BAC Information

Click to search

BAC

Clone NameB6Ng01-175D11
Chromosome10 (Build37)19 (Build37)
Map Location 124,757,863 - 124,759,08050,794,914 - 50,795,283
singlet/doubletsingletsinglet
Overlap geneSlc16a7
Upstream gene4930503E24Rik, LOC671416
Downstream geneLOC100042987, EG668313, LOC100042992, LOC668317, LOC100042994, Lrig3, LOC100043547
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175D11.bB6Ng01-175D11.g
ACCGA003082GA003083
length1,222448
definitionB6Ng01-175D11.b B6Ng01-175D11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(124,757,863 - 124,759,080)(50,794,914 - 50,795,283)
sequence
gaattctttgacccagtatttattttgtattcgctgatgaccagtgttct
tgtgtgcctttgaacgaggctcaaaatatgattaaatctctgtgccaatt
gttatcagaaagaaaagactttaattttcccaataccggtttgccagtac
caacccatcagttctggcaaatctccttctatactcagaagcgaaaatgc
caaaaattatgtccaacacatcggctgtcttgtatgtggggatgataacc
agcaaatccactcttgctggtccccacctcctcaatatactggattttca
aagagccttgtatgtttgctgatgaaggtgatagaggtaggaagttttgc
aaagcatctcaagtcagaatcaactctcttatgttttatgatataggact
ccacagcttcatcaaagctttggttcaaataactgaatatatccaaagaa
ctagcttgactaaatttctcaggctgtcaaaaagtttgcaagcagaatta
tcttttagagatgtacaatctttcactggacaggtaaaaatacaaatagg
gttctttgacgtttttgtaagactgtcattttgcacactgttagggtcca
aattagttatatccaatgtagacaaaactgtaatgccaaccactgcagat
ttggtctatttagatttagtcaaaatcagccactgcatcagggaagtcta
tacatttgcatttggaggcaactcctctgctgtaagcaaaataaaagttg
agcagaggaacccaaatgaggtgctagtggacgttcctactgcccagaca
caatccgtaatcagtgttgtgaaaccagccactccaggctgtcggcgaag
cacgtgtctaagcagcagaagggagctaagtgctctgtgcaagtggaaga
ctggaaaggctactggtgatacaaagggctggtacacaccctcaggccct
ccggaatgaagaaaatcaatctgttgctcacaaacacacagaaattaaaa
caaaaaacatacaaactctacagccagagagcatagtcaagggctctgca
tataaaacaaactgcagctggacttgccgcaattcccaacagtacatgac
ctcatacatgtgatccctctcctaagctgaaaaccaaccaaaccaaatgt
gaaatcttagactctaaagcctgtggattattcctataaccaacctcatt
tcccctctccctggaatgtgcg
tgtactaaaaccccatctgacccagagccttttttttttttttttttttt
ttttttgacagggattctctgtattaccgtctacttgaaatactactttc
tgttatccaaaggaaattcttagtaaggttctgttgcaaatggtcatttc
tccaagtagtatgaaaggacactgtcagaagtgtccatatctcatttgaa
acttgaacttagctaatgaatcttctgtattattaattccattttactca
ttcaaactcatcatgttatcaggttggaaataatttcacatttccataaa
tattttaggttgccatagcatctctgtactgcatgtcacttgcactgacc
acatgttaagctaataacttctctttacttgtatctaaatgcttattatt
tcatagcatgatggcatgttaaaatattgaaaatagtactggaatacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_124757863_124759080
seq2: B6Ng01-175D11.b_48_1268

seq1  GAATTCTTTGACCCAGTATTTATTTTGTATTCGCTGATGACCAGTGTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGACCCAGTATTTATTTTGTATTCGCTGATGACCAGTGTTCT  50

seq1  TGTGTGCCTTTGAACGAGGCTCAAAATATGATTAAATCTCTGTGCCAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCTTTGAACGAGGCTCAAAATATGATTAAATCTCTGTGCCAATT  100

seq1  GTTATCAGAAAGAAAAGACTTTAATTTTCCCAATACCGGTTTGCCAGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCAGAAAGAAAAGACTTTAATTTTCCCAATACCGGTTTGCCAGTAC  150

seq1  CAACCCATCAGTTCTGGCAAATCTCCTTCTATACTCAGAAGCGAAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCATCAGTTCTGGCAAATCTCCTTCTATACTCAGAAGCGAAAATGC  200

seq1  CAAAAATTATGTCCAACACATCGGCTGTCTTGTATGTGGGGATGATAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTATGTCCAACACATCGGCTGTCTTGTATGTGGGGATGATAACC  250

seq1  AGCAAATCCACTCTTGCTGGTCCCCACCTCCTCAATATACTGGATTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATCCACTCTTGCTGGTCCCCACCTCCTCAATATACTGGATTTTCA  300

seq1  AAGAGCCTTGTATGTTTGCTGATGAAGGTGATAGAGGTAGGAAGTTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCTTGTATGTTTGCTGATGAAGGTGATAGAGGTAGGAAGTTTTGC  350

seq1  AAAGCATCTCAAGTCAGAATCAACTCTCTTATGTTTTATGATATAGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATCTCAAGTCAGAATCAACTCTCTTATGTTTTATGATATAGGACT  400

seq1  CCACAGCTTCATCAAAGCTTTGGTTCAAATAACTGAATATATCCAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTTCATCAAAGCTTTGGTTCAAATAACTGAATATATCCAAAGAA  450

seq1  CTAGCTTGACTAAATTTCTCAGGCTGTCAAAAAGTTTGCAAGCAGAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTGACTAAATTTCTCAGGCTGTCAAAAAGTTTGCAAGCAGAATTA  500

seq1  TCTTTTAGAGATGTACAATCTTTCACTGGACAGGTAAAAATACAAATAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGAGATGTACAATCTTTCACTGGACAGGTAAAAATACAAATAGG  550

seq1  GTTCTTTGACGTTTTTGTAAGACTGTCATTTTGCACACTGTTAGGGTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTGACGTTTTTGTAAGACTGTCATTTTGCACACTGTTAGGGTCCA  600

seq1  AATTAGTTATATCCAATGTAGACAAAACTGTAATGCCAACCACTGCAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTATATCCAATGTAGACAAAACTGTAATGCCAACCACTGCAGAT  650

seq1  TTGGTCTATTTAGATTTAGTCAAAATCAGCCACTGCATCAGGGAAGTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTATTTAGATTTAGTCAAAATCAGCCACTGCATCAGGGAAGTCTA  700

seq1  TACATTTGCATTTGGAGGCAACTCCTCTGCTGTAAGCAAAATAAAAGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGCATTTGGAGGCAACTCCTCTGCTGTAAGCAAAATAAAAGTTG  750

seq1  AGCAGAGGAACCCAAATGAGGTGCTAGTGGACGTTCCTACTGCCCAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGAACCCAAATGAGGTGCTAGTGGACGTTCCTACTGCCCAGACA  800

seq1  CAATCCGTAATCAGTGTTGTGAAACCAGCCACTCCAGGCTGTCGGCGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCGTAATCAGTGTTGTGAAACCAGCCACTCCAGGCTGTCGGCGAAG  850

seq1  CACGTGTCTAAGCAGCAGAAGGGAGCTAAGTGCTCTGTGCAAAGTGGAAG  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CACGTGTCTAAGCAGCAGAAGGGAGCTAAGTGCTCTGTGC-AAGTGGAAG  899

seq1  ACTGGAAAGGCTACTGGTGATACAAGGGGCTGGTACACACCCTCAGGCCC  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACTGGAAAGGCTACTGGTGATACAAAGGGCTGGTACACACCCTCAGGCCC  949

seq1  TCCGGAATGAAGAAAATCAATCTG-TGCTCACAAACACACAGAAAATTAA  999
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  TCCGGAATGAAGAAAATCAATCTGTTGCTCACAAACACACAG-AAATTAA  998

seq1  AACAAAAAACAATAACAAACTCTACAGCCAGGAGAGCATAGTC-AGGGCT  1048
      |||||||||||   |||||||||||||||| |||||||||||| ||||||
seq2  AACAAAAAACA--TACAAACTCTACAGCCA-GAGAGCATAGTCAAGGGCT  1045

seq1  CTGCATATAAAACAAACTGCAGCCTGGACTTG-CGCAATTCCAAACAAGT  1097
      |||||||||||||||||||||| ||||||||| ||||||||| ||| |||
seq2  CTGCATATAAAACAAACTGCAG-CTGGACTTGCCGCAATTCCCAAC-AGT  1093

seq1  ACATGACCTCATACATGTGAT--CTCTCCTAAGCTTGAAAACCAAACCAA  1145
      |||||||||||||||||||||  ||||||||||| |||||||| ||||||
seq2  ACATGACCTCATACATGTGATCCCTCTCCTAAGC-TGAAAACC-AACCAA  1141

seq1  ACCAAAATGAAAAATCTTAGGACTCAAAAAGCTGTGG-TTA-TCCTATAA  1193
      ||| |||||  |||||||| ||||| |||  |||||| ||| ||||||||
seq2  ACC-AAATGTGAAATCTTA-GACTCTAAAGCCTGTGGATTATTCCTATAA  1189

seq1  CCA--CTCATTTCC---CTCCCTG--ATGTGC  1218
      |||  |||||||||   |||||||  ||||||
seq2  CCAACCTCATTTCCCCTCTCCCTGGAATGTGC  1221

seq1: chr19_50794914_50795283
seq2: B6Ng01-175D11.g_149_518

seq1  GTCTACTTGAAATACTACTTTCTGTTATCCAAAGGAAATTCTTAGTAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTTGAAATACTACTTTCTGTTATCCAAAGGAAATTCTTAGTAAGG  50

seq1  TTCTGTTGCAAATGGTCATTTCTCCAAGTAGTCTGAAAGGACACTGTCAG  100
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTCTGTTGCAAATGGTCATTTCTCCAAGTAGTATGAAAGGACACTGTCAG  100

seq1  AAGTGTCCATATCTCATTTGAAACTTGAACTTAGCTAATGAATCTTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCCATATCTCATTTGAAACTTGAACTTAGCTAATGAATCTTCTGT  150

seq1  ATTATTAATTCCATTTTACTCATTCAAACTCAGCATGTTATCAGGTTGGA  200
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTATTAATTCCATTTTACTCATTCAAACTCATCATGTTATCAGGTTGGA  200

seq1  AATAATTTCACATTTCCATAAATATTTTAGGTTGCCATAGCATCTCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTCACATTTCCATAAATATTTTAGGTTGCCATAGCATCTCTGTA  250

seq1  CTGCATGTCACTTGCACTGACCACATGTTAAGCTAATAACTTCTCTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTCACTTGCACTGACCACATGTTAAGCTAATAACTTCTCTTTAC  300

seq1  TTGTATCTAAATGCTTATTATTTCGTAGCATGATGGCATGTTAAAATATT  350
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGTATCTAAATGCTTATTATTTCATAGCATGATGGCATGTTAAAATATT  350

seq1  GAAAATAGTACTGGAATACC  370
      ||||||||||||||||||||
seq2  GAAAATAGTACTGGAATACC  370