BAC Information

Click to search

BAC

Clone NameB6Ng01-156J02
Chromosome10 (Build37)
Map Location 114,701,240 - 114,825,147
singlet/doubletdoublet
Overlap geneLOC668041, Rab21, Tmem19, Thap2, Ccdc131
Upstream geneTrhde, 4930473D10Rik, Tph2, Tbc1d15
Downstream geneLgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik, Ptprb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156J02.bB6Ng01-156J02.g
ACCDH951038DH951039
length571861
definitionDH951038|Mus musculus domesticus DNA, BAC clone: B6Ng01-156J02, 5' end.DH951039|Mus musculus domesticus DNA, BAC clone: B6Ng01-156J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,701,240 - 114,701,816)(114,824,285 - 114,825,147)
sequence
tattgctactttaaacaatttatattatttgaaatttcaagacaattggt
attacttcctccaatacaattggtattatttccagcaagaacccttgcta
gaaagttcttctgtgtattatactgataccatagttcttgttggtagtgg
agggtagccaaaagaagtactagataaacttgggtgactccttactacaa
gtataactatatgcaagtgatttactttcatgacatttgaattgaagata
tgagccagtaggccaccagtaccattaagaagtccaattaggcagttgcc
attaagaagtcccaaccagaagccttaatgaatccctgggaaccaggcgt
gttgtgtgctcgctcctgtgtgtagtgggttggcctaatgctatatgtat
tctaatgctaatttggggaccccaagactggttatcccccaaaactagag
agatggcatgtaagacaccgggtgaccctgtccccagttaactatgattg
gtaaataaagataccaatagctaatagctgggtaaaaaagacataggtgg
ggttgaggttatgtggggttg
gaattccaaagtagctactatgtgaacccatgatccaaacaacaataaaa
agaactgacacagattcttgtctattctgttttctttgaagctgcaaata
acgtatcctatttaagttaacaatagacaaaaattatactcaagatgttt
catttctaaatcagttaagtgagtcagaattacactcattcttttctaag
caatatctgtaaagtagtcatttatataaccacagtagacatatgaatta
agctaagtatgatacagatattaaaaaaaaaatgtggccaggcagtggtg
gcgcacgcctttaatcccagcactcgggaggcagaggcaggtggatttct
gagttcgaggccagcctggtctacagagtgagttccaggacagccagggc
tacacagagaaaccctgtctcaggaagaaaaaaaaaaaaaaaaagtggat
aaaaatttgtatccaagttttatttgctcacattatacagagccgatcac
tacacctagggtggtttactggtatttcctgagaacaataatacagaaaa
tcaaaccaagcatcttgttcttaaacaatcagcaagccagctgatgtgtg
agaagctgtcagggcaatcaaaatcacatttgcacactgtatatttacgt
acactccttttgcagtaagtacataaaagttcgtatatggcataatcccc
aaatagaagtacatgaacagaagaaaggtgaaagcaggaggtaacaggaa
ttataaccacaactttctaaagcagaggagattgagacaacctttgaatt
gccacagttgaattgccaaagggtcctcgggatgatgggttggttttttg
tttgtttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_114701240_114701816
seq2: B6Ng01-156J02.b_50_626

seq1  GAATTCTATTGCTACTTTAAACAATTTATATTATTTGAAATTTCAAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGCTACTTTAAACAATTTATATTATTTGAAATTTCAAGACA  50

seq1  ATTGGTATTACTTCCTCCAATACAATTGGTATTATTTCCAGCAAGAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTATTACTTCCTCCAATACAATTGGTATTATTTCCAGCAAGAACCC  100

seq1  TTGCTAGAAAGTTCTTCTGTGTATTATACTGATACCATAGTTCTTGTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGAAAGTTCTTCTGTGTATTATACTGATACCATAGTTCTTGTTGG  150

seq1  TAGTGGAGGGTAGCCAAAAGAAGTACTAGATAAACTTGGGTGACTCCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAGGGTAGCCAAAAGAAGTACTAGATAAACTTGGGTGACTCCTTA  200

seq1  CTACAAGTATAACTATATGCAAGTGATTTACTTTCATGACATTTGAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGTATAACTATATGCAAGTGATTTACTTTCATGACATTTGAATTG  250

seq1  AAGATATGAGCCAGTAGGCCACCAGTACCATTAAGAAGTCCAATTAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATGAGCCAGTAGGCCACCAGTACCATTAAGAAGTCCAATTAGGCA  300

seq1  GTTGCCATTAAGAAGTCCCAACCAGAAGCCTTAATGAATCCCTGGGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCATTAAGAAGTCCCAACCAGAAGCCTTAATGAATCCCTGGGAACC  350

seq1  AGGCGTGTTGTGTGCTCGCTCCTGTGTGTAGTGGGTTGGCCTAATGCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTGTTGTGTGCTCGCTCCTGTGTGTAGTGGGTTGGCCTAATGCTAT  400

seq1  ATGTATTCTAATGCTAATTTGGGGACCCCAAGACTGGTTATCCCCCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTCTAATGCTAATTTGGGGACCCCAAGACTGGTTATCCCCCAAAA  450

seq1  CTAGAGAGATGGCATGTAAGACACCGGGTGACCCTGTCCCCAGTTAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAGATGGCATGTAAGACACCGGGTGACCCTGTCCCCAGTTAACTA  500

seq1  TGATTGGTAAATAAAGATACCAATAGCTAATAGCTGGGTAAAAAAGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGTAAATAAAGATACCAATAGCTAATAGCTGGGTAAAAAAGACAT  550

seq1  AGGTGGGGTTGAGGTTATGTGGGGTTG  577
      |||||||||||||||||||||||||||
seq2  AGGTGGGGTTGAGGTTATGTGGGGTTG  577

seq1: chr10_114824285_114825147
seq2: B6Ng01-156J02.g_64_924 (reverse)

seq1  AAACAAAACAAAACAAAAAACCAAACCATCATCCCGAGGACCCTTTGGCA  50
      |||||||   |||||||||||||| |||||||||||||||||||||||||
seq2  AAACAAA--CAAACAAAAAACCAACCCATCATCCCGAGGACCCTTTGGCA  48

seq1  ATTCAACTGTGGCAATTCAAAGGTTGTCTCAATCTCCTCTGCTTTAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACTGTGGCAATTCAAAGGTTGTCTCAATCTCCTCTGCTTTAGAAA  98

seq1  GTTGTGGTTATAATTCCTGTTACCTCCTGCTTTCACCTTTCTTCTGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGTTATAATTCCTGTTACCTCCTGCTTTCACCTTTCTTCTGTTCA  148

seq1  TGTACTTCTATTTGGGGATTATGCCATATACGAACTTTTATGTACTTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCTATTTGGGGATTATGCCATATACGAACTTTTATGTACTTACT  198

seq1  GCAAAAGGAGTGTACGTAAATATACAGTGTGCAAATGTGATTTTGATTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGAGTGTACGTAAATATACAGTGTGCAAATGTGATTTTGATTGC  248

seq1  CCTGACAGCTTCTCACACATCAGCTGGCTTGCTGATTGTTTAAGAACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAGCTTCTCACACATCAGCTGGCTTGCTGATTGTTTAAGAACAAG  298

seq1  ATGCTTGGTTTGATTTTCTGTATTATTGTTCTCAGGAAATACCAGTAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGGTTTGATTTTCTGTATTATTGTTCTCAGGAAATACCAGTAAAC  348

seq1  CACCCTAGGTGTAGTGATCGGCTCTGTATAATGTGAGCAAATAAAACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTAGGTGTAGTGATCGGCTCTGTATAATGTGAGCAAATAAAACTTG  398

seq1  GATACAAATTTTTATCCACTTTTTTTTTTTTTTTTTCTTCCTGAGACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAATTTTTATCCACTTTTTTTTTTTTTTTTTCTTCCTGAGACAGG  448

seq1  GTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGC  498

seq1  TGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGAT  548

seq1  TAAAGGCGTGCGCCACCACTGCCTGGCCACATTTTTTTTTTAATATCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCGTGCGCCACCACTGCCTGGCCACATTTTTTTTTTAATATCTGT  598

seq1  ATCATACTTAGCTTAATTCATATGTCTACTGTGGTTATATAAATGACTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACTTAGCTTAATTCATATGTCTACTGTGGTTATATAAATGACTAC  648

seq1  TTTACAGATATTGCTTAGAAAAGAATGAGTGTAATTCTGACTCACTTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGATATTGCTTAGAAAAGAATGAGTGTAATTCTGACTCACTTAAC  698

seq1  TGATTTAGAAATGAAACATCTTGAGTATAATTTTTGTCTATTGTTAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAGAAATGAAACATCTTGAGTATAATTTTTGTCTATTGTTAACTT  748

seq1  AAATAGGATACGTTATTTGCAGCTTCAAAGAAAACAGAATAGACAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGATACGTTATTTGCAGCTTCAAAGAAAACAGAATAGACAAGAAT  798

seq1  CTGTGTCAGTTCTTTTTATTGTTGTTTGGATCATGGGTTCACATAGTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCAGTTCTTTTTATTGTTGTTTGGATCATGGGTTCACATAGTAGC  848

seq1  TACTTTGGAATTC  863
      |||||||||||||
seq2  TACTTTGGAATTC  861