BAC Information

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BAC

Clone NameB6Ng01-159F21
Chromosome10 (Build37)3 (Build37)
Map Location 104,053,521 - 104,054,363118,529,698 - 118,530,761
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159F21.bB6Ng01-159F21.g
ACCDH953049DH953050
length9851,060
definitionDH953049|Mus musculus domesticus DNA, BAC clone: B6Ng01-159F21, 5' end.DH953050|Mus musculus domesticus DNA, BAC clone: B6Ng01-159F21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,521 - 104,054,363)(118,529,698 - 118,530,761)
sequence
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ctcagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatagatgctggtgaggatgtggagaaagaggaacatgcctccattgtt
agtgggattgcaagcttgtacaaccactctggaaatcagtctggcggttc
ctcagaaaaatggacatagtactaccagaggatccagcaatacctctcct
gggcatatatccagaagatgtcccaaccggtaagaaggacacatgctcca
ctatgttcatagcagccttatttttaatagccagaagctggaaagaaccc
agatgcccctcaacagaggaatggataccaaaaaatgtggtacatttaca
cagtggagtactactcagctagtaaaaaggatgaatttatgaaattccta
ggcaaatggatggacctggagggcatcatcctgagtgaggtaacacaatc
acaaaagaactcaaatgatatgtactcactgataagtggatattagccca
gaaacttagtatagtgagatataagatacaatttgcaaaacacatgaaac
tgaagaagaacaaagaccaaagtgtggacactttgccccttcttagaatt
ggaaacaatcacccatggaaggagttacagagacaaagtttggagctgag
acaaaaggatggaccatctagagactgccatatccaatgatccatcccat
aattagcctccaaacgatatatgtcttttttaatggtactttttcttaat
tttttaacaaaacatcacttctatgtgtatagtattaaatatgattccat
ttgtttcaatgttatcactagatctctaagcatttgttgagttcatttat
attgaaatttattagctgtgtatttatatcaaaaa
gaattcttagtgtatttctatacattcagcctactgcattcaaggtagag
gacaatgatcatttaaatacagactacttggtcactgatggcctctgctc
caccatgcatctttcattttcctctctttttaaaagccctttattaattt
tgagagtataatttattcacaacatttcatccttctctgtcctttgtcca
agcccttccttgttccattctcagctctctttcaaactcactgcattgca
catgtataaattgttattacaagtgtatatgtatgtataatcctatctat
aacctattcattctgctcaatgttactagcatatatgatttcaaagctgg
tgacttggcagtggatcttcaacgagtgtgttcttctctgggaaagaact
tctcccctctcttcatgattacaagataaatgaactaaagtctttgacga
gtttgttttggatattatcatttagcctggttagagagagaattatggtt
atcacatactgaagattattttgttcatttattcattcacttgtttttga
gacaagttttccctctgtagcctggggtggcttgaaactctccatgtagc
tcaggatggctttaaatcatggtaatccccttgtctcaggctctcaaaca
ctaggagtttaggcggatgccatcacatagcaaatatttctgaaatactg
ctctttttatgcaaggttctacatcaaacttgtgtagtctctttttgcaa
gactattaaaatgcctgtcaataacttgaccaacatgagaaaaaataata
tagctcaattattgtgaagtacacttactacattcaggaggcttttcttt
tgttgttgtgatgatggtgttgtgacaaaatgtgtctcctatttggatat
tatgtactatgaaatgcctaattgacattagtcgtcatgcctgatatcgt
tgccttaattctcctcggaacaactacatgccctttattggctcttgttc
aactgcacaaattaactccaggtacctccctatttatttcagtttaatac
taaagaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053521_104054363
seq2: B6Ng01-159F21.b_45_679 (reverse)

seq1  CAAATTGTATCTTATATCTTGGGTATCCTAAGTTTCTGGGCTAATATCCA  50
      |||||||||||||||||| |   ||| |||||||||||||||||||||||
seq2  CAAATTGTATCTTATATC-TCACTATACTAAGTTTCTGGGCTAATATCCA  49

seq1  CTTATCAGTGAGTACATATTGCGCGAGTTCCTTTGTGATTGGGTTACCGC  100
      |||||||||||||||||||     |||||| |||||||||| |||||| |
seq2  CTTATCAGTGAGTACATATCATTTGAGTTCTTTTGTGATTGTGTTACCTC  99

seq1  ACTCAGGATGATACTCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAA  150
      |||||||||||| | |||||||||||||||||||||||||||||||||||
seq2  ACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAA  149

seq1  ATTCATTCTTTTTAATAGCTCCATTTACATTTAATTTAATTAATGTAATT  200
      |||||| ||||||| ||||                               
seq2  ATTCATCCTTTTTACTAGC-------------------------------  168

seq1  ACAATTAATTAATTTATTAATTAAATAATTTAATAATTTAATTGATAAAT  250
                                                        
seq2  --------------------------------------------------  168

seq1  TAATTTAATTAATTAATTTAATTAATTAAATTAAATAATAATTTAATAAT  300
                                                        
seq2  --------------------------------------------------  168

seq1  AAATTAAATATTTTAAAATTAATAATAATTTTATAAGTAAATAATTTAAT  350
                                       | ||||           
seq2  ---------------------------------TGAGTA-----------  174

seq1  TAATGTAATTTAATTAATGTAATTACATTACATTTAATAGCTCCATTGTG  400
                        |||                   ||||| ||||
seq2  ------------------GTA-------------------CTCCACTGTG  187

seq1  TAAATGTACCACATTTTCT-GTATCTATTCCTCTGTTGAGGGGCATCTGG  449
      ||||||||||||||||| | ||||| ||||||||||||||||||||||||
seq2  TAAATGTACCACATTTTTTGGTATCCATTCCTCTGTTGAGGGGCATCTGG  237

seq1  GTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATATAGTG  499
      ||||||||||||| |||||||||| |||||||||||||||||| ||||||
seq2  GTTCTTTCCAGCTTCTGGCTATTAAAAATAAGGCTGCTATGAACATAGTG  287

seq1  GAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATGCCCAG  549
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGCATGTGTCCTTCTTACCGGTTGGGACATCTTCTGGATATATGCCCAG  337

seq1  AAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGACGA  599
       |||||||||||||||||||| |||||||||||||||| |||||||| ||
seq2  GAGAGGTATTGCTGGATCCTCTGGTAGTACTATGTCCATTTTTCTGAGGA  387

seq1  ACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAA  649
      |||||||||| |||||||||||||||||||||||| ||||||||||| ||
seq2  ACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACTAA  437

seq1  CAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGC----ATCTGC  695
      |||||||||  ||||||||||||||||||||||| |||||    ||||||
seq2  CAATGGAGGCATGTTCCTCTTTCTCCACATCCTCACCAGCATCTATCTGC  487

seq1  TGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAAT  745
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGATGGAAT  537

seq1  CTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACA  795
      |||||||||||||||||||||||||| |||||||||||||||| ||| ||
seq2  CTCAGGGTTGTTTTGATTTGCATTTCTCTGATGATTAAGGATGCTGAGCA  587

seq1  TTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  843
      |||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  TTTTTTCAGGTGCTTCTCAGCCATTCAGTATTCCTCAGGTGAGAATTC  635

seq1: chr3_118529698_118530761
seq2: B6Ng01-159F21.g_67_1126

seq1  GAATTCTTAGTGTATTTCTATACATTCAGCCTACTGCATTCAAGGTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTGTATTTCTATACATTCAGCCTACTGCATTCAAGGTAGAG  50

seq1  GACAATGATCATTTAAATACAGACTACTTGGTCACTGATGGCCTCTGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGATCATTTAAATACAGACTACTTGGTCACTGATGGCCTCTGCTC  100

seq1  CACCATGCATCTTTCATTTTCCTCTCTTTTTAAAAGCCCTTTATTAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGCATCTTTCATTTTCCTCTCTTTTTAAAAGCCCTTTATTAATTT  150

seq1  TGAGAGTATAATTTATTCACAACATTTCATCCTTCTCTGTCCTTTGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTATAATTTATTCACAACATTTCATCCTTCTCTGTCCTTTGTCCA  200

seq1  AGCCCTTCCTTGTTCCATTCTCAGCTCTCTTTCAAACTCACTGCATTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTCCTTGTTCCATTCTCAGCTCTCTTTCAAACTCACTGCATTGCA  250

seq1  CATGTATAAATTGTTATTACAAGTGTATATGTATGTATAATCCTATCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATAAATTGTTATTACAAGTGTATATGTATGTATAATCCTATCTAT  300

seq1  AACCTATTCATTCTGCTCAATGTTACTAGCATATATGATTTCAAAGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATTCATTCTGCTCAATGTTACTAGCATATATGATTTCAAAGCTGG  350

seq1  TGACTTGGCAGTGGATCTTCAACGAGTGTGTTCTTCTCTGGGAAAGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGGCAGTGGATCTTCAACGAGTGTGTTCTTCTCTGGGAAAGAACT  400

seq1  TCTCCCCTCTCTTCATGATTACAAGATAAATGAACTAAAGTCTTTGACGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTCTCTTCATGATTACAAGATAAATGAACTAAAGTCTTTGACGA  450

seq1  GTTTGTTTTGGATATTATCATTTAGCCTGGTTAGAGAGAGAATTATGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTGGATATTATCATTTAGCCTGGTTAGAGAGAGAATTATGGTT  500

seq1  ATCACATACTGAAGATTATTTTGTTCATTTATTCATTCACTTGTTTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATACTGAAGATTATTTTGTTCATTTATTCATTCACTTGTTTTTGA  550

seq1  GACAAGTTTTCCCTCTGTAGCCTGGGGTGGCTTGAAACTCTCCATGTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTTTTCCCTCTGTAGCCTGGGGTGGCTTGAAACTCTCCATGTAGC  600

seq1  TCAGGATGGCTTTAAATCATGGTAATCCCCTTGTCTCAGGCTCTCAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGGCTTTAAATCATGGTAATCCCCTTGTCTCAGGCTCTCAAACA  650

seq1  CTAGGAGTTTAGGCGGATGCCATCACATAGCAAATATTTCTGAAATACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGTTTAGGCGGATGCCATCACATAGCAAATATTTCTGAAATACTG  700

seq1  CTCTTTTTATGCAAGGTTCTACATCAAACTTGTGTAGTCTCTTTTTGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTATGCAAGGTTCTACATCAAACTTGTGTAGTCTCTTTTTGCAA  750

seq1  GACTATTAAAATGCCTGTCAATAACTTGACCAACATGAGAAAAAATAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTAAAATGCCTGTCAATAACTTGACCAACATGAGAAAAAATAATA  800

seq1  TAGCTCAATTATTGTGAAGTACACTTACTACATTCAGGAGGCTTTTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAATTATTGTGAAGTACACTTACTACATTCAGGAGGCTTTTCTTT  850

seq1  TGTTGTTGTGATGATGGTGTTGTGACAAAAATGTGTCTCCTATTTGGATA  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTTGTTGTGATGATGGTGTTGTGAC-AAAATGTGTCTCCTATTTGGATA  899

seq1  TTTATTGTACTATGAAATGCCTAATTGACATTAGTCGTCAATGCCTGATA  950
      ||   |||||||||||||||||||||||||||||||||| ||||||||||
seq2  TT--ATGTACTATGAAATGCCTAATTGACATTAGTCGTC-ATGCCTGATA  946

seq1  TCGTTGCCTATATTCTCTCAGTAACAACTACATGCCC-TTATTGGCTCTT  999
      |||||||||  ||||||   | ||||||||||||||| ||||||||||||
seq2  TCGTTGCCTTAATTCTCCTCGGAACAACTACATGCCCTTTATTGGCTCTT  996

seq1  GTTCAGACTGCAC-AATTAACTCCAGGTACTTCACTATTTATTTTAGTTT  1048
      ||||| ||||||| |||||||||||||||| || |||||||||| |||||
seq2  GTTCA-ACTGCACAAATTAACTCCAGGTACCTCCCTATTTATTTCAGTTT  1045

seq1  AAATACTAAAGAAATA  1064
       |||||||||||||||
seq2  -AATACTAAAGAAATA  1060