BAC Information

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BAC

Clone NameB6Ng01-165B19
Chromosome10 (Build37)
Map Location 109,496,419 - 109,562,862
singlet/doubletdoublet
Overlap genenone
Upstream geneNav3, LOC100042497
Downstream geneLOC100042502, LOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165B19.bB6Ng01-165B19.g
ACCDH957256DH957257
length631992
definitionDH957256|Mus musculus domesticus DNA, BAC clone: B6Ng01-165B19, 5' end.DH957257|Mus musculus domesticus DNA, BAC clone: B6Ng01-165B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,562,320 - 109,562,862)(109,496,419 - 109,497,291)
sequence
gaattctatgtacttgaatctgtttggtaaaggtggggtgggcctctcga
cttgtccctatgtgtgactcctttaaatatggtcatttgaaggctgacct
tatctggcagggcatcttgaagctcccaggtgacctgaacaaggccatgt
ttgcaaggtgctcccttttctctggctccatttttctttccccctgaagc
tgaaaatggactcccaagttctgaagacaactgacctgtgggaatagggg
ggactgtccttttggacctcttacttaacttcaaatctgatggcggatat
ggtgcttgttctggaattgcctctctcttgactgtagttagaaaaggagg
ggaatactcctgtgaccaccatggtctgctcctctcgcttctggggcact
atggaaataacttgttggtatctgggggagatggaaatgaagtgtatagt
ccttagttttacttgaaaatgtagactttatatgttgactccagatagat
atgataattagatttcaaattgggttatcacagtctcagcaaatattaca
tgtagtattcttgcaagtgggttggatagcctctaaggtcagtgattctc
agcctgtggctttgtgacccctttagtggtt
gaattctttgaacacttttgatgaggggtggccttatctgttctttgcta
tatcctttgagaaattttaatgtatgaatccttgactttgtgactaaata
gataaattagtatgaagatgtgggttgtcttgtctgatgccttctaaagc
aaatccaaccctgaggtcgccggggctggaactcagaggtagacattctg
ccccgacaaaaaaaacactaacgtcctgtctacatattcccttaaaaaat
gttccttattttcctcccaagcttccatgtccaaatggagtatgttgcat
gttttacaccaaagactccttctgagccaagtttaaattaacaacaaaag
tcacagtaatggcacatcgtttgtgggtttggcaatggcaagaaaagata
ccctccaaaaaaactcataccttttatggaaaccaaatagtgaccgcagt
tggcacacagaaaactgcacggacaaactaaactgctggaaaaactaatc
ctaattacttaggaatctgacgcccattctttacggtggaaaaccaaaga
taagaatgagtcataatttcatattctgggaaaggataaatgctcaccca
tctggtaatatgttttaaaaatatttccctgaagatacctaatatttcca
atattttcttacataacagactaagaataacttcgacgtgttaatgtcac
agaagaactgattataaactcagttgtgaaagaataaaaattaaaaaaaa
aactttcaactgaacaatatgtgatgggtactatgtaattaagaatactt
tatctattcttggattcaaaaatatttctagaacacaagagaattgtatg
ccctatctctgcctctgtctttgcatgcagggatattggactggaggaga
aaggcattgcacagtacctttgggtaatttttcttaagcagagactccca
acgattttttgacgaatatatatatatgtatgtatgtatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_109562320_109562862
seq2: B6Ng01-165B19.b_128_672 (reverse)

seq1  AACCACTAAAGGGGTCAC-AAGCCACAGGCTGAGAATCACTGACC-TAGA  48
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  AACCACTAAAGGGGTCACAAAGCCACAGGCTGAGAATCACTGACCTTAGA  50

seq1  GGCTATCCAACCCACTTGCAAGAATACTACATGTAATATTTGCTGAGACT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATCCAACCCACTTGCAAGAATACTACATGTAATATTTGCTGAGACT  100

seq1  GTGATAACCCAATTTGAAATCTAATTATCATATCTATCTGGAGTCAACAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAACCCAATTTGAAATCTAATTATCATATCTATCTGGAGTCAACAT  150

seq1  ATAAAGTCTACATTTTCAAGTAAAACTAAGGACTATACACTTCATTCCCA  198
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATAAAGTCTACATTTTCAAGTAAAACTAAGGACTATACACTTCATTTCCA  200

seq1  TCTCCACCCTTCCACAATATGCCTTCATTTCTAAACCCTTAATGCCTGCT  248
      ||||| ||        | || ||  ||  | ||   || || ||||  | 
seq2  TCTCCCCC--------AGATACCAACAAGT-TATTTCCATAGTGCC--CC  239

seq1  TAAAACAA----AGCAAAACA-------AACAAAACAAAACAACAGTTCT  287
        || | |    |||| | ||        |||  |  |  |  |   | |
seq2  AGAAGCGAGAGGAGCAGACCATGGTGGTCACAGGAGTATTCCCCTCCTTT  289

seq1  CCTAAGTCCACTCATG-GTCAAGGAATACGTATAACTTACACTCAAACTG  336
       |||| | || ||| | |  | | ||| |  | |||   |||   | | |
seq2  TCTAACTACAGTCAAGAGAGAGGCAATTC-CAGAACAAGCACCATATCCG  338

seq1  TGTTTTCCAAA---GAAGTTAAAGAATGGGTTTGCA--GACTTCCTCCCC  381
         |   || |   ||||||||  ||  |||    |  |||    |||||
seq2  CCAT---CAGATTTGAAGTTAAGTAAGAGGTCCAAAAGGAC--AGTCCCC  383

seq1  CCTCGCCCCCCAGGATAG-GATCTTGTAGAACTCCTGTAGAAATCC---T  427
      |||   ||| ||||  ||   ||||  ||||||    | | | |||   |
seq2  CCTATTCCCACAGGTCAGTTGTCTT-CAGAACT----TGGGAGTCCATTT  428

seq1  GCAG-AACTAGGGGAAAGAAAAACTAAAGCAACA-TAAAGGGAGCACCTT  475
       |||   |  ||||||||||||| |  ||| | |  ||||||||||||||
seq2  TCAGCTTCAGGGGGAAAGAAAAA-TGGAGCCAGAGAAAAGGGAGCACCTT  477

seq1  GCAAAC----CACTGCT---GTCACTTGGGGAGTGGGAATGTCAAGATGC  518
      ||||||    |  || |   |||||        |||||   |||||||||
seq2  GCAAACATGGCCTTGTTCAGGTCAC-------CTGGGAGCTTCAAGATGC  520

seq1  CCTGCCAGACAAGGACAGCCTTCAA  543
      ||||||||| |||| ||||||||||
seq2  CCTGCCAGATAAGGTCAGCCTTCAA  545

seq1: chr10_109496419_109497291
seq2: B6Ng01-165B19.g_196_1060

seq1  TCTTGTCTGATGCCTTCTAAAGTAAATCCAACCCTGAGCTTGCGGGTACT  50
      |||||||||||||||||||||| ||||||||||||||| | || ||  ||
seq2  TCTTGTCTGATGCCTTCTAAAGCAAATCCAACCCTGAGGTCGCCGGGGCT  50

seq1  GGCACTCTGAGGTAGTAGTTCTGCCCCGACAAGAAAAACACAAACATCCT  100
      || |||| |||||||   |||||||||||||| |||||||| ||| ||||
seq2  GGAACTCAGAGGTAGACATTCTGCCCCGACAAAAAAAACACTAACGTCCT  100

seq1  GTCTACATATTCCCTTAGAAAATGTTCAGCAGTTTCCTCCCAAGCTTCCA  150
      ||||||||||||||||| |||||||||   | ||||||||||||||||||
seq2  GTCTACATATTCCCTTAAAAAATGTTCCTTATTTTCCTCCCAAGCTTCCA  150

seq1  TGTCAAAATGGAGTATGTTGCATGTTTTACACCAAAGACCAGTTCTGAGC  200
      |||| ||||||||||||||||||||||||||||||||||   ||||||||
seq2  TGTCCAAATGGAGTATGTTGCATGTTTTACACCAAAGACTCCTTCTGAGC  200

seq1  CAAGTTTAAATTAAGAACAAAAGTCACAGTAATGGCACATCAGTTGTGGG  250
      |||||||||||||| ||||||||||||||||||||||||||  |||||||
seq2  CAAGTTTAAATTAACAACAAAAGTCACAGTAATGGCACATCGTTTGTGGG  250

seq1  TTTGGCAATGGCAAGAAAAGATACCCTCAAAGAAAACTCATACCTTTTAT  300
      |||||||||||||||||||||||||||| || ||||||||||||||||||
seq2  TTTGGCAATGGCAAGAAAAGATACCCTCCAAAAAAACTCATACCTTTTAT  300

seq1  GGAAACCAAATAGTGACCGCAGTTGGCACACAGAAAACTGCACGGACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCAAATAGTGACCGCAGTTGGCACACAGAAAACTGCACGGACAAA  350

seq1  CAAAACTGCTGGAAAAACAAATCCAAATTACATAGGAATCTGACACCCAT  400
      | |||||||||||||||| ||||| |||||| |||||||||||| |||||
seq2  CTAAACTGCTGGAAAAACTAATCCTAATTACTTAGGAATCTGACGCCCAT  400

seq1  TCTTTACGGTGGAAAACCAAAGATAAAAATGAGTCATAATTTCATATTCT  450
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTTTACGGTGGAAAACCAAAGATAAGAATGAGTCATAATTTCATATTCT  450

seq1  TGGAAAGGATAAATGCTCACCCATCTGGTAATATGTTTTAAAAATATTTC  500
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGATAAATGCTCACCCATCTGGTAATATGTTTTAAAAATATTTC  500

seq1  CCTGAAGATACCTAATATTTCCAATATTTTCTTACATAACAGACTAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGATACCTAATATTTCCAATATTTTCTTACATAACAGACTAAGAA  550

seq1  TAACTTCGACGTGTTAATGCCACAGAAGAACTGATTATAAACTCAGTTGT  600
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAACTTCGACGTGTTAATGTCACAGAAGAACTGATTATAAACTCAGTTGT  600

seq1  GAAAGAATAAAAGTT-AAAAAAAAACTTTCAACTGAACAATATGTGATGG  649
      |||||||||||| || ||||||||||||||||||||||||||||||||||
seq2  GAAAGAATAAAAATTAAAAAAAAAACTTTCAACTGAACAATATGTGATGG  650

seq1  GTACTATGTAATTTAAGAATACTTAATCTATTCTTGGATTCAAAAATATT  699
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  GTACTATGTAA-TTAAGAATACTTTATCTATTCTTGGATTCAAAAATATT  699

seq1  TCTAGAAGACAAGAGAATTGTATGCCCATATCTCTGCCTATGTCTTTGCA  749
      ||||||| ||||||||||||||||||| ||||||||||| ||||||||||
seq2  TCTAGAACACAAGAGAATTGTATGCCC-TATCTCTGCCTCTGTCTTTGCA  748

seq1  TGCAGGGATATTGGACTGGAGGAGAAAGGGCCATTGCACAGGTACCTTTG  799
      |||||||||||||||||||||||||||||  ||||||||| |||||||||
seq2  TGCAGGGATATTGGACTGGAGGAGAAAGG--CATTGCACA-GTACCTTTG  795

seq1  GGTAATTTTTCTGAAGCAGAGAAGTCCCAAAGGATTTTTTTGACAGAATA  849
      |||||||||||| |||||||| | |||||| |   ||||||||| |||||
seq2  GGTAATTTTTCTTAAGCAGAG-ACTCCCAACG--ATTTTTTGAC-GAATA  841

seq1  TATATATATGTATGTATGTATGTA  873
      ||||||||||||||||||||||||
seq2  TATATATATGTATGTATGTATGTA  865