BAC Information

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BAC

Clone NameB6Ng01-167N08
Chromosome10 (Build37)
Map Location 56,525,911 - 56,640,706
singlet/doubletdoublet
Overlap geneLOC100042628
Upstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355
Downstream geneEG629739, LOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167N08.bB6Ng01-167N08.g
ACCDH959227DH959228
length1,1261,125
definitionDH959227|Mus musculus domesticus DNA, BAC clone: B6Ng01-167N08, 5' end.DH959228|Mus musculus domesticus DNA, BAC clone: B6Ng01-167N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,525,911 - 56,527,046)(56,639,571 - 56,640,706)
sequence
gaattccatcatgtcttctaaagtttatgacatatttcttcccttcttcc
cccctccctcccttactccctccctctctctctccctccttccctccctc
ccttcctttcttccttcctttcttctccccctcccttcctccactctttg
ctcccactcttccttctttccttcctccactctataccctctcaccaaga
tactatcaatagactaattttgaatttatggtattactttaccttttagt
acctagccaccctcccccccatcttagtttacacatttctatatatcccc
tgtagcataatagccaaagtgtaagtttggaaatttctccaccaaagatg
ataaagttaaattcaattaaaattaaaaggtccagaagctctgctctttg
atcaaaatgctgatagaaactaaagaggaaaagcttgcatggaaagccaa
tacttctaattgttataaagggctttatcctcctcatctgcccctcatgc
tgccttgtaaggaaatacaatagatttgggataacttgagaaatgcttct
gattcaaaggaaaaagcagacttcatgtgttttctataaaacagagattt
aagttctagtccaagaggataaaaatatttgtgaaagaaaaatgtaactt
taattactgaaatcaaaggaatcacacaacagagagaatgtttttcctaa
aagtggatatttaaaaatggatgtattttttttccctgccaatttcccaa
tttctaaaagtcatttagtgattgttcagaaatgataaccacacgtggct
gaatagtgtctgaggtcaggcgcacttctttctaaagaaccccagaacat
ttccaaatgtttactccatacacagactcatgaagcaggcagaagaaagg
aggctttttttttttttttaataaaagcctcccagagagtaatctttgaa
agcatagcttaagattttttcagatacgagaagcacatagcgccttttaa
aacgggtatggtgaccctgatttgctgaaatcttttttttttgtctgtac
aaaggtcagagaaaaccccaggttcgatcattaaacagcctgggcaaggt
gtacttaaagctgacgtactgactga
gaattctccatctgaaagacctttctcttctgtgcaggtttgtgtatagc
tttgcaggaagcataaagggggtaggtaggaaacggtctggaggctcttt
tctgagtgcccactgtatcacaacagcagaacgttcagggcgattagcaa
agggctttgtggaagcctcagacagaaatccagggtgcctgtgagtgtat
ggacctgaatgtcctacataatcttatcttttcaatttccctgaatgttt
ataaacacgttgatggcagtgatagaaagagacaagctttcaatgaatca
cttgtgttatgacttcgctatcttcacattggagactggaaggttgatta
tctaaggttttgatacccatactcagaaacggcccaaatgctgttttgac
acttaagtgacagaaaataggcacttattttcaggcttaaactttccttt
tgttttcttaaatgagataacaagtaagatctaaatgtatttttaaaatt
ctctcatgtgctctaataccagttctataaaaatgtctattaactttaag
atagaaaaaaaaatccccatagaacctgggaatgccatctcacagaaatt
taaacaaaccaactgcaaattgctcactgcagtgcactgcagtctgtcat
tagttagaataagtagtttttaatttgtatcccttatgttcaaatcaaag
ctaactcaattagtaaaatgaccatgagtaaagaggctgatggctaatta
ccactgattatatcactacttactgattaatggcctcagtatgatagcca
ggaattctgataaaactcatccttgtatcttttaatcaactaaattgtgt
taatttcaacaatctgttctaatttaaggaagtccttatcctctatgaca
tgaaaccagtttgttattcagaggaaagcaaaacctacagatgcttagct
atgctgcctaagtggagttttccaagtcatattcattcctctttctgttt
gatgcgatgactcaagtttctcagtgagaagaaacctccccttggtggtc
atcttttggtctgcagcacccgaagtgttgcacttacctatcagcattaa
aatatatatatatggcttgtaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_56525911_56527046
seq2: B6Ng01-167N08.b_45_1170

seq1  GAATTCCATCATGTCTTCTAAAGTTTATGACATATTTCTTCCCTTCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCATGTCTTCTAAAGTTTATGACATATTTCTTCCCTTCTTCC  50

seq1  CCCCTCCCTCCCTTACTCCCTCCCTCTCTCTCTCCCTCCTTCCCTCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCTCCCTTACTCCCTCCCTCTCTCTCTCCCTCCTTCCCTCCCTC  100

seq1  CCTTCCTTTCTTCCTTCCTTTCTTCTCCCCCTCCCTTCCTCCACTCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTTCTTCCTTCCTTTCTTCTCCCCCTCCCTTCCTCCACTCTTTG  150

seq1  CTCCCACTCTTCCTTCTTTCCTTCCTCCACTCTATACCCTCTCACCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTCTTCCTTCTTTCCTTCCTCCACTCTATACCCTCTCACCAAGA  200

seq1  TACTATCAATAGACTAATTTTGAATTTATGGTATTACTTTACCTTTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCAATAGACTAATTTTGAATTTATGGTATTACTTTACCTTTTAGT  250

seq1  ACCTAGCCACCCTCCCCCCCATCTTAGTTTACACATTTCTATATATCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGCCACCCTCCCCCCCATCTTAGTTTACACATTTCTATATATCCCC  300

seq1  TGTAGCATAATAGCCAAAGTGTAAGTTTGGAAATTTCTCCACCAAAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCATAATAGCCAAAGTGTAAGTTTGGAAATTTCTCCACCAAAGATG  350

seq1  ATAAAGTTAAATTCAATTAAAATTAAAAGGTCCAGAAGCTCTGCTCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTAAATTCAATTAAAATTAAAAGGTCCAGAAGCTCTGCTCTTTG  400

seq1  ATCAAAATGCTGATAGAAACTAAAGAGGAAAAGCTTGCATGGAAAGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATGCTGATAGAAACTAAAGAGGAAAAGCTTGCATGGAAAGCCAA  450

seq1  TACTTCTAATTGTTATAAAGGGCTTTATCCTCCTCATCTGCCCCTCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTAATTGTTATAAAGGGCTTTATCCTCCTCATCTGCCCCTCATGC  500

seq1  TGCCTTGTAAGGAAATACAATAGATTTGGGATAACTTGAGAAATGCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTAAGGAAATACAATAGATTTGGGATAACTTGAGAAATGCTTCT  550

seq1  GATTCAAAGGAAAAAGCAGACTTCATGTGTTTTCTATAAAACAGAGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAAGGAAAAAGCAGACTTCATGTGTTTTCTATAAAACAGAGATTT  600

seq1  AAGTTCTAGTCCAAGAGGATAAAAATATTTGTGAAAGAAAAATGTAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTAGTCCAAGAGGATAAAAATATTTGTGAAAGAAAAATGTAACTT  650

seq1  TAATTACTGAAATCAAAGGAATCACACAACAGAGAGAATGTTTTTCCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACTGAAATCAAAGGAATCACACAACAGAGAGAATGTTTTTCCTAA  700

seq1  AAGTGGATATTTAAAAATGGATGTATTTTTTTTCCCTGCCAATTTCCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGATATTTAAAAATGGATGTATTTTTTTTCCCTGCCAATTTCCCAA  750

seq1  TTTCTAAAAGTCATTTAGTGATTGTTCAGAAATGATAACCACACGTGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAAGTCATTTAGTGATTGTTCAGAAATGATAACCACACGTGGCT  800

seq1  GAATAGTGTCTGAGGTCAGGCGCACTTCTTTCTAAAGAACCCCAGAACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTGTCTGAGGTCAGGCGCACTTCTTTCTAAAGAACCCCAGAACAT  850

seq1  TTCCAAATGTTTACTCCATACACAGACTCATGAAGCAGGCAGAAGAAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATGTTTACTCCATACACAGACTCATGAAGCAGGCAGAAGAAAGG  900

seq1  AGGC-TTTTTTTTTTTTTTAAT-AAAGCCTCCCAGAGAGTAATC-TTGAA  947
      |||| ||||||||||||||||| ||||||||||||||||||||| |||||
seq2  AGGCTTTTTTTTTTTTTTTAATAAAAGCCTCCCAGAGAGTAATCTTTGAA  950

seq1  AGCATAGC-TAAGA-TTTTTCAGATAAGGGAGAAGCACATAGCGCCTTTT  995
      |||||||| ||||| |||||||||||   |||||||||||||||||||||
seq2  AGCATAGCTTAAGATTTTTTCAGATA--CGAGAAGCACATAGCGCCTTTT  998

seq1  AAAAGGGGTTATGGTGACCCTGATTTTGCTGAAATCTTTTTTTTTTTGTC  1045
      |||| ||| |||||||||||||| |||||||||||| |||||||||||||
seq2  AAAACGGG-TATGGTGACCCTGA-TTTGCTGAAATC-TTTTTTTTTTGTC  1045

seq1  TGTACAAAGGTCCAGGAGACACCCCCAGGGGTTCGAATTCATTAAACAAG  1095
      ||||||||||||   |||| | |||||  |||||||  ||||||||||  
seq2  TGTACAAAGGTC--AGAGAAAACCCCA--GGTTCGA--TCATTAAACAGC  1089

seq1  CTGGGCAAGGTGTACCTTAAAAGCTGACGTTAACTGACTGA  1136
      |||||||||||||||  | |||||||||||  |||||||||
seq2  CTGGGCAAGGTGTAC--TTAAAGCTGACGT--ACTGACTGA  1126

seq1: chr10_56639571_56640706
seq2: B6Ng01-167N08.g_68_1192 (reverse)

seq1  TCTTTAC-AGCAATATATATATATATATTTAATTGCTTGATAGGTAAGTG  49
      ||||||| ||| ||||||||||||   ||||| ||| |||||||||||||
seq2  TCTTTACAAGCCATATATATATAT---TTTAA-TGC-TGATAGGTAAGTG  45

seq1  CAACACTTTTGGGTTGCTGCAAGAACATAAAAGATGACCA-CAAGGGGAG  98
      ||||||  || || |||||| ||| |  |||||||||||| |||||||||
seq2  CAACAC--TTCGGGTGCTGC-AGACC--AAAAGATGACCACCAAGGGGAG  90

seq1  GTGTCTTCTCACTGAGAAACTTGAGTCATCGCATCAAACAGGAAAGAAGG  148
      || ||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  GTTTCTTCTCACTGAGAAACTTGAGTCATCGCATCAAACA-GAAAG-AGG  138

seq1  AATGAATATGACTTGGAAAACT-CACTTAAGGCAGCATAGCTAAGCATCT  197
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  AATGAATATGACTTGGAAAACTCCACTT-AGGCAGCATAGCTAAGCATCT  187

seq1  GTAGGTTTTGCTTTCCTCTGAATAACAAACTGGTTTCATTGTCATAGAGG  247
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTAGGTTTTGCTTTCCTCTGAATAACAAACTGGTTTCA-TGTCATAGAGG  236

seq1  ATAAGGACTTCCTTAAATTAGAACAGATTGTTGAAATTAACACAATTTAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGACTTCCTTAAATTAGAACAGATTGTTGAAATTAACACAATTTAG  286

seq1  TTGATTAAAAGATACAAGGATGAGTTTTATCAGAATTCCTGGCTATCATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAAAAGATACAAGGATGAGTTTTATCAGAATTCCTGGCTATCATA  336

seq1  CTGAGGCCATTAATCAGTAAGTAGTGATATAATCAGTGGTAATTAGCCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCCATTAATCAGTAAGTAGTGATATAATCAGTGGTAATTAGCCAT  386

seq1  CAGCCTCTTTACTCATGGTCATTTTACTAATTGAGTTAGCTTTGATTTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTTTACTCATGGTCATTTTACTAATTGAGTTAGCTTTGATTTGA  436

seq1  ACATAAGGGATACAAATTAAAAACTACTTATTCTAACTAATGACAGACTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGGGATACAAATTAAAAACTACTTATTCTAACTAATGACAGACTG  486

seq1  CAGTGCACTGCAGTGAGCAATTTGCAGTTGGTTTGTTTAAATTTCTGTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCACTGCAGTGAGCAATTTGCAGTTGGTTTGTTTAAATTTCTGTGA  536

seq1  GATGGCATTCCCAGGTTCTATGGGGATTTTTTTTTCTATCTTAAAGTTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCATTCCCAGGTTCTATGGGGATTTTTTTTTCTATCTTAAAGTTAA  586

seq1  TAGACATTTTTATAGAACTGGTATTAGAGCACATGAGAGAATTTTAAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATTTTTATAGAACTGGTATTAGAGCACATGAGAGAATTTTAAAAA  636

seq1  TACATTTAGATCTTACTTGTTATCTCATTTAAGAAAACAAAAGGAAAGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTAGATCTTACTTGTTATCTCATTTAAGAAAACAAAAGGAAAGTT  686

seq1  TAAGCCTGAAAATAAGTGCCTATTTTCTGTCACTTAAGTGTCAAAACAGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTGAAAATAAGTGCCTATTTTCTGTCACTTAAGTGTCAAAACAGC  736

seq1  ATTTGGGCCGTTTCTGAGTATGGGTATCAAAACCTTAGATAATCAACCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGCCGTTTCTGAGTATGGGTATCAAAACCTTAGATAATCAACCTT  786

seq1  CCAGTCTCCAATGTGAAGATAGCGAAGTCATAACACAAGTGATTCATTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTCCAATGTGAAGATAGCGAAGTCATAACACAAGTGATTCATTGA  836

seq1  AAGCTTGTCTCTTTCTATCACTGCCATCAACGTGTTTATAAACATTCAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGTCTCTTTCTATCACTGCCATCAACGTGTTTATAAACATTCAGG  886

seq1  GAAATTGAAAAGATAAGATTATGTAGGACATTCAGGTCCATACACTCACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGAAAAGATAAGATTATGTAGGACATTCAGGTCCATACACTCACA  936

seq1  GGCACCCTGGATTTCTGTCTGAGGCTTCCACAAAGCCCTTTGCTAATCGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCCTGGATTTCTGTCTGAGGCTTCCACAAAGCCCTTTGCTAATCGC  986

seq1  CCTGAACGTTCTGCTGTTGTGATACAGTGGGCACTCAGAAAAGAGCCTCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACGTTCTGCTGTTGTGATACAGTGGGCACTCAGAAAAGAGCCTCC  1036

seq1  AGACCGTTTCCTACCTACCCCCTTTATGCTTCCTGCAAAGCTATACACAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGTTTCCTACCTACCCCCTTTATGCTTCCTGCAAAGCTATACACAA  1086

seq1  ACCTGCACAGAAGAGAAAGGTCTTTCAGATGGAGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCACAGAAGAGAAAGGTCTTTCAGATGGAGAATTC  1125