BAC Information

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BAC

Clone NameB6Ng01-165C16
Chromosome10 (Build37)
Map Location 116,412,254 - 116,504,227
singlet/doubletdoublet
Overlap geneBest3, Lrrc10, Cct2
Upstream genePtprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741
Downstream geneFrs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165C16.bB6Ng01-165C16.g
ACCDH957298DH957299
length1,052814
definitionDH957298|Mus musculus domesticus DNA, BAC clone: B6Ng01-165C16, 5' end.DH957299|Mus musculus domesticus DNA, BAC clone: B6Ng01-165C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,412,254 - 116,413,303)(116,503,419 - 116,504,227)
sequence
gaattcatgtaactgcgataagaggtacagtttgttcttatttgttacct
ttcaaaaactagaaaacagaagtaagtatttgtgtgaaggaggaggagga
ggaagaagaggagaaggaggacgaggagatccctggtgtgtaaggagatc
tcctcagacacacacacacacacacacaccaaaccacacacacatgcaca
cagagacagtcaataatgatcattgcgggtttcttgttgacttttacaaa
acacattattttatcaaaacggtagcagcatttttcaagaattggagaaa
ctatttggaaaaccataaagaaggcaaggccaccattgggaatcaaatgt
aacttggaagctacgaaccttagcattggcatcatggagggtgctcggct
ctccaggtacacagcagagtgggagaaaccataaggccccccacagtgca
gcaaggatgctctctggtcctaggctcccacagtgcagcaaggatgcgct
ctggtcctaggctcccacagtgcagcagggactcgctctggtcctagttt
tgacatgttcaaagggaagttgcacctggctctggaaagcttctgactct
atctaccttttgtgaactgactcccgtgtgaagacacagaccgtgtccaa
gaacaaaggcacacacataagagttttgagataattgtgtattataacca
gtggtgtgcctgtcagcccagtatgccgtataaccagttcccagaagcgc
gccattgctcatctgaagcagaccaggattggctttcctcctggggagga
ccgtgacccactctcaagtcccaaatgtgaagcaatccattatgaaactc
acagtcttctcagaacaactgtgcaccagtgtgcatcccccataagtgac
cttggctcttctcataaatctaaggaccttcccaaccccacccctacccc
catgtgctgtacattattccaaagatctttgcatttttcaatatcttcag
ttggtggccaccaaaattcttatccgaattatagaaaaaagaatgagaag
ca
aagctacagagagcttgctgtagcccaggcacccgcccactaagcaatgt
agtcttgcttttgtgaaatacatattctgattacatccgtttcatacacc
aggaaattgaggcacagacgtaatgtagctaggggcagtcacttaacaga
attcaccaaaggaattccaaccataggcaagaaagactgagggcggcggg
acagggagagggcgtcataagacaggataaagagccaagagaacccgagg
aggagtaacaaatgagaggaataagcaagggtggcccctggaccctgcaa
cattcccggttcaaaaatgctacacaagttataaaatgcttagagacaaa
catttggggtggggggtgtaagatgacacattcagccagtgggacttttg
gaaatagctttcagtcagtcaactcagaacatttggagcttagttccaag
tgaagggaggggcagaggaggaagagaccatagatgcaggggagaagaca
gtctctagagcccccttccaggggactgactcctgagtgccactcagctc
agagctacaggatggcaggtctgtctctctgttctatttccaaagccttt
atgttcacctactttttctaaaatctgatagggaggggacactggtaacc
cttcacccacagtctaagtttgcctgccaccccactgaacactatatact
tttgtgcataatgaaagcagccttttaaaatgggaggtatgttagctttc
ttagtgtgattgctcctaaataccacctttggatctgctcatgaaaatgc
tgttcaggaggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_116412254_116413303
seq2: B6Ng01-165C16.b_43_1094

seq1  GAATTCATGTAACTGCGATAAGAGGTACAGTTTGTTCTTATTTGTTACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAACTGCGATAAGAGGTACAGTTTGTTCTTATTTGTTACCT  50

seq1  TTCAAAAACTAGAAAACAGAAGTAAGTATTTGTGTGAAGGAGGAGGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAACTAGAAAACAGAAGTAAGTATTTGTGTGAAGGAGGAGGAGGA  100

seq1  GGAAGAAGAGGAGAAGGAGGACGAGGAGATCCCTGGTGTGTAAGGAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGAGGAGAAGGAGGACGAGGAGATCCCTGGTGTGTAAGGAGATC  150

seq1  TCCTCAGACACACACACACACACACACACCAAACCACACACACATGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGACACACACACACACACACACACCAAACCACACACACATGCACA  200

seq1  CAGAGACAGTCAATAATGATCATTGCGGGTTTCTTGTTGACTTTTACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGTCAATAATGATCATTGCGGGTTTCTTGTTGACTTTTACAAA  250

seq1  ACACATTATTTTATCAAAACGGTAGCAGCATTTTTCAAGAATTGGAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTATTTTATCAAAACGGTAGCAGCATTTTTCAAGAATTGGAGAAA  300

seq1  CTATTTGGAAAACCATAAAGAAGGCAAGGCCACCATTGGGAATCAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGGAAAACCATAAAGAAGGCAAGGCCACCATTGGGAATCAAATGT  350

seq1  AACTTGGAAGCTACGAACCTTAGCATTGGCATCATGGAGGGTGCTCGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGAAGCTACGAACCTTAGCATTGGCATCATGGAGGGTGCTCGGCT  400

seq1  CTCCAGGTACACAGCAGAGTGGGAGAAACCATAAGGCCCCCCACAGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGTACACAGCAGAGTGGGAGAAACCATAAGGCCCCCCACAGTGCA  450

seq1  GCAAGGATGCTCTCTGGTCCTAGGCTCCCACAGTGCAGCAAGGATGCGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGATGCTCTCTGGTCCTAGGCTCCCACAGTGCAGCAAGGATGCGCT  500

seq1  CTGGTCCTAGGCTCCCACAGTGCAGCAGGGACTCGCTCTGGTCCTAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCTAGGCTCCCACAGTGCAGCAGGGACTCGCTCTGGTCCTAGTTT  550

seq1  TGACATGTTCAAAGGGAAGTTGCACCTGGCTCTGG-AAGCTTCTGACTCT  599
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGACATGTTCAAAGGGAAGTTGCACCTGGCTCTGGAAAGCTTCTGACTCT  600

seq1  ATCTACCTTTTGTGAACTGACTCCCGTGTGAAGACACAGACCGTGTCCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCTTTTGTGAACTGACTCCCGTGTGAAGACACAGACCGTGTCCAA  650

seq1  GAACAAAGGCACACACATAAGAG-TTTGAGATAATTGTGTATTATAACCA  698
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAACAAAGGCACACACATAAGAGTTTTGAGATAATTGTGTATTATAACCA  700

seq1  GTGGTGTGCCTGTCAGCCCAGTATGCCGTATAACCAGTTCCCAGAAGCGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTGCCTGTCAGCCCAGTATGCCGTATAACCAGTTCCCAGAAGCGC  750

seq1  GCCATTGCTCATCTGAAGCAGACCAGGATTGGCTTTCCTCCT-GGGAGGA  797
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCCATTGCTCATCTGAAGCAGACCAGGATTGGCTTTCCTCCTGGGGAGGA  800

seq1  CCGTGACCCACTCTCAAGT-CCAAATGTGAAGCAATCCATTATGAAACTC  846
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCGTGACCCACTCTCAAGTCCCAAATGTGAAGCAATCCATTATGAAACTC  850

seq1  ACAGTCTTCTCAGAACAACTGTGCA-CAGTGTGCATCCCCCATAAGTGAC  895
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACAGTCTTCTCAGAACAACTGTGCACCAGTGTGCATCCCCCATAAGTGAC  900

seq1  CATGGCTCTTCTCAATAATTCTTAGGACCTCCCCAACCCCACCCCACCCC  945
      | ||||||||||| |||| ||| ||||||| ||||||||||||||  |||
seq2  CTTGGCTCTTCTC-ATAAATCTAAGGACCTTCCCAACCCCACCCCTACCC  949

seq1  CCATGTGCTGTCACAGTAATCCAAAAGACTATGCATTTTCCAAATATCAT  995
      ||||||||||| ||| || ||||||   || |||||||| | |||||| |
seq2  CCATGTGCTGT-ACATTATTCCAAAGATCTTTGCATTTTTC-AATATCTT  997

seq1  CAGTTGGT-GCCACCAAAATTTCATACTCCAGATTATAG-AAAATGAATG  1043
      |||||||| |||||||||| ||| || |||  ||||||| |||| |||||
seq2  CAGTTGGTGGCCACCAAAA-TTCTTA-TCCGAATTATAGAAAAAAGAATG  1045

seq1  AGAAGCA  1050
      |||||||
seq2  AGAAGCA  1052

seq1: chr10_116503419_116504227
seq2: B6Ng01-165C16.g_78_891 (reverse)

seq1  CTGCCTCCTGAACAGCATTTTCATGAGCAGATCC-AAGGTGGTATTTAGG  49
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGCCTCCTGAACAGCATTTTCATGAGCAGATCCAAAGGTGGTATTTAGG  50

seq1  AGCAATCACACTAAG-AAGCTAACATACCTGCACATTTTAAAAGGCTGCT  98
      ||||||||||||||| |||||||||||||| | |||||||||||||||||
seq2  AGCAATCACACTAAGAAAGCTAACATACCT-CCCATTTTAAAAGGCTGCT  99

seq1  TTCATTATGCAC-AAAGTATATAGTGTTCAGT-GGGTGGCAGGCAAACTT  146
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  TTCATTATGCACAAAAGTATATAGTGTTCAGTGGGGTGGCAGGCAAACTT  149

seq1  AGACTGTGGGTGAAGGGTTACCAGTGTCCCCTCCCTATCAGATTTTAG-A  195
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGACTGTGGGTGAAGGGTTACCAGTGTCCCCTCCCTATCAGATTTTAGAA  199

seq1  AGAGTAGGTGAACATAAAGGCTTTGG-AATAGAACAGAGAGACAGACCTG  244
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAGTAGGTGAACATAAAGGCTTTGGAAATAGAACAGAGAGACAGACCTG  249

seq1  CCATCCTGTAGCTCTGAGCTGAGTGGCACTCAGGAGTCAGTCCCCTGGAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTGTAGCTCTGAGCTGAGTGGCACTCAGGAGTCAGTCCCCTGGAA  299

seq1  GGGGGCTCTAGAGACTGTCTTCTCCCCTGCATCTTTGGTCTCTTCCTCCT  344
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGGGCTCTAGAGACTGTCTTCTCCCCTGCATCTATGGTCTCTTCCTCCT  349

seq1  CTGCCCCTCCCTTCACTTGGAACTAAGCTCCAAATGTTCTGAGTTGACTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCTCCCTTCACTTGGAACTAAGCTCCAAATGTTCTGAGTTGACTG  399

seq1  ACTGAAAGCTATTTCCAAAAGTCCCACTGGCTGAATGTGTCATCTTACAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAGCTATTTCCAAAAGTCCCACTGGCTGAATGTGTCATCTTACAC  449

seq1  CCCCCACCCCAAATGTTTGTCTCTAAGCATTTTATAACTTGTGTAGCATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCAAATGTTTGTCTCTAAGCATTTTATAACTTGTGTAGCATT  499

seq1  TTTGAACCGGGAATGTTGCAGGGTCCAGGGGCCACCCTTGCTTATTCCTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACCGGGAATGTTGCAGGGTCCAGGGGCCACCCTTGCTTATTCCTC  549

seq1  TCATTTGTTACTCCTCCTCGGGTTCTCTTGGCTCTTTATCCTGTCTTATG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTTACTCCTCCTCGGGTTCTCTTGGCTCTTTATCCTGTCTTATG  599

seq1  ACGCCCTCTCCCTGTCCCGCCGCCCTCAGTCTTTCTTGCCTATGGTTGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCTCTCCCTGTCCCGCCGCCCTCAGTCTTTCTTGCCTATGGTTGGA  649

seq1  ATTCCTTTGGTGAATTCTGTTAAGTGACTGCCCCTAGCTACATTACGTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTGGTGAATTCTGTTAAGTGACTGCCCCTAGCTACATTACGTCT  699

seq1  GTGCCTCAATTTCCTGGTGTATGAAACGGATGTAATCAGAATATGTATTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCAATTTCCTGGTGTATGAAACGGATGTAATCAGAATATGTATTT  749

seq1  CACAAAAGCAAGACTACATTGCTTAGTGGGCGGGTGCCTGGGCTACAGCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGCAAGACTACATTGCTTAGTGGGCGGGTGCCTGGGCTACAGCA  799

seq1  AGCTCTCTGTAGCTT  809
      |||||||||||||||
seq2  AGCTCTCTGTAGCTT  814