BAC Information

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BAC

Clone NameB6Ng01-166C07
Chromosome10 (Build37)
Map Location 43,993,733 - 44,137,893
singlet/doubletdoublet
Overlap geneAtg5
Upstream genePdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1
Downstream geneLOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves, Lin28b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166C07.bB6Ng01-166C07.g
ACCDH958001DH958002
length3211,163
definitionDH958001|Mus musculus domesticus DNA, BAC clone: B6Ng01-166C07, 5' end.DH958002|Mus musculus domesticus DNA, BAC clone: B6Ng01-166C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,993,733 - 43,994,053)(44,136,715 - 44,137,893)
sequence
gaattctttgaaccctacagatccagtagtatataactcctctcctcctt
atagaagcttctgtagagccagaggaagtagacttgttggacaggacaga
acctttacatatgatcttaccgtttgcagtgaccacatgggcaagaccta
tacagagcaagccagcccacatccaggatgggaggggaggggctcatgca
gttcctggagctgagcagctgtggctgctgggagagggagagtcagctta
tgcctcagtaggttgccctgttcaggtgaactctgaaaagctcaggacgc
tgggagggagttggggggggg
gaattcctgcttgtcaggggctttgggatcactgacttgcacaatcccca
acacccatatccttgcccccatttccaaggaggtatctagctccttggtc
tgcattgttgggaagtcctgccctctttaactgcctctgtccatttcaca
cacacacacacacacacacacacacacatcatcatcatcatcatcatcat
catccactgagagctggggatctgcggatggaaacttcttcccacacttt
gctgtcttcgagtttggccattgcttcctgtggtgaagtctgaggtggac
aacactacagtattgatgagtgacaaagaaacatggggataagatgtggt
gcaaaggtcatcttcaaagaatcctgtcacatcgataaaaaccttctgcc
agctcatgaacgcaggaagggttcatgggacccagtgctaacagagcatg
tgggttgaggctcatttagagtctcttaaactctgtgtgttccttgtaag
aaatcctagaggatctgctccattcacagtccacaacaggcaggaaacag
atcaaacaacagagccagaggaaagacgcaggcagccactgactgtcctg
aggctagggagcaggaggaggcagtttagtgtgggagacaatgaccctag
ccacagcttcccaacaccaagagacatcaccatcttaaagtcgccaaaag
taaaacagaccatgatcaactccaacactgcgaagaggctcctagcctcc
ttacggaattcttacacacaatggttagttttatttctgaaagatgctgg
tggcagtaactggaggggaatgactcagtccccgggatctctggatggcc
aggttttatatttgcatgtgagttatcccaaagacagacagacattcatc
tcttaaaccaggttcagtatctgtactttgacgtcacaagtgacagctcg
cgggttatgaaattgtaaacgaggtctttaaggagttgcaaagtcgagaa
ggttcaaccggttccaaccagagctgaagtgacagggcatgctcatgttg
cattcatgaaaattcatagcttctttggagggcccagaactgggtacaag
gtcctccctttctgctaaaagaactttatttctggaattataaaattttt
acctaagggaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_43993733_43994053
seq2: B6Ng01-166C07.b_44_364

seq1  GAATTCTTTGAACCCTACAGATCCAGTAGTATATAACTCCTCTCCTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAACCCTACAGATCCAGTAGTATATAACTCCTCTCCTCCTT  50

seq1  ATAGAAGCTTCTGTAGAGCCAGAGGAAGTAGACTTGTTGGACAGGACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGCTTCTGTAGAGCCAGAGGAAGTAGACTTGTTGGACAGGACAGA  100

seq1  ACCTTTACATATGATCTTACCGTTTGCAGTGACCACATGGGCAAGACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTACATATGATCTTACCGTTTGCAGTGACCACATGGGCAAGACCTA  150

seq1  TACAGAGCAAGCCAGCCCACATCCAGGATGGGAGGGGAGGGGCTCATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGCAAGCCAGCCCACATCCAGGATGGGAGGGGAGGGGCTCATGCA  200

seq1  GTTCCTGGAGCTGAGCAGCTGTGGCTGCTGGGAGAGGGAGAGTCAGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGGAGCTGAGCAGCTGTGGCTGCTGGGAGAGGGAGAGTCAGCTTA  250

seq1  TGCCTCAGTAGGTTGCCCTGTTCAGGTGAACTCTGAAAAGCTCAGGACGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAGTAGGTTGCCCTGTTCAGGTGAACTCTGAAAAGCTCAGGACGC  300

seq1  TGGGAGGGAGTTGGGGGGGGG  321
      |||||||||||||||||||||
seq2  TGGGAGGGAGTTGGGGGGGGG  321

seq1: chr10_44136715_44137893
seq2: B6Ng01-166C07.g_67_1229 (reverse)

seq1  CTTTCCCTTTAGTAAAAATATTTTTATAATCCAGGAAATAAAGTACTTTT  50
      |||||||||  |||||||   ||||||||| |  |||||||||| |||||
seq2  CTTTCCCTTAGGTAAAAA---TTTTATAATTCCAGAAATAAAGTTCTTTT  47

seq1  ATGCAGAAAGGGAGGAACCTTTGTACACAG-TCTGGGCCCTCCAAAGAGA  99
      | ||||||||||||||  | |||||| ||| |||||||||||||||||  
seq2  A-GCAGAAAGGGAGGA--CCTTGTACCCAGTTCTGGGCCCTCCAAAGAAG  94

seq1  CTATGAATTTTTCATTGTATGCAACATGAGCATTGGCCCTGGTCACTTCA  149
      ||||||| |||||| || |||||||||||||||  ||||| |||||||||
seq2  CTATGAA-TTTTCA-TGAATGCAACATGAGCAT--GCCCT-GTCACTTCA  139

seq1  GCTCTGGTTGGAACCGGGTTGAACCCTTCTCGACTTTGCAACTCC-TAAA  198
      ||||||||||||||| ||||||| ||||||||||||||||||||| ||||
seq2  GCTCTGGTTGGAACC-GGTTGAA-CCTTCTCGACTTTGCAACTCCTTAAA  187

seq1  GACCTCGTTTAACAAATTTCATAACCCGCGAGCCTGTCACTTGGTGACGT  248
      |||||||||||   |||||||||||||||||| ||||||||| |||||||
seq2  GACCTCGTTTA--CAATTTCATAACCCGCGAG-CTGTCACTT-GTGACGT  233

seq1  CAAAGTACAGATACTGAACCTGGTTTAAGAGATGAATGTCTGTCTTGTCT  298
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAAAGTACAGATACTGAACCTGGTTTAAGAGATGAATGTCTGTC-TGTCT  282

seq1  TTGGGATAACTCACATGCAAATATAAAACCTGGCCATCCAGAGATCCCGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATAACTCACATGCAAATATAAAACCTGGCCATCCAGAGATCCCGG  332

seq1  GGACTGAGTCATTCCCCTCCAGTTACTGCCACCAGCATCTTTCAGAAATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAGTCATTCCCCTCCAGTTACTGCCACCAGCATCTTTCAGAAATA  382

seq1  AAACTAACCATTGTGTGTAAGAATTCCGTAAGGAGGCTAGGAGCCTCTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAACCATTGTGTGTAAGAATTCCGTAAGGAGGCTAGGAGCCTCTTC  432

seq1  GCAGTGTTGGAGTTGATCATGGTCTGTTTTACTTTTGGCGACTTTAAGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTTGGAGTTGATCATGGTCTGTTTTACTTTTGGCGACTTTAAGAT  482

seq1  GGTGATGTCTCTTGGTGTTGGGAAGCTGTGGCTAGGGTCATTGTCTCCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGTCTCTTGGTGTTGGGAAGCTGTGGCTAGGGTCATTGTCTCCCA  532

seq1  CACTAAACTGCCTCCTCCTGCTCCCTAGCCTCAGGACAGTCAGTGGCTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAACTGCCTCCTCCTGCTCCCTAGCCTCAGGACAGTCAGTGGCTGC  582

seq1  CTGCGTCTTTCCTCTGGCTCTGTTGTTTGATCTGTTTCCTGCCTGTTGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTCTTTCCTCTGGCTCTGTTGTTTGATCTGTTTCCTGCCTGTTGTG  632

seq1  GACTGTGAATGGAGCAGATCCTCTAGGATTTCTTACAAGGAACACACAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGAATGGAGCAGATCCTCTAGGATTTCTTACAAGGAACACACAGA  682

seq1  GTTTAAGAGACTCTAAATGAGCCTCAACCCACATGCTCTGTTAGCACTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGAGACTCTAAATGAGCCTCAACCCACATGCTCTGTTAGCACTGG  732

seq1  GTCCCATGAACCCTTCCTGCGTTCATGAGCTGGCAGAAGGTTTTTATCGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATGAACCCTTCCTGCGTTCATGAGCTGGCAGAAGGTTTTTATCGA  782

seq1  TGTGACAGGATTCTTTGAAGATGACCTTTGCACCACATCTTATCCCCATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGGATTCTTTGAAGATGACCTTTGCACCACATCTTATCCCCATG  832

seq1  TTTCTTTGTCACTCATCAATACTGTAGTGTTGTCCACCTCAGACTTCACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTCACTCATCAATACTGTAGTGTTGTCCACCTCAGACTTCACC  882

seq1  ACAGGAAGCAATGGCCAAACTCGAAGACAGCAAAGTGTGGGAAGAAGTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGCAATGGCCAAACTCGAAGACAGCAAAGTGTGGGAAGAAGTTT  932

seq1  CCATCCGCAGATCCCCAGCTCTCAGTGGATGATGATGATGATGATGATGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCGCAGATCCCCAGCTCTCAGTGGATGATGATGATGATGATGATGA  982

seq1  TGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAATGGACAGAGGCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAATGGACAGAGGCA  1032

seq1  GTTAAAGAGGGCAGGACTTCCCAACAATGCAGACCAAGGAGCTAGATACC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGAGGGCAGGACTTCCCAACAATGCAGACCAAGGAGCTAGATACC  1082

seq1  TCCTTGGAAATGGGGGCAAGGATATGGGTGTTGGGGATTGTGCAAGTCAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGAAATGGGGGCAAGGATATGGGTGTTGGGGATTGTGCAAGTCAG  1132

seq1  TGATCCCAAAGCCCCTGACAAGCAGGAATTC  1179
      |||||||||||||||||||||||||||||||
seq2  TGATCCCAAAGCCCCTGACAAGCAGGAATTC  1163