BAC Information

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BAC

Clone NameB6Ng01-174P03
Chromosome10 (Build37)
Map Location 75,171,254 - 75,307,846
singlet/doubletdoublet
Overlap geneCabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2
Upstream geneEG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1, Susd2
Downstream geneMif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1, Pcbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174P03.bB6Ng01-174P03.g
ACCGA002884GA002885
length840809
definitionB6Ng01-174P03.b B6Ng01-174P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,306,946 - 75,307,846)(75,171,254 - 75,172,054)
sequence
gaattccatgtgatgcactcaccatcctataaacaacctttcccctctgc
actcagataaactcatttgccaagttggacttttggtagaatcattagcc
tggccctggtgcagtctgaggtaaacaggcttttgttcacaacttcccca
ggacagcagcccactttgtactacctgcgttctggcatgtgctattaata
gaactgtgtatgggtcccaagactatagttggataaaaagggatattttg
tgttaagccccttcaaactgaaacatctccttcagtggctttgagcctag
atgaataattcctgtgaaaaaatggaaggctttgtagggagggctgttaa
atatgcatgatgagcttactacagctttgggagtgttgtgcgtgtatggt
gggcttcacaagagggcaacaggccctgtccctgccagctccccacagga
cttctgaggttgtgtggcggttggcttttaatgacggccttgtgtgggtc
ttctgtgatggtctatgctactcctgtgagcagggtcctctgggaatgtg
acatcggtagcttggggcagaagctcagagccatatcttttagtaggtga
attgccagcaagcctgggctgcaaggtcaggtgaacaacaggggattaag
cctcctgggagcttagaggccacagaggttggagacaagatgcaggcaga
gaccctccctccatccccctttcaaaaagctaggcttgctgtccttcctt
gtgttctcagccaagtctgaggtcagcattcttttttttttttttaattt
ttaaaaaaagaatttatttattatatatatgtaagaccat
gaattcaacctctctgaactcaactgccaagaacagaggacaccaggaca
gcgggcagcctatggctatctggtgtattttccgggaaggttcttccaat
taaagacaaggagaatctgtgtgtctggagccaagcaggagtctgtggcc
ctgtcactctgctgctctcctgagtcctttccccacaaaatccctttgtg
gccactccaacacactgcagggctctgtaactcacattgtctttgtgccc
acccccacccccaagtccccctcagtgtccttagactgatgtagtcatcc
gaatgcacagccaccgtctcaggcgccacctaggggcatgcaggctcaac
caccgcagcgcagggcactctcagcgcggtgccctcctccatgcctagca
cacagcgggagctgtttaactgccaccatcagcactggcctgagagaggg
tctcagaaaggttaagaggaagagtgggcgcagaaagatgtcagctgagt
gtccggaacagcatgctcccctgggagtctctcccactttgggcaggtct
gtttacaggaatatggagctcctacagaaacaaacccacctgcccttctc
cccaggagagcaggatgaaagaccaggttcaggaccaactgaagagtcac
tgacagtcgggcactgggaactacatagggcccactcagagtttttggct
actgtacacaatctgcagtttttatacttgtcctcataaaggggaatttt
ggtaatctttgagagtctgttgccttttttcttgtgttttaagaacgaat
gaaacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_75306946_75307846
seq2: B6Ng01-174P03.b_41_880 (reverse)

seq1  ATGGTGGCTCACAACCATCTGTGACGAGATCTGACTTCCTCTTCTGGAGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTCTGAAGACAGCTACAATGTACTTACATATATATAATAAATAAA-TCTT  99
                       |||  ||||||||||||||||||||||| ||||
seq2  -----------------ATGGTCTTACATATATATAATAAATAAATTCTT  33

seq1  TTTTTAAAAATT--AAAAAAAAAAAAGAATGCTGACCTCAGACTTGGCTG  147
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAATTAAAAAAAAAAAAAAGAATGCTGACCTCAGACTTGGCTG  83

seq1  AGAACACAAGGAAGGACAGCAAGCCTAGC-TTTTGAAAGGGGGATGGAGG  196
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGAACACAAGGAAGGACAGCAAGCCTAGCTTTTTGAAAGGGGGATGGAGG  133

seq1  GAGGGTCTCTGCCTGCATCTTGTCTCCAACCTCTGTGGCCTCTAAGCT-C  245
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAGGGTCTCTGCCTGCATCTTGTCTCCAACCTCTGTGGCCTCTAAGCTCC  183

seq1  CAGGAGGCTTAATCCCCTGTTGTTCACCTGACCTTGCAGCCCAGGCTTGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCTTAATCCCCTGTTGTTCACCTGACCTTGCAGCCCAGGCTTGC  233

seq1  TGGCAATTCACCTACT-AAAGATATGGCTCTGAGCTTCTGCCCCAAGCTA  344
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGCAATTCACCTACTAAAAGATATGGCTCTGAGCTTCTGCCCCAAGCTA  283

seq1  CCGATGTCACATTCCCAGAGGACCCTGCTCACAGGAGTAGCATAGACCAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGTCACATTCCCAGAGGACCCTGCTCACAGGAGTAGCATAGACCAT  333

seq1  CACAGAAGACCCACACAAGGCCGTCATTAAAAGCCAACCGCCACACAACC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGACCCACACAAGGCCGTCATTAAAAGCCAACCGCCACACAACC  383

seq1  TCAGAAGTCCTGTGGGGAGCTGGCAGGGACAGGGCCTGTTGCCCTCTTGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGTCCTGTGGGGAGCTGGCAGGGACAGGGCCTGTTGCCCTCTTGT  433

seq1  GAAGCCCACCATACACGCACAACACTCCCAAAGCTGTAGTAAGCTCATCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCACCATACACGCACAACACTCCCAAAGCTGTAGTAAGCTCATCA  483

seq1  TGCATATTTAACAGCCCTCCCTACAAAGCCTTCCATTTTTTCACAGGAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATTTAACAGCCCTCCCTACAAAGCCTTCCATTTTTTCACAGGAAT  533

seq1  TATTCATCTAGGCTCAAAGCCACTGAAGGAGATGTTTCAGTTTGAAGGGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATCTAGGCTCAAAGCCACTGAAGGAGATGTTTCAGTTTGAAGGGG  583

seq1  CTTAACACAAAATATCCCTTTTTATCCAACTATAGTCTTGGGACCCATAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACACAAAATATCCCTTTTTATCCAACTATAGTCTTGGGACCCATAC  633

seq1  ACAGTTCTATTAATAGCACATGCCAGAACGCAGGTAGTACAAAGTGGGCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTATTAATAGCACATGCCAGAACGCAGGTAGTACAAAGTGGGCT  683

seq1  GCTGTCCTGGGGAAGTTGTGAACAAAAGCCTGTTTACCTCAGACTGCACC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGGGAAGTTGTGAACAAAAGCCTGTTTACCTCAGACTGCACC  733

seq1  AGGGCCAGGCTAATGATTCTACCAAAAGTCCAACTTGGCAAATGAGTTTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAGGCTAATGATTCTACCAAAAGTCCAACTTGGCAAATGAGTTTA  783

seq1  TCTGAGTGCAGAGGGGAAAGGTTGTTTATAGGATGGTGAGTGCATCACAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTGCAGAGGGGAAAGGTTGTTTATAGGATGGTGAGTGCATCACAT  833

seq1  GGAATTC  901
      |||||||
seq2  GGAATTC  840

seq1: chr10_75171254_75172054
seq2: B6Ng01-174P03.g_64_872

seq1  GAATTCAACCTCTCTGAACTCAACTGCCAAGAACAGAGGACACCAGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTCTCTGAACTCAACTGCCAAGAACAGAGGACACCAGGACA  50

seq1  GCGGGCAGCCTATGGCTATCTGGTGTATTTTCCGGGAAGGTTCTTCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCAGCCTATGGCTATCTGGTGTATTTTCCGGGAAGGTTCTTCCAAT  100

seq1  TAAAGACAAGGAGAATCTGTGTGTCTGGAGCCAAGCAGGAGTCTGTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACAAGGAGAATCTGTGTGTCTGGAGCCAAGCAGGAGTCTGTGGCC  150

seq1  CTGTCACTCTGCTGCTCTCCTGAGTCCTTTCCCCACAAAATCCCTTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACTCTGCTGCTCTCCTGAGTCCTTTCCCCACAAAATCCCTTTGTG  200

seq1  GCCACTCCAACACACTGCAGGGCTCTGTAACTCACATTGTCTTTGTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCCAACACACTGCAGGGCTCTGTAACTCACATTGTCTTTGTGCCC  250

seq1  ACCCCCACCCCCAAGTCCCCCTCAGTGTCCTTAGACTGATGTAGTCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCACCCCCAAGTCCCCCTCAGTGTCCTTAGACTGATGTAGTCATCC  300

seq1  GAATGCACAGCCACCGTCTCAGGCGCCACCTAGGGGCATGCAGGCTCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACAGCCACCGTCTCAGGCGCCACCTAGGGGCATGCAGGCTCAAC  350

seq1  CACCGCAGCGCAGGGCACTCTCAGCGCGGTGCCCTCCTCCATGCCTAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCAGCGCAGGGCACTCTCAGCGCGGTGCCCTCCTCCATGCCTAGCA  400

seq1  CACAGCGGGAGCTGTTTAACTGCCACCATCAGCACTGGCCTGAGAGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCGGGAGCTGTTTAACTGCCACCATCAGCACTGGCCTGAGAGAGGG  450

seq1  TCTCAGAAAGGTTAAGAGGAAGAGTGGGCGCAGAAAGATGTCAGCTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAAAGGTTAAGAGGAAGAGTGGGCGCAGAAAGATGTCAGCTGAGT  500

seq1  GTCCGGAACAGCATGCTCCCCTGGGAGTCTCTCCCACTTTGGGCAGGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGAACAGCATGCTCCCCTGGGAGTCTCTCCCACTTTGGGCAGGTCT  550

seq1  GTTTACAGGAATATGGAGCTCCTACAGAAACAAACCCACCTGCCCTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAGGAATATGGAGCTCCTACAGAAACAAACCCACCTGCCCTTCTC  600

seq1  CCCAGGAGAGCAGGATG-AAGACCAGGTTCAGGACCAACTGAAGAGTCAC  649
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCCAGGAGAGCAGGATGAAAGACCAGGTTCAGGACCAACTGAAGAGTCAC  650

seq1  TGACAGTCGGGCACTGGGAACTACATAGGGCCCACTCAGAG-TTTTGGCT  698
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGACAGTCGGGCACTGGGAACTACATAGGGCCCACTCAGAGTTTTTGGCT  700

seq1  ACTGTACACAATCTGCAG-TTTTATACTTGTCCTCATAAAGGG--AATTT  745
      |||||||||||||||||| ||||||||||||||||||||||||  | |||
seq2  ACTGTACACAATCTGCAGTTTTTATACTTGTCCTCATAAAGGGGAATTTT  750

seq1  GGT-ATC-TTGAGAGTCTGTTGCC-TTTTTCTTGTTGTTTTAAGAACGAA  792
      ||| ||| |||||||||||||||| ||||||||| |||||||||||||||
seq2  GGTAATCTTTGAGAGTCTGTTGCCTTTTTTCTTG-TGTTTTAAGAACGAA  799

seq1  TG-AACAAAA  801
      || |||||||
seq2  TGAAACAAAA  809