BAC Information

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BAC

Clone NameB6Ng01-170C11
Chromosome10 (Build37)
Map Location 77,588,752 - 77,694,644
singlet/doubletdoublet
Overlap geneD10Jhu81e, Pwp2, Tmem1
Upstream geneCol18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl
Downstream geneAgpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170C11.bB6Ng01-170C11.g
ACCDH960939DH960940
length1,030928
definitionDH960939|Mus musculus domesticus DNA, BAC clone: B6Ng01-170C11, 5' end.DH960940|Mus musculus domesticus DNA, BAC clone: B6Ng01-170C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,588,752 - 77,589,787)(77,693,710 - 77,694,644)
sequence
gaattcagcatagtgacacactattggcttaaacaaacatcagcagaaaa
attacatgtacatgcagggtgtcagagttctgtgagttgttgactcagtt
aaggtagccctgttatgtcctcacattcctctttatctttaaggttaagc
tgttcccaggaatgttttaactacggggcatacccaggtttgtttttctt
ttttctcagccccaggcagcctctaggctcataaataaccagcaatttct
gagtactttttatgacttacaggtcttgaaatttcatctttctttcaatg
cctcagggtttaagggcactggctgttcttacagaggaccagtgttcaat
ccccagcacccacatgggagctcacaaccattgttaactccaattctaag
gagcgcaaacccttggcctccacaggcacagcacatacaatgtgcacaga
catacatgcaggctaaacgcccacacacataaaaatgaaaatgacgtgtt
tgggtgtcagattgacaaagggggggggggagctgggttgacgaatctca
ctgtcaatgagatttaagataatcatagaaccacatctctgggtgtctct
gtgagggctttttcagaaagatttaaagaggcaggaagacctacgctgag
tatgggtgataccatcctatgggcctgattctggattgaataacaaggag
aaaaggagttgaacaccagcctgttgtatgactggctgcttccctcccag
ctccaagctcccagaataatgcctcagactcgaaatatatttataaatac
ccaagtcatacagttaggctccttcctgactagctaataatttaaaacaa
cccatttacatttatctacattctgccacatggctggctacctctgctca
gatgccacgcatctgtgttcctcacatctctcttggcttaacctctgctc
tatttcagatcatttctgcctttgggatgccccaccttctactctctcca
ttctataagctatagtggtttaattgacag
gaattcaaggccagtctggtctacagagtgagttccaggacagccgggac
tgcacagagaaaccctgtctcgaaaaaccaaaacaaaaaagaaagaaaga
aagaaagaaagaaagaaagaaagagagaaagaggggtgggggaggggctg
gctgaactgcttccaaggcagaatctgtgagagtcatagacctttgtgga
ggaccccagttcaaccatgcagatgaagtgctcaggttcctgaaactggt
cacttattttaagataatattgcttaagaacatcaatatcttaaactata
aagtgtattttgcctgtatttatcttaaagccacataactggtttttctt
tgttcctgttgtaggtgctggagatcagaatttatttacctccatttatc
cgacactttcccagcagcttccaagagaaccaatggaatggagaaggtac
aggctctgtgttttggctggacttgtcctgtaattcaggagcttgagtga
ttgaataggtgctccagcagtagtgcctctctgttctggagtgcagactg
atcaacagtggcctcccctagcttatgggtctttctctttaaggctgttt
cattgttgtgattgtggtgctggggattgagtccagggcttcactttcct
aacctcttcatgttttgttttgttttttcttttgagttagaatcctgtta
tagttcaagctggacttgaacttgctatggagcccaggctggcctcaaac
ttgcattactcctgcctccacttgagtactacactagggttacaggctaa
accaccactcctgagtcttgattctgtgtgtgtgtgtgtgtgtgtgtatg
cgcgcgcgcgcgcgcgcgcaatgccccgtgtatgatcatgtgtgtacttc
gtttgacgaagaccgggtaccaccctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_77588752_77589787
seq2: B6Ng01-170C11.b_45_1074

seq1  GAATTCAGCATAGTGACACACTATTGGCTTATTCAAACATCAGCAGAAAA  50
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  GAATTCAGCATAGTGACACACTATTGGCTTAAACAAACATCAGCAGAAAA  50

seq1  ATTACATGTACATGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTACATGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGTT  100

seq1  AAGGTAGCCCTGTTATGTCCTCACATTCCTCTTTATCTTTAAGGTTAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGCCCTGTTATGTCCTCACATTCCTCTTTATCTTTAAGGTTAAGC  150

seq1  TGTTCCCAGGAATGTTTTAACTACGGGGCATACCCAGGTTTGTTTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCAGGAATGTTTTAACTACGGGGCATACCCAGGTTTGTTTTTCTT  200

seq1  TTTTCTCAGCCCCAGGCAGCCTCTAGGCTCATAAATAACCAGCAATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAGCCCCAGGCAGCCTCTAGGCTCATAAATAACCAGCAATTTCT  250

seq1  GAGTACTTTTTATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTTTTTATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCAATG  300

seq1  CCTCAGGGTTTAAGGGCACTGGCTGTTCTTACAGAGGACCAGTGTTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGGTTTAAGGGCACTGGCTGTTCTTACAGAGGACCAGTGTTCAAT  350

seq1  CCCCAGCACCCACATGGGAGCTCACAACCATTGTTAACTCCAATTCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCACCCACATGGGAGCTCACAACCATTGTTAACTCCAATTCTAAG  400

seq1  GAGCGCAAACCCTTGGCCTCCACAGGCACAGCACATACAATGTGCACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCAAACCCTTGGCCTCCACAGGCACAGCACATACAATGTGCACAGA  450

seq1  CATACATGCAGGCTAAACGCCCACACACATAAAAATGAAAATGACGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGCAGGCTAAACGCCCACACACATAAAAATGAAAATGACGTGTT  500

seq1  TGGGTGTCAGATTGACAAAGGGGGGGGGGGAGCTGGGTTGACGAATCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTCAGATTGACAAAGGGGGGGGGGGAGCTGGGTTGACGAATCTCA  550

seq1  CTGTCAATGAGATTTAAGATAATCATAGAACCACATCTCTGGGTGTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAATGAGATTTAAGATAATCATAGAACCACATCTCTGGGTGTCTCT  600

seq1  GTGAGGGCTTTTCCAGAAAGATTTAAAGAGGCAGGAAGACCTACGCTGAG  650
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGCTTTTTCAGAAAGATTTAAAGAGGCAGGAAGACCTACGCTGAG  650

seq1  TATGGGTGATACCATCCTATGGGCCTGATTCTGGATTGAATAACAAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTGATACCATCCTATGGGCCTGATTCTGGATTGAATAACAAGGAG  700

seq1  AAAAGGAGTTGAACACCAGCCTGTTGTATGACTGGCTGCTTCCCTCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGTTGAACACCAGCCTGTTGTATGACTGGCTGCTTCCCTCCCAG  750

seq1  CTCCAAGCTCCCAGAATAATGCCTCAGACTCGAAATATATTTATAAATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGCTCCCAGAATAATGCCTCAGACTCGAAATATATTTATAAATAC  800

seq1  CCAAGTCATACAGTTAGGCTCCTTCCCTGACTAGCTAATAATTTAAAACA  850
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCAAGTCATACAGTTAGGCTCCTT-CCTGACTAGCTAATAATTTAAAACA  849

seq1  ACCCATTTACATTTATCTACATTCTGCCACATGGCTGGCTACCTCTGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTACATTTATCTACATTCTGCCACATGGCTGGCTACCTCTGCTC  899

seq1  AGATGCCACGCATCTGTGTTCCTCACATCTCTCTTGGCTCTCAAGTCTGG  950
      ||||||||||||||||||||||||||||||||||||||| | |  ||| |
seq2  AGATGCCACGCATCTGTGTTCCTCACATCTCTCTTGGCT-TAACCTCT-G  947

seq1  CTCTATTTCAGAATCATTTCTGCCTTTGGGATGCCCCACCTTCTACTCTC  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTCAG-ATCATTTCTGCCTTTGGGATGCCCCACCTTCTACTCTC  996

seq1  TCCATTCCTATAAGCTATAGGTGTTTTAATTGACAG  1036
      |||||| |||||||||||| ||| ||||||||||||
seq2  TCCATT-CTATAAGCTATA-GTGGTTTAATTGACAG  1030

seq1: chr10_77693710_77694644
seq2: B6Ng01-170C11.g_68_995 (reverse)

seq1  GCAGGTGTGGTACCCAGTACTTACGTACAAACGTATGTACACACATGTTC  50
      ||||| ||||||||| || ||| ||| |||||| | ||||||||||| ||
seq2  GCAGG-GTGGTACCCGGT-CTT-CGT-CAAACG-AAGTACACACATGATC  45

seq1  ATACACGCGCGCACTCGCGCGCGCGCGCGCGCGCGCATACACACACACAC  100
      ||||||| | ||| | ||||||||||||||||||||||||||||||||||
seq2  ATACACG-GGGCA-TTGCGCGCGCGCGCGCGCGCGCATACACACACACAC  93

seq1  ACACACACACAGAATCAAGACTCAGGAGTGGTGGTTTAGCCTGTAACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAGAATCAAGACTCAGGAGTGGTGGTTTAGCCTGTAACCCT  143

seq1  AGTGTAGTACTCAAGTGGAGGCAGGAGTAATGCAAGTTTGAGGCCAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGTACTCAAGTGGAGGCAGGAGTAATGCAAGTTTGAGGCCAGCCT  193

seq1  GGGCTCCATAGCAAGTTCAAGTCCAGCTTGAACTATAACAGGATTCTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCATAGCAAGTTCAAGTCCAGCTTGAACTATAACAGGATTCTAAC  243

seq1  TCAAAAGAAAAAACAAAACAAAACATGAAGAGGTTAGGAAAGTGAAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGAAAAAACAAAACAAAACATGAAGAGGTTAGGAAAGTGAAGCCC  293

seq1  TGGACTCAATCCCCAGCACCACAATCACAACAATGAAACAGCCTTAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCAATCCCCAGCACCACAATCACAACAATGAAACAGCCTTAAAGA  343

seq1  GAAAGACCCATAAGCTAGGGGAGGCCACTGTTGATCAGTCTGCACTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACCCATAAGCTAGGGGAGGCCACTGTTGATCAGTCTGCACTCCAG  393

seq1  AACAGAGAGGCACTACTGCTGGAGCACCTATTCAATCACTCAAGCTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAGGCACTACTGCTGGAGCACCTATTCAATCACTCAAGCTCCTG  443

seq1  AATTACAGGACAAGTCCAGCCAAAACACAGAGCCTGTACCTTCTCCATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGGACAAGTCCAGCCAAAACACAGAGCCTGTACCTTCTCCATTC  493

seq1  CATTGGTTCTCTTGGAAGCTGCTGGGAAAGTGTCGGATAAATGGAGGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTTCTCTTGGAAGCTGCTGGGAAAGTGTCGGATAAATGGAGGTAA  543

seq1  ATAAATTCTGATCTCCAGCACCTACAACAGGAACAAAGAAAAACCAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCTGATCTCCAGCACCTACAACAGGAACAAAGAAAAACCAGTTA  593

seq1  TGTGGCTTTAAGATAAATACAGGCAAAATACACTTTATAGTTTAAGATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTTAAGATAAATACAGGCAAAATACACTTTATAGTTTAAGATAT  643

seq1  TGATGTTCTTAAGCAATATTATCTTAAAATAAGTGACCAGTTTCAGGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTCTTAAGCAATATTATCTTAAAATAAGTGACCAGTTTCAGGAAC  693

seq1  CTGAGCACTTCATCTGCATGGTTGAACTGGGGTCCTCCACAAAGGTCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACTTCATCTGCATGGTTGAACTGGGGTCCTCCACAAAGGTCTAT  743

seq1  GACTCTCACAGATTCTGCCTTGGAAGCAGTTCAGCCAGCCCCTCCCCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCACAGATTCTGCCTTGGAAGCAGTTCAGCCAGCCCCTCCCCCAC  793

seq1  CCCTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTT  843

seq1  TGTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGCAGTCCCGGCTGTCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGCAGTCCCGGCTGTCCTG  893

seq1  GAACTCACTCTGTAGACCAGACTGGCCTTGAATTC  935
      |||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGACCAGACTGGCCTTGAATTC  928