BAC Information

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BAC

Clone NameB6Ng01-169J01
Chromosome10 (Build37)
Map Location 102,067,987 - 102,221,424
singlet/doubletdoublet
Overlap genenone
Upstream geneMgat4c, LOC667652, Nts, Pamci
Downstream geneLOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169J01.bB6Ng01-169J01.g
ACCDH960511DH960512
length1,179755
definitionDH960511|Mus musculus domesticus DNA, BAC clone: B6Ng01-169J01, 5' end.DH960512|Mus musculus domesticus DNA, BAC clone: B6Ng01-169J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,220,225 - 102,221,424)(102,067,987 - 102,068,741)
sequence
gaattccatgagctgagtggccatcctgtatagcctaaacagaaaactca
gggttaagtttgggattctacctccaaattatgatggagaactactgaaa
aaaataaccagtttgtaccccagccctccatattcacataggcagacaat
tatgcatgtatacataaaacactcacctccccaccccaccccaccccaca
gatatggtcgggaatttatggagaagaccaaaatttcaatatattttctt
catctctcttacttcaaaaattcagttttatatgtcaaatggaatatagt
catttagttagcacatgttaatccaaaatcagttagtataatcagtatgt
tataaagtaccaaaacaaattgtaatccagatgggaagaaagacatgcaa
acatacatttgtggtatttctgtctcatttaactatgtaattgtggctga
gcattggaaatgctttcagaatcatactctatgaaggcaatattaaggat
gtggagttgacactgggaatgtagttctgcataacgttcttcatggagaa
gctttgtgaaacattgacatttcccctggagaataaacagcagaatgttt
caaaaggcaataccctcaaacatataacgcagtgatatttcaactgggga
cttccattccatatgcctagaacactcagccatcttactacattttgggg
aagctcaaaagttcaacacaaaagacacagtaaatgtagtagttagttat
acatatctgtaaccaaaatacccaataaaaattacttaagaaaataaaat
attttagctcatggtttgtaggattactatctatcacaacaggaaaggta
tgacacaccaactcctgtgtctgtgagaacatgcaacagagcattctcac
atcacagcagactaggaagcaaggagtgattagaactaggtagtagttct
aacctttaaagacctacccataatcctaatttacattaggtagttcccac
ctccaatattaacatgactcccaaaatatagccatgctgaacaacaagat
ttacatatggaagattgggggacacttgcgatatgatgacataaaattac
atcaagcaaagacacgtaagggagtagaactggaacttgaatgaaggaga
agcacttctgtggtaagaataggcttgtt
gaattctgggtttcgacaaatgtaaatatgcatttggtacattctgaaag
ctccctgcctcgcatattccctacccctatgcagcccctcttttctgcta
atttcgttcttgtattggtttcttttcattttgtttttgttcctctgttc
ttgaccagcattgtctgtgcagtcatcagattgaaaaccaaccactgaaa
tctgctgaattcacccatgaatctatcaatagccaatatttttgcaataa
ggggtgtatacaattgcaaaacacatgaaactcaagaataaggaagacca
aagagtggatacctcgttcctccttagaatggggaacaaaatacccatgg
aaggagttacagagacaaagtttggagctgagatggaaggaaggaccatc
cagagactgtcccacctggggatccatcccataaacaaccaccaaaccca
gacactattgcatataccagcaaggatttgctgacaggaccctgatatag
ctgtctcttgtgagtctatgccagtgcctggcaaatacagaagtattgct
cacagtcatctattggatggaacacaggctccccaatagaggagctagag
aaagtacccaaggagctgaaggggtctgcaaccctataggaggaacaaca
atatgaaccaactagtaccctcagagctcatttctctagctgcatatgta
ccagaagatgacctaagaggccatcattgggaggaggggcccttggtctt
gcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_102220225_102221424
seq2: B6Ng01-169J01.b_43_1221 (reverse)

seq1  AACAAGCC-ATCTTTACCACAGAAGTGCTTTCTCTCTTTCATCTCCCTTT  49
      |||||||| ||  ||||||||||||||||   |||| ||||| ||   | 
seq2  AACAAGCCTATTCTTACCACAGAAGTGCT---TCTCCTTCAT-TCAAGT-  45

seq1  GTATCCAGGTTCTACTCCC-TACGTTGTCTTTTGGCTTGATGTAATTTTT  98
         |||| ||||||||||| |||| |||||||  ||||||||||| ||||
seq2  ---TCCA-GTTCTACTCCCTTACG-TGTCTTT--GCTTGATGTAA-TTTT  87

seq1  ATGGTCATCATTTAATTCGCAAGTGT-CCCCAATCTTTCCATATGTTAAA  147
      || ||||||||     |||||||||| |||||||| ||||||||| ||||
seq2  AT-GTCATCAT----ATCGCAAGTGTCCCCCAATC-TTCCATATG-TAAA  130

seq1  TCTTGTTGTTCAGCATTGGCTATATTTTGGGAGTTCATGTTAATATTTGG  197
      ||||||||||||||| ||||||||||||||||| ||||||||||| ||||
seq2  TCTTGTTGTTCAGCA-TGGCTATATTTTGGGAG-TCATGTTAATA-TTGG  177

seq1  AGGTGGGAACTACCTAATGTAAATTAGGGATTATGGGTAGGTCTTTAAAG  247
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGTGGGAACTACCTAATGTAAATTA-GGATTATGGGTAGGTCTTTAAAG  226

seq1  GTTAGAACTACTACCTAGTTCTAATCACTCCTTGCTTCCTAGTCTGCTGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAACTACTACCTAGTTCTAATCACTCCTTGCTTCCTAGTCTGCTGT  276

seq1  GATGTGAGAATGCTCTGTTGCATGTTCTCACAGACACAGGAGTTGGTGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAGAATGCTCTGTTGCATGTTCTCACAGACACAGGAGTTGGTGTG  326

seq1  TCATACCTTTCCTGTTGTGATAGATAGTAATCCTACAAACCATGAGCTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCTTTCCTGTTGTGATAGATAGTAATCCTACAAACCATGAGCTAA  376

seq1  AATATTTTATTTTCTTAAGTAATTTTTATTGGGTATTTTGGTTACAGATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTATTTTCTTAAGTAATTTTTATTGGGTATTTTGGTTACAGATA  426

seq1  TGTATAACTAACTACTACATTTACTGTGTCTTTTGTGTTGAACTTTTGAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAACTAACTACTACATTTACTGTGTCTTTTGTGTTGAACTTTTGAG  476

seq1  CTTCCCCAAAATGTAGTAAGATGGCTGAGTGTTCTAGGCATATGGAATGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCAAAATGTAGTAAGATGGCTGAGTGTTCTAGGCATATGGAATGG  526

seq1  AAGTCCCCAGTTGAAATATCACTGCGTTATATGTTTGAGGGTATTGCCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCCAGTTGAAATATCACTGCGTTATATGTTTGAGGGTATTGCCTT  576

seq1  TTGAAACATTCTGCTGTTTATTCTCCAGGGGAAATGTCAATGTTTCACAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACATTCTGCTGTTTATTCTCCAGGGGAAATGTCAATGTTTCACAA  626

seq1  AGCTTCTCCATGAAGAACGTTATGCAGAACTACATTCCCAGTGTCAACTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCCATGAAGAACGTTATGCAGAACTACATTCCCAGTGTCAACTC  676

seq1  CACATCCTTAATATTGCCTTCATAGAGTATGATTCTGAAAGCATTTCCAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCTTAATATTGCCTTCATAGAGTATGATTCTGAAAGCATTTCCAA  726

seq1  TGCTCAGCCACAATTACATAGTTAAATGAGACAGAAATACCACAAATGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCCACAATTACATAGTTAAATGAGACAGAAATACCACAAATGTA  776

seq1  TGTTTGCATGTCTTTCTTCCCATCTGGATTACAATTTGTTTTGGTACTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCATGTCTTTCTTCCCATCTGGATTACAATTTGTTTTGGTACTTT  826

seq1  ATAACATACTGATTATACTAACTGATTTTGGATTAACATGTGCTAACTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATACTGATTATACTAACTGATTTTGGATTAACATGTGCTAACTAA  876

seq1  ATGACTATATTCCATTTGACATATAAAACTGAATTTTTGAAGTAAGAGAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTATATTCCATTTGACATATAAAACTGAATTTTTGAAGTAAGAGAG  926

seq1  ATGAAGAAAATATATTGAAATTTTGGTCTTCTCCATAAATTCCCGACCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAAATATATTGAAATTTTGGTCTTCTCCATAAATTCCCGACCAT  976

seq1  ATCTGTGGGGTGGGGTGGGGTGGGGAGGTGAGTGTTTTATGTATACATGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGGGGTGGGGTGGGGTGGGGAGGTGAGTGTTTTATGTATACATGC  1026

seq1  ATAATTGTCTGCCTATGTGAATATGGAGGGCTGGGGTACAAACTGGTTAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGTCTGCCTATGTGAATATGGAGGGCTGGGGTACAAACTGGTTAT  1076

seq1  TTTTTTCAGTAGTTCTCCATCATAATTTGGAGGTAGAATCCCAAACTTAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGTAGTTCTCCATCATAATTTGGAGGTAGAATCCCAAACTTAA  1126

seq1  CCCTGAGTTTTCTGTTTAGGCTATACAGGATGGCCACTCAGCTCATGGAA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGTTTTCTGTTTAGGCTATACAGGATGGCCACTCAGCTCATGGAA  1176

seq1  TTC  1200
      |||
seq2  TTC  1179

seq1: chr10_102067987_102068741
seq2: B6Ng01-169J01.g_66_820

seq1  GAATTCTGGGTTTCGACAAATGTAAATATGCATTTGGTACATTCTGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGTTTCGACAAATGTAAATATGCATTTGGTACATTCTGAAAG  50

seq1  CTCCCTGCCTCGCATATTCCCTACCCCTATGCAGCCCCTCTTTTCTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGCCTCGCATATTCCCTACCCCTATGCAGCCCCTCTTTTCTGCTA  100

seq1  ATTTCGTTCTTGTATTGGTTTCTTTTCATTTTGTTTTTGTTCCTCTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGTTCTTGTATTGGTTTCTTTTCATTTTGTTTTTGTTCCTCTGTTC  150

seq1  TTGACCAGCATTGTCTGTGCAGTCATCAGATTGAAAACCAACCACTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCAGCATTGTCTGTGCAGTCATCAGATTGAAAACCAACCACTGAAA  200

seq1  TCTGCTGAATTCACCCATGAATCTATCAATAGCCAATATTTTTGCAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGAATTCACCCATGAATCTATCAATAGCCAATATTTTTGCAATAA  250

seq1  GGGGTGTATACAATTGCAAAACACATGAAACTCAAGAATAAGGAAGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTATACAATTGCAAAACACATGAAACTCAAGAATAAGGAAGACCA  300

seq1  AAGAGTGGATACCTCGTTCCTCCTTAGAATGGGGAACAAAATACCCATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGGATACCTCGTTCCTCCTTAGAATGGGGAACAAAATACCCATGG  350

seq1  AAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATGGAAGGAAGGACCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATGGAAGGAAGGACCATC  400

seq1  CAGAGACTGTCCCACCTGGGGATCCATCCCATAAACAACCACCAAACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTGTCCCACCTGGGGATCCATCCCATAAACAACCACCAAACCCA  450

seq1  GACACTATTGCATATACCAGCAAGGATTTGCTGACAGGACCCTGATATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTATTGCATATACCAGCAAGGATTTGCTGACAGGACCCTGATATAG  500

seq1  CTGTCTCTTGTGAGTCTATGCCAGTGCCTGGCAAATACAGAAGTATTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTTGTGAGTCTATGCCAGTGCCTGGCAAATACAGAAGTATTGCT  550

seq1  CACAGTCATCTATTGGATGGAACACAGGCTCCCCAATAGAGGAGCTAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCATCTATTGGATGGAACACAGGCTCCCCAATAGAGGAGCTAGAG  600

seq1  AAAGTACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGAGGAACAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGAGGAACAACA  650

seq1  ATATGAACCAACTAGTACCCTCAGAGCTCATTTCTCTAGCTGCATATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAACCAACTAGTACCCTCAGAGCTCATTTCTCTAGCTGCATATGTA  700

seq1  CCAGAAGATGACCTAAGAGGCCATCATTGGGAGGAGGGGCCCTTGGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGATGACCTAAGAGGCCATCATTGGGAGGAGGGGCCCTTGGTCTT  750

seq1  GCACA  755
      |||||
seq2  GCACA  755