BAC Information

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BAC

Clone NameB6Ng01-166P06
Chromosome10 (Build37)
Map Location 5,933,686 - 6,042,986
singlet/doubletdoublet
Overlap geneRmnd1, Zbtb2, Akap12
Upstream geneSyne1, Esr1, LOC100041310, Gm221, 1700052N19Rik
Downstream geneMthfd1l, Plekhg1, Iyd, Ppp1r14c, EG666520
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166P06.bB6Ng01-166P06.g
ACCDH958584DH958585
length1,068777
definitionDH958584|Mus musculus domesticus DNA, BAC clone: B6Ng01-166P06, 5' end.DH958585|Mus musculus domesticus DNA, BAC clone: B6Ng01-166P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,933,686 - 5,934,769)(6,042,207 - 6,042,986)
sequence
gaattctaggagatatacgtgttcttccaacagacttagaaatctggagt
ccacgccctccttttctttctttaacttcttttatctttggctttgaagt
tttagttctttggcttttttttttttttggttttgtattaaaattactaa
aaatttcattgttgggctggggtggtgcacacctttaacccaagtactca
ggcagcaaaattaggcagatctctgtgagttcaaggccagcctgctccac
agactaagttccaggacagccagggctacacagagaaaccctgtctcaaa
aaaatcaaaagtatgggcttgagatatggctcagcaggtaagatcatcga
ctgctcttccgaaggacctgagttcaaatcccagcaaccacatggtggct
cacaaccatccataacaagatctgactccctcttctggagtgtctgaagg
cagctacagtatacttacatataataaataaataaatcttaaaaaaaaaa
aaaaaaaaaagtgctgggcggtggtggcccacgcctttaatccctgcact
tgggaggcagagacaggtggatttctgagttcgaggccagcctggtctac
aaagtgagttccaggacagccaggactatacagagaaacgctgtcttgaa
aaaaacaaaaaagggggctggagagatggctcagcggttaagagcactga
ctgctcttccaaaggtcctgagttcaaatcccagcaaccacatggtggct
cacaactatctgtgataggatctgatgccctcttctggtgtgtctgaaga
cagctacaatgtactcatataaaaaaattaaataaatctaaaaaaaaaaa
aaaaaaccagaaaagaaaaaacaaaaccaaaaccaagtaagtgaataact
aaaatagttgactacatagaatcatgtgacagtccattgccttcgtgtct
gagccatacttagaggtcgggtcagctcgagtcatcagactcagtatgag
ctcatgccagctgcgcatttgctgttagtgagagcaacgaagccctgtgc
acctgtgagcacttgtga

gaattcactgtatattttgtttgctttgatctcagcaatccacctgcctc
gctgtcctgggtgctaggattacaggtgcatactcctgcattagctcaca
gctgccattttcatttttctgtcactttagagtactactttgctgccttt
gtgtttaggacgacggatgatggcccgtgatttgtcctggatagcttgta
tgtatgctctgcagctctgaactcacccttgacctcacagtagaggtcaa
agctctagctatgtcttacttcctgttctgctgtgaagagacaccatggt
catggcgacatgcaatagaaagcatttaattgggggattgattacagttt
cagagggtgagcccatgaccaatatagtggggagcatgacagcaggcagg
caggcaggcaggcaggcaagcatgccactggagcagtggctgagagcttc
catactaataatccacagacagcaggcagagggcagtggtggggggaggg
aggcagaggtgaaggcaaagagagagggcacaggagaagcccgagagagg
aggcagagaggggaatggggggggctttttatcctcagcacaccccttgg
aagcagcaggtgatgactgctacgaccctgagagcaggctggtaggatcg
cctgtatcctaacaacgtccatgcagaggaagatgctagaagcatcaggg
atgcagtttatatttcacacacctttttactgtgtgttactgagcgttgc
ataacctgactgaaggttatgggtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_5933686_5934769
seq2: B6Ng01-166P06.b_45_1112

seq1  GAATTCTAGGAGATATACGTGTTCTTCCAACAGACTTAGAAATCTGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAGATATACGTGTTCTTCCAACAGACTTAGAAATCTGGAGT  50

seq1  CCACGCCCTCCTTTTCTTTCTTTAACTTCTTTTATCTTTGGCTTTGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCCTCCTTTTCTTTCTTTAACTTCTTTTATCTTTGGCTTTGAAGT  100

seq1  TTTAGTTCTTTGGCTTTTTTTTTTTTTTGGTTTTGTATTAAAATTACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCTTTGGCTTTTTTTTTTTTTTGGTTTTGTATTAAAATTACTAA  150

seq1  AAATTTCATTGTTGGGCTGGGGTGGTGCACACCTTTAACCCAAGTACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCATTGTTGGGCTGGGGTGGTGCACACCTTTAACCCAAGTACTCA  200

seq1  GGCAGCAAAATTAGGCAGATCTCTGTGAGTTCAAGGCCAGCCTGCTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAAAATTAGGCAGATCTCTGTGAGTTCAAGGCCAGCCTGCTCCAC  250

seq1  AGACTAAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAA  300

seq1  AAAATCAAAAGTATGGGCTTGAGATATGGCTCAGCAGGTAAGATCATCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAAAGTATGGGCTTGAGATATGGCTCAGCAGGTAAGATCATCGA  350

seq1  CTGCTCTTCCGAAGGACCTGAGTTCAAATCCCAGCAACCACATGGTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTCCGAAGGACCTGAGTTCAAATCCCAGCAACCACATGGTGGCT  400

seq1  CACAACCATCCATAACAAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCATCCATAACAAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGG  450

seq1  CAGCTACAGTATACTTACATATAATAAATAAATAAATCTTAAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACAGTATACTTACATATAATAAATAAATAAATCTTAAAAAAAAAA  500

seq1  AAAAAAAAAAGTGCTGGGCGGTGGTGGCCCACGCCTTTAATCCCTGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGTGCTGGGCGGTGGTGGCCCACGCCTTTAATCCCTGCACT  550

seq1  TGGGAGGCAGAGACAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAGAGACAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAC  600

seq1  AAAGTGAGTTCCAGGACAGCCAGGACTATACAGAGAAACGCTGTCTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGTTCCAGGACAGCCAGGACTATACAGAGAAACGCTGTCTTGAA  650

seq1  AAAAACAAAAAAGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAAAGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGA  700

seq1  CTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCT  750

seq1  CACAACTATCTGTGATAGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTATCTGTGATAGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGA  800

seq1  CAGCTACAATGTACTCATATAAAAAAATTAAATAAATCTAAAAAAAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACAATGTACTCATATAAAAAAATTAAATAAATCTAAAAAAAAAAA  850

seq1  AAAAAACCAGAAAAGAAAAAACAAAAACCAAAAACCAAGTAAGTGAATAA  900
      ||||||||||||||||||||||||||  | ||||||||||||||||||||
seq2  AAAAAACCAGAAAAGAAAAAACAAAA--CCAAAACCAAGTAAGTGAATAA  898

seq1  CTAAAATAGTTGACTACATAGAAATCATGTGACAGTCCATTGCCTTCGTG  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTAAAATAGTTGACTACATAG-AATCATGTGACAGTCCATTGCCTTCGTG  947

seq1  TCTGAGCCATACTTAGAGGGCCGGGGTCAGGCTCGAAGTCATCAGGACTC  1000
      ||||||||||||||||||| |  |||||| ||||| |||||||| |||||
seq2  TCTGAGCCATACTTAGAGGTC--GGGTCA-GCTCG-AGTCATCA-GACTC  992

seq1  AGGTATGAGCTCCATGCCCAGCTGCGCATTTGCCTGTTAGTGAGAGGCAA  1050
      | ||||||||| |||| ||||||||||||||| |||||||||||| ||||
seq2  A-GTATGAGCT-CATG-CCAGCTGCGCATTTG-CTGTTAGTGAGA-GCAA  1037

seq1  CAGAGGCCCTGTGCACTCTGTGAGCACTCTGTGA  1084
      | || ||||||||||| ||||||||||| |||||
seq2  C-GAAGCCCTGTGCAC-CTGTGAGCACT-TGTGA  1068


seq1: chr10_6042207_6042986
seq2: B6Ng01-166P06.g_69_845 (reverse)

seq1  AAAACCCATAGCC-TCAGTCAGGGTTATGCAGACGCTCAGGTAACACAAC  49
      |||||||||| || ||||||| ||||||||| ||||||| ||||||| ||
seq2  AAAACCCATAACCTTCAGTCA-GGTTATGCA-ACGCTCA-GTAACAC-AC  46

seq1  AGTAAAAAGGTGTGTGAATCTAAAACTGCATCCCTGATGCTTCTAGCATC  99
      ||||||||||||||||||    ||||||||||||||||||||||||||||
seq2  AGTAAAAAGGTGTGTGAAATATAAACTGCATCCCTGATGCTTCTAGCATC  96

seq1  TTCCTCTGCATGGACGTTGTTAGGATACAGGCGATCCTACCAGCCTGCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGCATGGACGTTGTTAGGATACAGGCGATCCTACCAGCCTGCTC  146

seq1  TCAGGGTCGTAGCAGTCATCACCTGCTGCTTCCAAGGGGTGTGCTGAGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTCGTAGCAGTCATCACCTGCTGCTTCCAAGGGGTGTGCTGAGGA  196

seq1  TAAAAAGCCCCCCCCATTCCCCTCTCTGCCTCCTCTCTCGGGCTTCTCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCCCCCCCCATTCCCCTCTCTGCCTCCTCTCTCGGGCTTCTCCT  246

seq1  GTGCCCTCTCTCTTTGCCTTCACCTCTGCCTCCCTCCCCCCACCACTGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTCTCTCTTTGCCTTCACCTCTGCCTCCCTCCCCCCACCACTGCC  296

seq1  CTCTGCCTGCTGTCTGTGGATTATTAGTATGGAAGCTCTCAGCCACTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTGCTGTCTGTGGATTATTAGTATGGAAGCTCTCAGCCACTGCT  346

seq1  CCAGTGGCATGCTTGCCTGCCTGCCTGCCTGCCTGCCTGCTGTCATGCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGCATGCTTGCCTGCCTGCCTGCCTGCCTGCCTGCTGTCATGCTC  396

seq1  CCCACTATATTGGTCATGGGCTCACCCTCTGAAACTGTAATCAATCCCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTATATTGGTCATGGGCTCACCCTCTGAAACTGTAATCAATCCCCC  446

seq1  AATTAAATGCTTTCTATTGCATGTCGCCATGACCATGGTGTCTCTTCACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATGCTTTCTATTGCATGTCGCCATGACCATGGTGTCTCTTCACA  496

seq1  GCAGAACAGGAAGTAAGACATAGCTAGAGCTTTGACCTCTACTGTGAGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACAGGAAGTAAGACATAGCTAGAGCTTTGACCTCTACTGTGAGGT  546

seq1  CAAGGGTGAGTTCAGAGCTGCAGAGCATACATACAAGCTATCCAGGACAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTGAGTTCAGAGCTGCAGAGCATACATACAAGCTATCCAGGACAA  596

seq1  ATCACGGGCCATCATCCGTCGTCCTAAACACAAAGGCAGCAAAGTAGTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGGGCCATCATCCGTCGTCCTAAACACAAAGGCAGCAAAGTAGTAC  646

seq1  TCTAAAGTGACAGAAAAATGAAAATGGCAGCTGTGAGCTAATGCAGGAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGTGACAGAAAAATGAAAATGGCAGCTGTGAGCTAATGCAGGAGT  696

seq1  ATGCACCTGTAATCCTAGCACCCAGGACAGCGAGGCAGGTGGATTGCTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCTGTAATCCTAGCACCCAGGACAGCGAGGCAGGTGGATTGCTGA  746

seq1  GATCAAAGCAAACAAAATATACAGTGAATTC  780
      |||||||||||||||||||||||||||||||
seq2  GATCAAAGCAAACAAAATATACAGTGAATTC  777


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