAGCATTCTTTTAGTTTGTGAGAATTT  579

seq1  AAAGAAGTTGGTGACGATGTATTAAATTTCTATGTAGATTAGTAAAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTTGGTGACGATGTATTAAATTTCTATGTAGATTAGTAAAATTC  629

seq1  TCAATGAATCAGGTCTGAGATTTTCTTCTGTATTCTACACCTTATTCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAATCAGGTCTGAGATTTTCTTCTGTATTCTACACCTTATTCCAC  679

seq1  TCTAACTTGAATAAACATATGCCATGGGGCACTAAAAAAATTATAGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTGAATAAACATATGCCATGGGGCACTAAAAAAATTATAGATAT  729

seq1  TTTCATACAGTATCATCTGATCTCTGAAAAACAACTCATAGAGAAATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATACAGTATCATCTGATCTCTGAAAAACAACTCATAGAGAAATCTA  779

seq1  AAAAGTTATGAAATGCTTTCTTTTTTCAGATTTATGTTAGATTACATGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTATGAAATGCTTTCTTTTTTCAGATTTATGTTAGATTACATGAG  829

seq1  GTAGAAAATATAGATGAGCATCCATAGTGTGTTATTTTTAAGATCCTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAATATAGATGAGCATCCATAGTGTGTTATTTTTAAGATCCTCAG  879

seq1  TTTCATGGAAAGTAGGGGTCTTGGAAAATAATAGTCTCTGTGTAAAATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGAAAGTAGGGGTCTTGGAAAATAATAGTCTCTGTGTAAAATGA  929

seq1  CATAATTAAATATCTGGGCTTCTTTAACTGATCTGAAATGCACAGAGCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTAAATATCTGGGCTTCTTTAACTGATCTGAAATGCACAGAGCTT  979

seq1  TGACCCAAAGATCCTATTTCTATATGTTTTATGTACCTAAATTTGTGCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCAAAGATCCTATTTCTATATGTTTTATGTACCTAAATTTGTGCTT  1029

seq1  ATTAAAATAAACATATCCATATGTGGGTAAATATTACCTCCAATAATTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATAAACATATCCATATGTGGGTAAATATTACCTCCAATAATTTA  1079

seq1  AAAATGTTTAAGAAAAGTAAATGGAATGTTAATTAATATTAGCCTAGTTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTAAGAAAAGTAAATGGAATGTTAATTAATATTAGCCTAGTTA  1129

seq1  ATACTGTATAGCTTTTATAAAGCATTTATATTAGGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTATAGCTTTTATAAAGCATTTATATTAGGAATTC  1169

seq1: chr10_104494342_104494679
seq2: B6Ng01-149O04.g_72_409

seq1  CATCATTGTAGAAAAGTCCAGTATGACAGGAGGTAGGGAGGCCATGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTGTAGAAAAGTCCAGTATGACAGGAGGTAGGGAGGCCATGGAAC  50

seq1  AGGAAGGAGTAGGCACCGGGCTAGTTATGCTCACCCACATTTATAAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAGTAGGCACCGGGCTAGTTATGCTCACCCACATTTATAAAGCA  100

seq1  GAAAATATGTGTGGTTACAAAGCCTCACACATTCTTACCAAACAATGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATGTGTGGTTACAAAGCCTCACACATTCTTACCAAACAATGGAA  150

seq1  CCAGCTGAGGATTAAGCGTTCAAACACGTGAGCTTATCTTTGCAGATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGAGGATTAAGCGTTCAAACACGTGAGCTTATCTTTGCAGATCAT  200

seq1  TTTATATTCAAACCAAAATAAATAGTGTATTTTGGCTCTGTTATTAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTCAAACCAAAATAAATAGTGTATTTTGGCTCTGTTATTAAAGC  250

seq1  TTGCTTTTTGTATTAATCAGAGGTCTCCTGAAAATTAAAACCAATAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTTGTATTAATCAGAGGTCTCCTGAAAATTAAAACCAATAGCAT  300

seq1  TGCTCAGGAGAGAAAAGGGAGGGATGGAGGGGGGGAGG  338
      ||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGGAGAGAAAAGGGAGGGATGGAGGGGGGGAGG  338