BAC Information

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BAC

Clone NameB6Ng01-161L10
Chromosome10 (Build37)
Map Location 51,897,334 - 52,013,594
singlet/doubletdoublet
Overlap geneRos1, Dcbld1
Upstream geneLOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2
Downstream geneGopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161L10.bB6Ng01-161L10.g
ACCDH954751DH954752
length1,066843
definitionDH954751|Mus musculus domesticus DNA, BAC clone: B6Ng01-161L10, 5' end.DH954752|Mus musculus domesticus DNA, BAC clone: B6Ng01-161L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,012,508 - 52,013,594)(51,897,334 - 51,898,247)
sequence
gaattcctggtactgttctctgacttccacactgcaaacaattacctgtt
tgcacaggaacacacaacacgcacagaacactcacaaaatgtattttaaa
gaaaagaaaagaaaagaaaggaaaagaaaagaaaagagaacaaagcttga
tattgtgttgtatgtctctgatcccagcaaccaggaaacagaaataagca
gatttggtctatagagagttccagatctgccaggtctaccatgtgagacc
ctgtctcccaatatataaacatataaatattaaaagaccactggggataa
cagatgaggttgcttcccccatggggcagggcacattgttatgcagctgc
taagtatctaacagataaggggaagatactaaccagacttctggtagaga
taaactttcaaaagccaacagtggccaggcatcatgacgctcccctttga
tcccagacttgggaagcagaggcagacaatctgtgagttcccgcaatccc
tcccaggagaacaataaaatcttcccactgacagggaagaaactccattt
caacctttgtcttctagttaatttcctggaatcattgaggaatagcttct
ctactttttttttttttaagaaagataggcatgataagtatcctgtgtcc
attttatttatgatagagctcccgatgagaggaaactaaacgcataatct
tgatgtgcttgaagaaaaaagaaaatgaaatgtgaagaaaagcctacaac
aagattactgtggagttgtctatcctgactaagcaggttttccctctcta
cagtgtatgtgagagagacaggtctcttatttatttcttaattattgact
tgttttgatagatattttctgcattactttgaaaagctatgcccgttcca
agtttcctctccaggagtcccctccccatattgttggcaactaggacaat
cctctgcgcaactgttaacttgagaatcgagctctcggggggtatggtat
tgtgctattgttttcctcctaattgggtgcagaccccttcgtttcttctt
ggacctgtgatccacc
gaattcaaatgttgtcttaagttttttgtttttgtttttgttttctgttc
tttagtgtaaggtcgggatgggatgatcctcctgcctctaccttctaagt
gcacataatacagatgtacgccaccgcacctggcctaacaggtctcattt
aatgtgatataatatgtatggcagagtactctgtggttggaaaaagatgc
ctcagtgatttaaggagattgtggcaaaattgacaagctgatttccaacc
caaaactcacgtggcagaaggggagcatggcccctgaaaattgtcctctg
atttccacacacatgcatgaacacatccacctatccaacataaacactta
ataaataaataaataaatacattttaaaaatgttataagaaaattctccc
agcagagatatcccagagtgcattctttcttccctgtcaggcccaccctc
ccctttgttcaacgctaaaaattataatctcctatattagattgaagata
ccgcttgtccttgtacttgggttataagtttctgtatataatgcaaaatt
ggccaactgagcagaaaaaacatttataattgtatcttagcctaactgtg
tggatatactaaaagtgtgcatgcccttcatttgtcttaattttataaaa
cagtccatcctaatatactaattgaactgaatatggaggcccctgcccct
tcacaccattggccgtagaggcaggaagcccgggaggacattgtttcctt
agctacagagagtgtgtgacgacagcctagtcttcttgagatatagtctc
tcaagtatggaagaaggaggagaggcttgaatattttcattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_52012508_52013594
seq2: B6Ng01-161L10.b_45_1110 (reverse)

seq1  GGTGGATCACAGGGCTCCCAATGAAGGAGCTGAAGGGGTCTGCAACCCTA  50
      |||||||||||||  |||  | |||| | | ||||||||||||| ||   
seq2  GGTGGATCACAGG--TCC--AAGAAGAAAC-GAAGGGGTCTGCACCCAAT  45

seq1  TAGGAGGAATAACAATATGAACTA-ACCAGTACCCCCC-AGAGCTTGTGT  98
      ||||||||| ||||||| | || | |||| |||||||| |||||| |  |
seq2  TAGGAGGAA-AACAATA-GCACAATACCA-TACCCCCCGAGAGCTCGATT  92

seq1  CTCTAGTTTGCATATGCGGCAGAGGA-TGGCCTAGTTGGCCATCAATGTG  147
      ||| ||||  ||  ||| |||||||| || ||||||| |||| |||| ||
seq2  CTCAAGTTAACAGTTGC-GCAGAGGATTGTCCTAGTT-GCCAACAATATG  140

seq1  GGGTGGGGGGACTTTTGGAGAGGAAACTGGGAAAGGGGATAGCATTTGAA  197
      ||  | |||||||  ||||||||||||| |||| ||| ||||| ||| ||
seq2  GG--GAGGGGACTCCTGGAGAGGAAACTTGGAACGGGCATAGCTTTTCAA  188

seq1  ATGTAAATGAAGAAAATATCTAATATAAATAAATAAATAAATAAATAAAT  247
      | || |||| ||||||||||||  |     ||| || | ||| ||| || 
seq2  A-GT-AATGCAGAAAATATCTATCA-----AAACAAGTCAAT-AATTAAG  230

seq1  AAATAAATAAGAGAACTGTCTCTCTCACATACACTGTAGAGATGGAAAAG  297
      |||||||||||||| ||||||||||||||||||||||||||| |||||| 
seq2  AAATAAATAAGAGACCTGTCTCTCTCACATACACTGTAGAGAGGGAAAAC  280

seq1  CTGCCTCTGGCAGGAGAGACAACTCCACTGTAATCTTGTTGTAGGCTGTT  347
      ||| ||  | ||||| |||||||||||| |||||||||||||||||| ||
seq2  CTG-CTTAGTCAGGATAGACAACTCCACAGTAATCTTGTTGTAGGCTTTT  329

seq1  CTTCACATTTTATTTTGTTTTTTTCTTCTAGCACATCCTGATTTTGCTTT  397
      |||||||||| |||||  |||||||||| ||||||||  |||| ||| ||
seq2  CTTCACATTTCATTTT-CTTTTTTCTTCAAGCACATCAAGATTATGCGTT  378

seq1  TTGTTTCCTCTTTTCTGTATTTCTTTCATTTATAAATTGGACACAGGATA  447
      | |||||||||  || | |  ||| ||||  ||||| |||||||||||||
seq2  TAGTTTCCTCTCATCGGGAGCTCTATCATAAATAAAATGGACACAGGATA  428

seq1  TTTATCTTGCCTATCTTTCTTTAAAAAAAAAAAAGTAGAGAAGCTATTCC  497
       ||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTATCATGCCTATCTTTCTTAAAAAAAAAAAAAGTAGAGAAGCTATTCC  478

seq1  TCAATGATTCCAGGAAATTAACTAGAAGACAAAGGTTGAAATGGAGTTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGATTCCAGGAAATTAACTAGAAGACAAAGGTTGAAATGGAGTTTC  528

seq1  TTCCCTGTCAGTGGGAAGATTTTATTGTTCTCCTGGGAGGGATTGCGGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTCAGTGGGAAGATTTTATTGTTCTCCTGGGAGGGATTGCGGGA  578

seq1  ACTCACAGATTGTCTGCCTCTGCTTCCCAAGTGCTGGGATTAAAGGGGAG  647
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  ACTCACAGATTGTCTGCCTCTGCTTCCCAAGT-CTGGGATCAAAGGGGAG  627

seq1  TGTCATGATGCCTGGCCACTGTTGGCTTTTGAAAGTTTATCTCTTTACAG  697
       |||||||||||||||||||||||||||||||||||||||||| |  |||
seq2  CGTCATGATGCCTGGCCACTGTTGGCTTTTGAAAGTTTATCTC-TACCAG  676

seq1  AAGTCTGGTTAGTATCTTCCCCTTATCTGTTAGATACTTAGCAGCTGCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGGTTAGTATCTTCCCCTTATCTGTTAGATACTTAGCAGCTGCAT  726

seq1  AACAATGTGCCCTGCCCCATGGCTGAAGCAACCTCATCTGTTATCCCCAG  797
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  AACAATGTGCCCTGCCCCATGGGGGAAGCAACCTCATCTGTTATCCCCAG  776

seq1  TTGTCTTTTTATATTTATATGTTTATATATTGGGAGACAGGGTCTCACCT  847
      | ||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  TGGTCTTTTAATATTTATATGTTTATATATTGGGAGACAGGGTCTCACAT  826

seq1  GGTAGACCTGGCAGATCTGGAACTCTCTATAGACCAAATCTGCTTATTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACCTGGCAGATCTGGAACTCTCTATAGACCAAATCTGCTTATTTC  876

seq1  TGTTTCCTGGTTGCTGGGATCAGAGACATACAACACAATATCAAGCTTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTTTCCTGGTTGCTGGGATCAGAGACATACAACACAATATCAAGCTTTG  926

seq1  TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTAAAATAC  997
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCTCTTTTCTTTTCTTTTCCTTTCTTTTCTTTTCTTTTCTTTAAAATAC  976

seq1  ATTTTGTGTGTGTTCTGTGTGTGTTGTGTGTTCCTGTGCATACAGGTAAT  1047
      |||||||| |||||||||| |||||||||||||||||||| |||||||||
seq2  ATTTTGTGAGTGTTCTGTGCGTGTTGTGTGTTCCTGTGCAAACAGGTAAT  1026

seq1  TGTTTGCAGTGTGGATGTCAGAGAACAGTTTCAGGAATTC  1087
      ||||||||||||||| |||||||||||||  |||||||||
seq2  TGTTTGCAGTGTGGAAGTCAGAGAACAGTACCAGGAATTC  1066

seq1: chr10_51897334_51898247
seq2: B6Ng01-161L10.g_70_912

seq1  GAATTCAAATGTTGTCTTAGGTTTTTTGTTTTTGTTTTTGTTTTCTGTTC  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAATTCAAATGTTGTCTTAAGTTTTTTGTTTTTGTTTTTGTTTTCTGTTC  50

seq1  TTTAGTTTTATTTCTGGATTGGATGATCCTCCTGCCTCTACCTTCTAAGT  100
      |||||| | |  || |||| ||||||||||||||||||||||||||||||
seq2  TTTAGTGTAAGGTCGGGATGGGATGATCCTCCTGCCTCTACCTTCTAAGT  100

seq1  GCACATAATACAGATGTACACCACCACACCTGGCCTAACAGGTCTCATTT  150
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  GCACATAATACAGATGTACGCCACCGCACCTGGCCTAACAGGTCTCATTT  150

seq1  AATGTGATATAATATGTATGGCAGAGTACTCTGTGGTTGGAAAAAGATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATATAATATGTATGGCAGAGTACTCTGTGGTTGGAAAAAGATGC  200

seq1  CTCAGTGATTTAAGGAGATTGTGGCAAAATTGACAAGCTGATTTCCAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGATTTAAGGAGATTGTGGCAAAATTGACAAGCTGATTTCCAACC  250

seq1  CAGAACTCACGTGGCAGAAGGGGAGCATGGCCCCTGAAAATTGTCCTCTG  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTCACGTGGCAGAAGGGGAGCATGGCCCCTGAAAATTGTCCTCTG  300

seq1  ATTTCCACACACATGCATGAACACATCCACCTATCCAACATAAACACTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCACACACATGCATGAACACATCCACCTATCCAACATAAACACTTA  350

seq1  ATAAATAAATAAATAAATACATTTTAAAAATGTTATAAGAAAATTCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAATAAATACATTTTAAAAATGTTATAAGAAAATTCTCCC  400

seq1  AGCAGAGATATCCCAGAGTGCATTCTTTCTTCCCTGTCAGGCCCAGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGCAGAGATATCCCAGAGTGCATTCTTTCTTCCCTGTCAGGCCCACCCTC  450

seq1  CCCTTTGTTCAACACTAGAAATTATAATCTCCTATATTAGATTGAAGATA  500
      ||||||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  CCCTTTGTTCAACGCTAAAAATTATAATCTCCTATATTAGATTGAAGATA  500

seq1  CAGTTTGTCCTTGTACTTGGGTTATAAGTTTCTGTATATTATGCAAATTT  550
      | | ||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  CCGCTTGTCCTTGTACTTGGGTTATAAGTTTCTGTATATAATGCAAAATT  550

seq1  GGCCAACTGAGCAGCAAAAACATTTATAATTGTATCTTAGCCAAACTGTG  600
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  GGCCAACTGAGCAGAAAAAACATTTATAATTGTATCTTAGCCTAACTGTG  600

seq1  TGCATATACTTAAAGTGTGCATGCCCTTCTTTTGTCTTAATTTCAT-AAA  649
      || ||||||| |||||||||||||||||| ||||||||||||| || |||
seq2  TGGATATACTAAAAGTGTGCATGCCCTTCATTTGTCTTAATTTTATAAAA  650

seq1  CAGTCCAGCCTAAAATACTAATTGAACTGAACATGGAGG-CCCAGGCCCA  698
      ||||||| ||||| ||||||||||||||||| ||||||| ||| | ||| 
seq2  CAGTCCATCCTAATATACTAATTGAACTGAATATGGAGGCCCCTGCCCCT  700

seq1  TAACACCATTGGCAGTAGAGGCAGGAAGCCCTGGAGGACATTGTTATCCT  748
      | ||||||||||| ||||||||||||||||| ||||||||||||| ||||
seq2  TCACACCATTGGCCGTAGAGGCAGGAAGCCCGGGAGGACATTGTT-TCCT  749

seq1  TAGCTACAGAGAGTGTTTGAGGTCAGTCTAGTCTACATGAGATATTGTCT  798
      |||||||||||||||| ||| | ||| ||||||| | |||||||| ||||
seq2  TAGCTACAGAGAGTGTGTGACGACAGCCTAGTCTTCTTGAGATATAGTCT  799

seq1  CTAAAGTATGGAGGAGGGAGGAGAGGTATGAGCTATTTCTATTGAATTAA  848
      || ||||||||| || ||||||||||  |||  |||||  |||||     
seq2  CTCAAGTATGGAAGAAGGAGGAGAGGCTTGA-ATATTTTCATTGA-----  843

seq1  TTATTAAAAATTAAAGATGTGAGATGTACACAGGTCATAATTCATATACT  898
                                                        
seq2  --------------------------------------------------  843

seq1  AATGCATTTTCATTGA  914
                      
seq2  ----------------  843