BAC Information

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BAC

Clone NameB6Ng01-172O21
Chromosome10 (Build37)
Map Location 115,880,715 - 116,014,322
singlet/doubletdoublet
Overlap geneKcnmb4, Cnot2
Upstream geneLgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik, Ptprb
Downstream geneLOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172O21.bB6Ng01-172O21.g
ACCGA001418GA001419
length1,1371,002
definitionB6Ng01-172O21.b B6Ng01-172O21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,880,715 - 115,881,863)(116,013,325 - 116,014,322)
sequence
gaattctttaagcctcaggttcctccgtgaggtaaatgcaactaatattt
acaaccactatagagaccgtgtcttcagtctagtgttctccttcctgccc
gcctttcactcaccctccatatccaacatgcattcagcattcacacagca
accgacacgggaaactcagctacttcctcaatatgaactcctgcttatgt
cagtcttcaggttgaaaataaagttggaaaaggcttcgcctgaccacata
ttgcctgtattacaaaaacaatgtctttagcatttattattattattgct
attattattattattattattattattattgcctgtagaactctaacccc
aaggctaccttacctgttcaggttgcaaccaacactgtctttccaatgta
cctaagatgccctgttttcgagccctggctgatgcagcacagcccctgcc
cccctccctcccatttcaaggtcttgcccttcttatccccaaccaatgac
atcacacttgactctgcctgacatctgttcccatcagtgaatacacattc
cttggcatcagagaaaccgccttattaagtcatcactgagttcaattgtt
gattcaccaaagatccactgagacacaggcactgggtcaggcatggagga
acaaagatagtgccgggcatgctctttaacgagcgcacagttgggctagg
gagccgggcacaggacacgcacaggacgtagatgtatgtgacggatgttt
gtcacaacgctgcggcctgggctgaccactggcgattctcctgtaattag
ccaatgatgcttttttattattactactactttcaagtttttattttatg
tatatgagtgtttagcctgtgtggctgtgcaccacttgaatgcctgctgc
cccagaggccagagagggcgctagatcccatggaacttgaatgacgggtt
gatgtgagctgccatatggttctgggaaccagccctgttcctctggaaac
aaacaacaacaacaacacaaaccagcagcggtctttacagctgagccacc
tcttccagcccagtgaggctcgctctgtgaagtctttatatttctctgga
tctttccgccatctgggcactcttgccaggcaatgcc
gaattcttgctgttttctgacaggtttttttttttttttttctgaaatga
agctgcagatacttggtatctaacttcagggaggaacgctgcattatgaa
gtgataaaatggtctgcgttgtctttacctttgggatgggcgcatggctt
atacaacatacaacatacaaatgaaaaaaactgaactgtgtagagaaata
caaagttttcctttggtagacacatttttatatatgatcaaactcagggt
ccaagaccatttagttaactgtttggaactcatttgctccttaagtctaa
acatttgcctttttattcataagcctgtttgcatgtgtggctctgggtgt
taagtgtcactttctctctgttacttggtaaacttatggcctatgtcagt
ttcttcatgaaatcgttcctgactcccccaacccccaatactcattactg
agtatgtcaccatggatcttaatttacatctcatctctcctccaccatga
tccctacaggtctgagtgtgagcaagactcttgtcttggttacatttaca
cactttctgtaatgtataggagttagagtctcaagaaataagcttcaagc
aaaccagttgctggcttagttgtttcttttcttttcttttttccgagaca
gggtttctctgtgtacattggctgtcctggaactcgctctgtagaccagg
ctggccctgaacttagaaatccacctgcctccctctgcctcccaagtgct
aggatcaaaggcatgcgccaccacgtccatttcttgaatctgttttttga
gttttacttttttattctttaagatttatttatttattttatgtatgtga
gtacactttcagctgaacagatggttgtgagccttcatgtggttgttgga
attgaattttaggatctctgcttgcctccagtcagctccgctcactcccg
tcaatcctgctctctcagttcctgctcacttctggctgaaggaccttatt
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_115880715_115881863
seq2: B6Ng01-172O21.b_45_1181

seq1  GAATTCTTTAAGCCTCAGGTTCCTCCGTGAGGTAAATGCAACTAATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAGCCTCAGGTTCCTCCGTGAGGTAAATGCAACTAATATTT  50

seq1  ACAACCACTATAGAGACCGTGTCTTCAGTCTAGTGTTCTCCTTCCTGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCACTATAGAGACCGTGTCTTCAGTCTAGTGTTCTCCTTCCTGCCC  100

seq1  GCCTTTCACTCACCCTCCATATCCAACATGCATTCAGCATTCACACAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCACTCACCCTCCATATCCAACATGCATTCAGCATTCACACAGCA  150

seq1  ACCGACACGGGAAACTCAGCTACTTCCTCAATATGAACTCCTGCTTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGACACGGGAAACTCAGCTACTTCCTCAATATGAACTCCTGCTTATGT  200

seq1  CAGTCTTCAGGTTGAAAATAAAGTTGGAAAAGGCTTCGCCTGACCACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCAGGTTGAAAATAAAGTTGGAAAAGGCTTCGCCTGACCACATA  250

seq1  TTGCCTGTATTACAAAAACAATGTCTTTAGCATTTATTATTATTATTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGTATTACAAAAACAATGTCTTTAGCATTTATTATTATTATTGCT  300

seq1  ATTATTATTATTATTATTATTATTATTATTGCCTGTAGAACTCTAACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTATTATTATTATTATTATTGCCTGTAGAACTCTAACCCC  350

seq1  AAGGCTACCTTACCTGTTCAGGTTGCAACCAACACTGTCTTTCCAATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTACCTTACCTGTTCAGGTTGCAACCAACACTGTCTTTCCAATGTA  400

seq1  CCTAAGATGCCCTGTTTTCGAGCCCTGGCTGATGCAGCACAGCCCCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGATGCCCTGTTTTCGAGCCCTGGCTGATGCAGCACAGCCCCTGCC  450

seq1  CCCCTCCCTCCCATTTCAAGGTCTTGCCCTTCTTATCCCCAACCAATGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCTCCCATTTCAAGGTCTTGCCCTTCTTATCCCCAACCAATGAC  500

seq1  ATCACACTTGACTCTGCCTGACATCTGTTCCCATCAGTGAATACACATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACTTGACTCTGCCTGACATCTGTTCCCATCAGTGAATACACATTC  550

seq1  CTTGGCATCAGAGAAACCGCCTTATTAAGTCATCACTGAGTTCAATTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCATCAGAGAAACCGCCTTATTAAGTCATCACTGAGTTCAATTGTT  600

seq1  GATTCACCAAAGATCCACTGAGACACAGGCACTGGGTCAGGCATGGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACCAAAGATCCACTGAGACACAGGCACTGGGTCAGGCATGGAGGA  650

seq1  ACAAAGATAGTGCCGGGCATGCTCTTTAACGAGCGCACAGTTGGGCTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATAGTGCCGGGCATGCTCTTTAACGAGCGCACAGTTGGGCTAGG  700

seq1  GAGCCGGGCACAGGACACGCACAGGACGTAGATGTATGTGACGGATGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGGGCACAGGACACGCACAGGACGTAGATGTATGTGACGGATGTTT  750

seq1  GTCACAACGCTGCGGCCTGGGCTGACCACTGGCGATTCTCCTGTAATTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAACGCTGCGGCCTGGGCTGACCACTGGCGATTCTCCTGTAATTAG  800

seq1  CCAATGATGCTTTTTTATTATTACTACTACTTTCAAGTTTTTATTTTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGATGCTTTTTTATTATTACTACTACTTTCAAGTTTTTATTTTATG  850

seq1  TATATGAGTGTTTAGCCTGTGTGGCTGTGCACCACTTGAATGCCTGCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAGTGTTTAGCCTGTGTGGCTGTGCACCACTTGAATGCCTGCTGC  900

seq1  CCCAGAGGCCAGAAGAGGGCGCTAGATCCCATGGAACTTGAATGACGGGT  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGCCAG-AGAGGGCGCTAGATCCCATGGAACTTGAATGACGGGT  949

seq1  GATTGTGAGCTGCCATATGGGTTCTGGGAACCAAGGCCCTG-TCCTCTGG  999
         ||||||||||||||| ||||||||||||||  |||||| ||||||||
seq2  TGATGTGAGCTGCCATAT-GGTTCTGGGAACCA--GCCCTGTTCCTCTGG  996

seq1  AAACAAACAAACAAACAAACAAACAAACAAAACCAGCCAGCGGTCTTAAC  1049
      ||||||||     |||||   |||||   ||||||| |||||||||| ||
seq2  AAACAAAC-----AACAA--CAACAACACAAACCAG-CAGCGGTCTTTAC  1038

seq1  AGCTGAGCCACCTC-TCCAGCCCCAGTGAGGCTCGCTCTGTAAAAAGTTC  1098
      |||||||||||||| ||||| |||||||||||||||||||| ||    ||
seq2  AGCTGAGCCACCTCTTCCAG-CCCAGTGAGGCTCGCTCTGTGAA---GTC  1084

seq1  CTTTTATTTCTTCTGTATC-TTCCGCCATCT-TGCA-TCTGCTCAGGCAA  1145
       || |||||| |||| ||| |||||||||||  ||| |||   |||||||
seq2  TTTATATTTC-TCTGGATCTTTCCGCCATCTGGGCACTCTTGCCAGGCAA  1133

seq1  TGCC  1149
      ||||
seq2  TGCC  1137

seq1: chr10_116013325_116014322
seq2: B6Ng01-172O21.g_63_1064 (reverse)

seq1  TAAATAA-GTCTTTCAGCCAG-AGTGAGCAGGAACTGAGAGAGCAGGATT  48
      ||||||| ||| ||||||||| ||||||||||||||||||||||||||||
seq2  TAAATAAGGTCCTTCAGCCAGAAGTGAGCAGGAACTGAGAGAGCAGGATT  50

seq1  GACGGGAGTGAGCGGGGCTGACTGGA-GCAAGCAGAGATCCTAAAATTCA  97
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  GACGGGAGTGAGCGGAGCTGACTGGAGGCAAGCAGAGATCCTAAAATTCA  100

seq1  ATTCCCAACAACCACATGAAGGCTCACAACCATCTGTTCAGCTG-AAGTG  146
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATT-CCAACAACCACATGAAGGCTCACAACCATCTGTTCAGCTGAAAGTG  149

seq1  TACTCACATACATAAAATAAATAAATAAATCTTAAAGAATAAAAAAGTAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACATACATAAAATAAATAAATAAATCTTAAAGAATAAAAAAGTAA  199

seq1  AACTCAAAAAACAGATTCAAGAAATGGACGTGGTGGCGCATGCCTTTGAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAAAAACAGATTCAAGAAATGGACGTGGTGGCGCATGCCTTTGAT  249

seq1  CCTAGCACTTGGGAGGCAGAGGGAGGCAGGTGGATTTCTAAGTTCAGGGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACTTGGGAGGCAGAGGGAGGCAGGTGGATTTCTAAGTTCAGGGC  299

seq1  CAGCCTGGTCTACAGAGCGAGTTCCAGGACAGCCAATGTACACAGAGAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTACAGAGCGAGTTCCAGGACAGCCAATGTACACAGAGAAA  349

seq1  CCCTGTCTCGGAAAAAAGAAAAGAAAAGAAACAACTAAGCCAGCAACTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCGGAAAAAAGAAAAGAAAAGAAACAACTAAGCCAGCAACTGG  399

seq1  TTTGCTTGAAGCTTATTTCTTGAGACTCTAACTCCTATACATTACAGAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGAAGCTTATTTCTTGAGACTCTAACTCCTATACATTACAGAAA  449

seq1  GTGTGTAAATGTAACCAAGACAAGAGTCTTGCTCACACTCAGACCTGTAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTAAATGTAACCAAGACAAGAGTCTTGCTCACACTCAGACCTGTAG  499

seq1  GGATCATGGTGGAGGAGAGATGAGATGTAAATTAAGATCCATGGTGACAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATGGTGGAGGAGAGATGAGATGTAAATTAAGATCCATGGTGACAT  549

seq1  ACTCAGTAATGAGTATTGGGGGTTGGGGGAGTCAGGAACGATTTCATGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTAATGAGTATTGGGGGTTGGGGGAGTCAGGAACGATTTCATGAA  599

seq1  GAAACTGACATAGGCCATAAGTTTACCAAGTAACAGAGAGAAAGTGACAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGACATAGGCCATAAGTTTACCAAGTAACAGAGAGAAAGTGACAC  649

seq1  TTAACACCCAGAGCCACACATGCAAACAGGCTTATGAATAAAAAGGCAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACCCAGAGCCACACATGCAAACAGGCTTATGAATAAAAAGGCAAA  699

seq1  TGTTTAGACTTAAGGAGCAAATGAGTTCCAAACAGTTAACTAAATGGTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGACTTAAGGAGCAAATGAGTTCCAAACAGTTAACTAAATGGTCT  749

seq1  TGGACCCTGAGTTTGATCATATATAAAAATGTGTCTACCAAAGGAAAACT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCTGAGTTTGATCATATATAAAAATGTGTCTACCAAAGGAAAACT  799

seq1  TTGTATTTCTCTACACAGTTCAGTTTTTTTCATTTGTATGTTGTATGTTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTCTCTACACAGTTCAGTTTTTTTCATTTGTATGTTGTATGTTG  849

seq1  TATAAGCCATGCGCCCATCCCAAAGGTAAAGACAACGCAGACCATTTTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCCATGCGCCCATCCCAAAGGTAAAGACAACGCAGACCATTTTAT  899

seq1  CACTTCATAATGCAGCGTTCCTCCCTGAAGTTAGATACCAAGTATCTGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCATAATGCAGCGTTCCTCCCTGAAGTTAGATACCAAGTATCTGCA  949

seq1  GCTTCATTTCAG-AAAAAAAAAAAAAAAACCTGTCAGAAAACAGCAAGAA  995
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCTTCATTTCAGAAAAAAAAAAAAAAAAACCTGTCAGAAAACAGCAAGAA  999

seq1  TTC  998
      |||
seq2  TTC  1002