BAC Information

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BAC

Clone NameB6Ng01-169A04
Chromosome12 (Build37)10 (Build37)
Map Location 80,323,596 - 80,324,09015,491,505 - 15,492,666
singlet/doubletsingletsinglet
Overlap geneRdh12
Upstream geneGphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11
Downstream geneZfyve26, Rad51l1, LOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169A04.bB6Ng01-169A04.g
ACCDH960100DH960101
length1,2061,131
definitionDH960100|Mus musculus domesticus DNA, BAC clone: B6Ng01-169A04, 5' end.DH960101|Mus musculus domesticus DNA, BAC clone: B6Ng01-169A04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,323,596 - 80,324,090)(15,491,505 - 15,492,666)
sequence
gaattcagaaaatcaaataaccccattaaaaaatggggctcagaactgaa
caaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaa
aatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctg
agattccacctcacaccagtcagaatggctaagatcaaaaattcaggtga
cagcagatgctggcgaggatgtggagaaagaggaacactcctccattgtt
ggtgggattgcaggtttgtacaaccactctggaaatccgtctggcggttc
ctcagaaaattggacatagtactaccagaggatccagcaatacctctcct
gggcatatatccagaagatgccccaactggtaagaaggacacatgctcca
ctatgttcatagcagccttatttataatagccagaagctggaaagaaccc
agatgcccctcaacagaggaatggatacagaaaatgtggtacatctacac
aatggagtactactcagctattaaaaagaatgaatttatgaaattcctag
ccaaatggatggacctggagggcatcatcctgagtgaggtaacacattca
caaaggaattcacacaatatgtactcactgataagtggatattagcccaa
aacctaggatacccaagatataagatacaatttcctaaacacatgaaact
caagaaaaatgaagactgaagtgtggacactatgcccctccttagaagtg
ggaacaaaacacccttggaaggagttacagagacaaagtttggagctgag
atgaaaggatggaccatgtagagtctgccttatccagggatccaccccat
aatcagcatccaaacgctgacaccattgcatacactagcaagattttatc
gaaaggacccagatgtagctgtctcttgtgagactatgccggggcctagc
aaacacagaagtggatgctcacagtcagctaatggatggatcacaggctc
ccatggaggagctagagaagtacccaagagctaaaggatctgcaacctat
agcggaacaacataatgaactaccagtatccagagctcttgactctagct
gcatatgtatcaaaaaatggcttagtccgccatcactgaaagaagagtcc
attggaaccccaactttattgtctcagttagttagccagcaaagagaatg
gtttgg
gaattcagaaggctaaagaaaaaaaaaaaaagcctgagtatggaatacag
agaatgtatgaagatcagaaaggagaagctgagactccaaggactgcaag
cctggagactcagacctctacagactgtactctggccactggccattggt
gctctgactagtagttatcagcttcagccgtgagctcccaacaagtaagt
gactttatgagcttggaacagtaagcatgtgcctctcaggtattaggtct
gaaatcctctggattgtggagcttcagcccatgaaggactcagaaccatc
aatactaaaaagtctgtgacttttctatgatttatgactggatagtataa
caactccccacaaactgtagtgcatggactgaaagctgctctaggttttg
tatgctttgcccatgtaaaagactacacagtgaatctgattggtttgttt
agcttttgtgtctccactaaattttatagatgcaagatgtctacacctat
aacaatagaagtataattacatgagatgaaagcatgaagtaaacaacagg
aaaaaaatgaaaagtatctagtttagtgctacagtgcagaatacttcctc
atgcatcacctgttatcaaaaataaaacacataattaaggacattaagaa
acttattcaaggataccaaatatgcaatagagaagatacacagcttcata
tttttggatatagtgatgattcacagatacaaatatatataatatatata
tatacacacacacacacaaaataaaacaaaacaaaacagaggtttgcaaa
taaagagttcactttaagccaggctctcacttttagtcccaacacttggg
aggcagggacaggcaaatttctgagttcgaagtcatcctgtctacatagt
aaattccaggatggctagggctacacagagaaaaactgtctcaaaaaaaa
aaaaaaaaaaagaaagaagaaagaaaaagaaaaaagagtaagttcacttc
ataaaccaatagaagctgttttacttatactaggctaattctattatgtg
cacgtttagtagtggataagatttatcattcctgagttaaataaagaaca
aaatttgatctgatctgttcaatgctacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_80323596_80324090
seq2: B6Ng01-169A04.b_1119_1253 (reverse)

seq1  CCAAACCATTCTCTTTACCTCAATTTTTAGAGAAATAAAGATTTATATTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTCATTGCCTGGTGTCTTTTCTCAGGGAGACATGGGAGAGAGAAAATC  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGTCTGTTAGTCCAGTGAGATATGTGTCCCTCTACTCAGCCACTCACCCG  150
                                                        
seq2  --------------------------------------------------  0

seq1  AACATCCAGAACTTTCTCACAATACTGTGTCTGGGCACAGAGTAAGCTGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCAGGTTAGGTGTTCAGTCAGGTCTGTCTGTCTGTCTGTCTCCTTCCTCT  250
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTCTCTCTCTCAACAACTTTTATTAGGTATTTTTTTCATTTACATTTC  300
                                                        
seq2  --------------------------------------------------  0

seq1  AGATGCTATCCTGAAAGTCCCCTATATATCCCCCCCCGCCCTGCTCCCCA  350
                                                     |||
seq2  -----------------------------------------------CCA  3

seq1  ACTCCCCCCTTCCTGGCCTTGGTGTTCCCCTGTACTAGGGCATATAAAGT  400
      |     || |||    | ||| ||     ||  |||  | || |||||||
seq2  A----ACCATTC---TCTTTGCTGGCTAACT-AACTGAGACA-ATAAAGT  44

seq1  TTGCAAGACCAAGGAACCTCTCTTCCCAATGATGGCCGAAGAGGCCATCT  450
      | |     | | |||  ||||  |  || ||||||| ||  | ||||| |
seq2  TGGGGTTCCAATGGA--CTCTTCTTTCAGTGATGGCGGACTAAGCCATTT  92

seq1  TCTGCTACATATGCAGCTAGAGACACGAGCTCTGAGGGTACTGGT  495
      | || ||||||||||||||||| || |||||||  || |||||||
seq2  TTTGATACATATGCAGCTAGAGTCAAGAGCTCT--GGATACTGGT  135

seq1: chr10_15491505_15492666
seq2: B6Ng01-169A04.g_67_1197 (reverse)

seq1  AAAGTAGACCACTTGAACAAGTCTAAGAATCAAATATTTTGTCTTTTATT  50
      |||||||  || |||||||  ||  || |||||  |||||||  ||||||
seq2  AAAGTAG--CA-TTGAACAGATC--AG-ATCAA--ATTTTGTTCTTTATT  42

seq1  ATACTCAGGAATATGTAATAAATCTCTATCCAACTACTAAACGTTGCCAC  100
        |||||||||    | |||||||| ||||| ||||||||||||   |||
seq2  TAACTCAGGAA----TGATAAATCT-TATCC-ACTACTAAACGT--GCAC  84

seq1  ATAATAGAATTTAGCCCTAGGTATAAGTAAAACAGCTTCTATGTGGTTTA  150
      ||||||||| |||| |||| |||||||||||||||||||||| |||||| 
seq2  ATAATAGAA-TTAG-CCTA-GTATAAGTAAAACAGCTTCTAT-TGGTTT-  129

seq1  ATGAAGTGAACTTTAACTCTTTTTTTTTCTTTTTTCTTTCTTTCTTTCTT  200
      |||||||||||||  ||||||||||     |||||||||| |||||||  
seq2  ATGAAGTGAACTT--ACTCTTTTTT----CTTTTTCTTTC-TTCTTTC--  170

seq1  TTTTTTTTTTTTTTTTTTTGAGACAGTTTTTCTCTGTGTAGCCCTAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTGAGACAGTTTTTCTCTGTGTAGCCCTAGCCA  220

seq1  TCCTGGAATTTACTATGTAGACCAGGATGACTTCGAACTCAGAAATTTGC  300
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCCTGGAATTTACTATGTAGA-CAGGATGACTTCGAACTCAGAAATTTGC  269

seq1  CTGTCCCTGCCTCCCAAGTGTTGGGACTAAAAGTGAGAGCCTGGCTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTGCCTCCCAAGTGTTGGGACTAAAAGTGAGAGCCTGGCTTAAA  319

seq1  GTGAACTCTTTATTTGCAAACCTCTGTTTTGTTTTGTTTTATTTTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTCTTTATTTGCAAACCTCTGTTTTGTTTTGTTTTATTTTGTGTG  369

seq1  TGTGTGTGTATATATATATATTATATATATTTGTATCTGTGAATCATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATATATATATATTATATATATTTGTATCTGTGAATCATCAC  419

seq1  TATATCCAAAAATATGAAGCTGTGTATCTTCTCTATTGCATATTTGGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCAAAAATATGAAGCTGTGTATCTTCTCTATTGCATATTTGGTAT  469

seq1  CCTTGAATAAGTTTCTTAATGTCCTTAATTATGTGTTTTATTTTTGATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAATAAGTTTCTTAATGTCCTTAATTATGTGTTTTATTTTTGATAA  519

seq1  CAGGTGATGCATGAGGAAGTATTCTGCACTGTAGCACTAAACTAGATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGATGCATGAGGAAGTATTCTGCACTGTAGCACTAAACTAGATACT  569

seq1  TTTCATTTTTTTCCTGTTGTTTACTTCATGCTTTCATCTCATGTAATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTTTTCCTGTTGTTTACTTCATGCTTTCATCTCATGTAATTAT  619

seq1  ACTTCTATTGTTATAGGTGTAGACATCTTGCATCTATAAAATTTAGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTATTGTTATAGGTGTAGACATCTTGCATCTATAAAATTTAGTGGA  669

seq1  GACACAAAAGCTAAACAAACCAATCAGATTCACTGTGTAGTCTTTTACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAAAGCTAAACAAACCAATCAGATTCACTGTGTAGTCTTTTACAT  719

seq1  GGGCAAAGCATACAAAACCTAGAGCAGCTTTCAGTCCATGCACTACAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGCATACAAAACCTAGAGCAGCTTTCAGTCCATGCACTACAGTT  769

seq1  TGTGGGGAGTTGTTATACTATCCAGTCATAAATCATAGAAAAGTCACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGAGTTGTTATACTATCCAGTCATAAATCATAGAAAAGTCACAGA  819

seq1  CTTTTTAGTATTGATGGTTCTGAGTCCTTCATGGGCTGAAGCTCCACAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGTATTGATGGTTCTGAGTCCTTCATGGGCTGAAGCTCCACAAT  869

seq1  CCAGAGGATTTCAGACCTAATACCTGAGAGGCACATGCTTACTGTTCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGATTTCAGACCTAATACCTGAGAGGCACATGCTTACTGTTCCAA  919

seq1  GCTCATAAAGTCACTTACTTGTTGGGAGCTCACGGCTGAAGCTGATAACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAAAGTCACTTACTTGTTGGGAGCTCACGGCTGAAGCTGATAACT  969

seq1  ACTAGTCAGAGCACCAATGGCCAGTGGCCAGAGTACAGTCTGTAGAGGTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTCAGAGCACCAATGGCCAGTGGCCAGAGTACAGTCTGTAGAGGTC  1019

seq1  TGAGTCTCCAGGCTTGCAGTCCTTGGAGTCTCAGCTTCTCCTTTCTGATC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTCCAGGCTTGCAGTCCTTGGAGTCTCAGCTTCTCCTTTCTGATC  1069

seq1  TTCATACATTCTCTGTATTCCATACTCAGGCTTTTTTTTTTTTTCTTTAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACATTCTCTGTATTCCATACTCAGGCTTTTTTTTTTTTTCTTTAG  1119

seq1  CCTTCTGAATTC  1162
      ||||||||||||
seq2  CCTTCTGAATTC  1131