BAC Information

Click to search

BAC

Clone NameB6Ng01-160F08
Chromosome10 (Build37)16 (Build37)
Map Location 104,053,993 - 104,054,3635,304,657 - 5,305,780
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160F08.bB6Ng01-160F08.g
ACCDH953735DH953736
length1,0371,110
definitionDH953735|Mus musculus domesticus DNA, BAC clone: B6Ng01-160F08, 5' end.DH953736|Mus musculus domesticus DNA, BAC clone: B6Ng01-160F08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,993 - 104,054,363)(5,304,657 - 5,305,780)
sequence
gaattctcacccgaggaataccgaaaggctgaaaacacctgaaaaattgt
tcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagatt
ccatctcacaccagtcagaatggctaagatcaaaaatccaggtgacagca
gatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgg
gattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcag
aaaattggacatagtactaccggaggatccagcaatacctctcctgggca
tatatccagaaaatgtcccaaccggtaagaaggacacatgctccactatg
ttcatagcagccttatttatttatttatttatttatttttaagaaagatt
tctctttttttttttctttttaaagatttatttatttttatatgtgtgtg
tgcattgttgctgtcttcagacacaccagaagagggcatcagatcccgtt
atagatggttgtgagccaccatgtgattgctgggaattgaactcaggacc
tctgggagagcagtcagtgctcttaaccgctgagccatctctccagccag
cagccttatttataatagccagaagctggaaagaacccacatgcccctca
acagaggaatggatacaaaaaatatggtacatttacacaatggagtacta
ctcagctattaaaaagaatgaatttatgaaattcctaggcaaatggatgg
acctggagggcatcatcctgagtgaggtaacccaatcacaaaagaactca
aatgaaatgtactcactgataagtggatattagcccagaaacttagtata
gcgagatataaggtacaagatgcaaaacacatgaaactgaagaagaacga
agaccaaagtgtgacactttgctccttcttagaattggaaacatcaccca
tggaaggagttacagagacaaggtttgagctgagacaaagatggacattc
tagagactgcatatcagggatcatccatattagcctc
gaattcagagagcctcagatcggatggcatggcgcatgtaaagctgtcag
tggtggatggtgtcagggagcagtgtgtcaggaagcagtgtgtcagggag
cagtgtgtcagggagcagtgtgtcagggagcagtgtgtcagggagcagtg
tgaactctttttaattctttgcacagggacagaacctaacccttaggaaa
ctccatcaactgccagctactggtatttccaactgttagctgggctctta
ccaatcctgaaaaccatcaaaaccatcaagagctttcccctcagcctatc
tgaaaacctgagtggtgggaaaattttcttaatgcaagaaagaaaataga
tgagtcacatgaaatacttcaaatacatagcacgctgactaggagagcct
atccctccacttccctcttctccatcatttccaataaaccaaacattaaa
tattgggatatgtatacaagttggttcttgtcttttgggggtcatggaca
cccttataagtgtggatgcagggaactggggagctggctcattcagtaaa
gtgcttgttctataagcaagaggacctgacttcaatccccagcattccat
aaaagttgaatgcaggggtatatgtctgtaatgcctgaattggggaggca
gagacagagggattcctggggcttgctggccagccagcctaggcaaacca
gtaactgtcaggttcagtgagagaccttgtttcagacattaagatgggga
agaactgaagaagatactcaacactgaccatatgtatcatgtgtacccac
atatgcatgtacatacacacgcatacacacacacacacacgcacacacac
acacacacacacacacatcaagtatagaatcccagttcccttctagagag
tggagctttgcactataactgaaaccattgtgtattttgtcccatgccca
tgagaactcatgtcatctcttcacactattaactactgagacattctaga
aaagaagaacctatacctctggatggtgagtcctgaaagcctagaggttt
ttttttcccttgattaagtattccctgaacaacttcctggaagaagcctt
atattggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053993_104054363
seq2: B6Ng01-160F08.b_50_419 (reverse)

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCGGT  50

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  100
      |||| ||| |||||||||||||||||| ||||||||||||||||||||||
seq2  TGGGACATTTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCG  100

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  150
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  150

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  200

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  250
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  TCCACATCCACGCCAGCATCTGCTGTCACCTGGATTTTTGATCTTAGCCA  250

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  300
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  TTCTGACTGGTGTGAGATGGAATCTCAGGGTTGTTTTGATTTGCATTTCT  300

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  350
      ||||||||||||||||||||||| ||||||||||| || || ||| ||||
seq2  CTGATGATTAAGGATGTTGAACAATTTTTCAGGTG-TTTTCAGCCTTTCG  349

seq1  GTATTCCTCAGGTGAGAATTC  371
      ||||||||| |||||||||||
seq2  GTATTCCTCGGGTGAGAATTC  370

seq1: chr16_5304657_5305780
seq2: B6Ng01-160F08.g_68_1177

seq1  GAATTCAGAGAGCCTCAGATCGGATGGCATGGCGCATGTAAAGCTGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGCCTCAGATCGGATGGCATGGCGCATGTAAAGCTGTCAG  50

seq1  TGGTGGATGGTGTCAGGGAGCAGTGTGTCAGGAAGCAGTGTGTCAGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGATGGTGTCAGGGAGCAGTGTGTCAGGAAGCAGTGTGTCAGGGAG  100

seq1  CAGTGTGTCAGGGAGCAGTGTGTCAGGGAGCAGTGTGTCAGGGAGCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTCAGGGAGCAGTGTGTCAGGGAGCAGTGTGTCAGGGAGCAGTG  150

seq1  TGAACTCTTTTTAATTCTTTGCACAGGGACAGAACCTAACCCTTAGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTTTTTAATTCTTTGCACAGGGACAGAACCTAACCCTTAGGAAA  200

seq1  CTCCATCAACTGCCAGCTACTGGTATTTCCAACTGTTAGCTGGGCTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCAACTGCCAGCTACTGGTATTTCCAACTGTTAGCTGGGCTCTTA  250

seq1  CCAATCCTGAAAACCATCAAAACCATCAAGAGCTTTCCCCTCAGCCTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCTGAAAACCATCAAAACCATCAAGAGCTTTCCCCTCAGCCTATC  300

seq1  TGAAAACCTGAGTGGTGGGAAAATTTTCTTAATGCAAGAAAGAAAATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCTGAGTGGTGGGAAAATTTTCTTAATGCAAGAAAGAAAATAGA  350

seq1  TGAGTCACATGAAATACTTCAAATACATAGCACGCTGACTAGGAGAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCACATGAAATACTTCAAATACATAGCACGCTGACTAGGAGAGCCT  400

seq1  ATCCCTCCACTTCCCTCTTCTCCATCATTTCCAATAAACCAAACATTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCCACTTCCCTCTTCTCCATCATTTCCAATAAACCAAACATTAAA  450

seq1  TATTGGGATATGTATACAAGTTGGTTCTTGTCTTTTGGGGGTCATGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGATATGTATACAAGTTGGTTCTTGTCTTTTGGGGGTCATGGACA  500

seq1  CCCTTATAAGTGTGGATGCAGGGAACTGGGGAGCTGGCTCATTCAGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATAAGTGTGGATGCAGGGAACTGGGGAGCTGGCTCATTCAGTAAA  550

seq1  GTGCTTGTTCTATAAGCAAGAGGACCTGACTTCAATCCCCAGCATTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGTTCTATAAGCAAGAGGACCTGACTTCAATCCCCAGCATTCCAT  600

seq1  AAAAGTTGAATGCAGGGGTATATGTCTGTAATGCCTGAATTGGGGAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGAATGCAGGGGTATATGTCTGTAATGCCTGAATTGGGGAGGCA  650

seq1  GAGACAGAGGGATTCCTGGGGCTTGCTGGCCAGCCAGCCTAGGCAAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGGGATTCCTGGGGCTTGCTGGCCAGCCAGCCTAGGCAAACCA  700

seq1  GTAACTGTCAGGTTCAGTGAGAGACCTTGTTTCAGACATTAAGATGGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGTCAGGTTCAGTGAGAGACCTTGTTTCAGACATTAAGATGGGGA  750

seq1  AGAACTGAAGAAGATACTCAACACTGACCATATGTATCATGTGTACCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAAGAAGATACTCAACACTGACCATATGTATCATGTGTACCCAC  800

seq1  ATATGCATGTACATACACACGCATACACACACACACACACACACACACAC  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATATGCATGTACATACACACGCATACACACACACACACACGCACACACAC  850

seq1  ACACACACACACACACAATCAAGTATAGAATCCCAGTTCCCTCTCAGAGA  900
      |||||||||||||||| |||||||||||||||||||||||||   |||||
seq2  ACACACACACACACAC-ATCAAGTATAGAATCCCAGTTCCCTTCTAGAGA  899

seq1  GTGGAGCTTTGCACATATAACTGAAACCATTGTGTATTTTGTCCCATTGC  950
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  GTGGAGCTTTGCAC-TATAACTGAAACCATTGTGTATTTTGTCCCA-TGC  947

seq1  CCATGAGAACTCATGTTCATCTCTTTCACACTATGAACTACTGAGAACAT  1000
      ||||||||||||||| ||||||| |||||||||| |||||||||| ||||
seq2  CCATGAGAACTCATG-TCATCTC-TTCACACTATTAACTACTGAG-ACAT  994

seq1  TCTAGAAAAGATAGAACCTATACTCTTGAGATGGTGAGT-CTGAAGGCCT  1049
      ||||||||||| ||||||||||| ||   |||||||||| ||||| ||||
seq2  TCTAGAAAAGA-AGAACCTATAC-CTCTGGATGGTGAGTCCTGAAAGCCT  1042

seq1  AGAGGGTTTTTTTTTTTCCTTGTGATTAAGTATTTCCCTGAAGCAACTTT  1099
      |||||   ||||||||||| | |||||||||| ||||||||| |||||| 
seq2  AGAGG---TTTTTTTTTCCCT-TGATTAAGTA-TTCCCTGAA-CAACTTC  1086

seq1  CTGGAGGAGAGCCTTATTTTGGCTC  1124
      ||||| || |||||||| |||||||
seq2  CTGGAAGA-AGCCTTATATTGGCTC  1110