BAC Information

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BAC

Clone NameB6Ng01-174P04
Chromosome10 (Build37)
Map Location 12,984,970 - 13,129,923
singlet/doubletdoublet
Overlap genePhactr2, LOC100039475
Upstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829
Downstream geneFuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2, Gpr126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174P04.bB6Ng01-174P04.g
ACCGA002886GA002887
length642487
definitionB6Ng01-174P04.b B6Ng01-174P04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,984,970 - 12,985,609)(13,129,432 - 13,129,923)
sequence
gaattcatgtcctctgcaaagcagtaaggagtcttttttgggtgacaatc
cctcctactcctctttccctttctttaaaatgtttttttgggggaaggga
tacacgtacaaatggatgggtcaccacctaaagctgattacaaaggtttc
atctcaaaggctatgctatctgctgcctctggagactggtgggaaatgaa
cctggataccatatgcctgccggctacataactactgtctgcatggctac
ttcctggaggctaacctcctgcatgcctgttgttttctgcatgcctatct
ccttctaggaaggggaagtatggacacttttcatttttaaagtccagagg
caggaaacaaatagcttcaaggtaatagcatattgaaatatacaaaagat
cattaacaaagatgaggggaaaacttgacaagccagaaatggtgagtcta
aaattgtgagggctcgctcaatcgacatgatactattccatccaggcctc
cctcactcccgaagcagccacgtatttccaagctgcagtgcattggaatt
tgctggtagtggggaaaacgtgaaattttaactatataaaatatatgctc
ccaaatgtcatatactctttaaggaacatatatgatatagct
tttccagggttttttgttgcttaccctagccacccagaagtcagagaaac
aagccttttttactgctggctgacttttcttcaagagaacatcagccact
ttgcagtgttaactcccacaattgctccaaaactggcttcccagtgggag
gtgaagaccaggcaatggctaactgtgacagctcccttgagccaccatct
agaacataaaattcccactctgcccaattctcacgccaaatgcgggagca
ctaggtcctaacaggtggtaagactcatggtatggtcacagctcagtatt
gtctttccctggattcttgcatttctcttctgttatatttttatcttgtg
aagagccagctatgaaagggttagagggacctccccatccccagcaatac
tcttctctttacatattgttgcacttgagttcttgttaaaccattttttt
ttaatgtttggcataggcctaaatcctgttgctgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_12984970_12985609
seq2: B6Ng01-174P04.b_40_681

seq1  GAATTCATGTCCTCTGCAAAGCAGTAAGGAGTC-TTGTCGGATAAGCAAT  49
      ||||||||||||||||||||||||||||||||| || | || | | ||||
seq2  GAATTCATGTCCTCTGCAAAGCAGTAAGGAGTCTTTTTTGGGTGA-CAAT  49

seq1  CCCTCCTACTCCTCTTTCCCTTTCTTTAAAATG---GTCTCGAATAAGGG  96
      |||||||||||||||||||||||||||||||||    | | |   |||||
seq2  CCCTCCTACTCCTCTTTCCCTTTCTTTAAAATGTTTTTTTGGGGGAAGGG  99

seq1  ATACACGTACAAATGGATGGGTCACCACCTAAAGCTGATTACAAAGGTTT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACGTACAAATGGATGGGTCACCACCTAAAGCTGATTACAAAGGTTT  149

seq1  CATCTCAAAGGCTATGCTATCTGCTGCCTCTGGAGACTGGTGGGAAATGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAAAGGCTATGCTATCTGCTGCCTCTGGAGACTGGTGGGAAATGA  199

seq1  ACCTGGATACCATATGCCTGCCGGCTACATAACTACTGTCTGCATGGCTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGATACCATATGCCTGCCGGCTACATAACTACTGTCTGCATGGCTA  249

seq1  CTTCCTGGAGGCTAACCTCCTGCATGCCTGTTGTTTTCTGCATGCCTATC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGAGGCTAACCTCCTGCATGCCTGTTGTTTTCTGCATGCCTATC  299

seq1  TCCTTCTAGGAAGGGGAAGTATGGACACTTTTCATTTTTAAAGTCCAGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTAGGAAGGGGAAGTATGGACACTTTTCATTTTTAAAGTCCAGAG  349

seq1  GCAGGAAACAAATAGCTTCAAGGTAATAGCATATTGAAATATACAAAAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAACAAATAGCTTCAAGGTAATAGCATATTGAAATATACAAAAGA  399

seq1  TCATTAACAAAGATGAGGGGAAAACTTGACAAGCCAGAAATGGTGAGTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAACAAAGATGAGGGGAAAACTTGACAAGCCAGAAATGGTGAGTCT  449

seq1  AAAATTGTGAGGGCTCGCTCAATCGACATGATACTATTCCATCCAGGCCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTGAGGGCTCGCTCAATCGACATGATACTATTCCATCCAGGCCT  499

seq1  CCCTCACTCCCGAAGCAGCCACGTATTTCCAAGCTGCAGTGCATTGGAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTCCCGAAGCAGCCACGTATTTCCAAGCTGCAGTGCATTGGAAT  549

seq1  TTGCTGGTAGTGGGGAAAACGTGAAATTTTAACTAATATAAAATATATGC  596
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGCTGGTAGTGGGGAAAACGTGAAATTTTAACT-ATATAAAATATATGC  598

seq1  TCCCAAATGTCATATACTCTTTAAGGAACATATATGATATAGCT  640
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATGTCATATACTCTTTAAGGAACATATATGATATAGCT  642

seq1: chr10_13129432_13129923
seq2: B6Ng01-174P04.g_70_562 (reverse)

seq1  TAACAGCAACAGGATTTAGGCCTATGCCAAACATTAAAAAAAAATGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCAACAGGATTTAGGCCTATGCCAAACATTAAAAAAAAATGGTTT  50

seq1  AACAAGAACTCAAGTGCAACTGTATGTAAAGAGAAGAGTATTGCTGGGGA  100
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  AACAAGAACTCAAGTGCAACAATATGTAAAGAGAAGAGTATTGCTGGGGA  100

seq1  TGGGGAGGTCCCTCTAACCCTTTCATAGCTGGCTCTTCACAAGATAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGTCCCTCTAACCCTTTCATAGCTGGCTCTTCACAAGATAAAAA  150

seq1  TATAACAGAAGAGAAATGCAAGAATCCAGGGAAAGACAATACTGAGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAGAAGAGAAATGCAAGAATCCAGGGAAAGACAATACTGAGCTGT  200

seq1  GACCATACCATGAGTCTTACCACCTGTTAGGACCTAGTGCTCCCGCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATACCATGAGTCTTACCACCTGTTAGGACCTAGTGCTCCCGCATTT  250

seq1  GGCGTGAGAATTGGGCAGAGTGGGAATTTTATGTTCTAGATGGTGGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGAGAATTGGGCAGAGTGGGAATTTTATGTTCTAGATGGTGGCTCA  300

seq1  AGGGAGCTGTCACAGTTAGCCATTGCCTGGTCTTCACCACCCACTGGGAA  350
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGGAGCTGTCACAGTTAGCCATTGCCTGGTCTTCACCTCCCACTGGGAA  350

seq1  GCCAGTTTTGGAGCAATTGTGGGAGTTAACACTGCAAAGTGGCTGATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTTTGGAGCAATTGTGGGAGTTAACACTGCAAAGTGGCTGATGTT  400

seq1  CTCTTGAAGAAAAGTCAGCCAGTAGGACAGAAGGCTTGTTTCTCTGACTT  450
      |||||||||||||||||||||| || | | ||||||||||||||||||||
seq2  CTCTTGAAGAAAAGTCAGCCAGCAGTAAAAAAGGCTTGTTTCTCTGACTT  450

seq1  CTGGGTGGCTAGGGTAAGCAAC-TTTGTCCCTGGAAAGAATTC  492
      ||||||||||||||||||||||      |||||||||||||||
seq2  CTGGGTGGCTAGGGTAAGCAACAAAAAACCCTGGAAAGAATTC  493