BAC Information

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BAC

Clone NameB6Ng01-179F18
Chromosome10 (Build37)
Map Location 98,565,870 - 98,698,141
singlet/doubletdoublet
Overlap geneWdr51b, Galnt4
Upstream geneEG667438, EG432494, Atp2b1
Downstream geneDusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl, LOC100042246, Kitl, LOC100043208, LOC100043211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179F18.bB6Ng01-179F18.g
ACCGA006102GA006103
length1,207966
definitionB6Ng01-179F18.b B6Ng01-179F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,696,954 - 98,698,141)(98,565,870 - 98,566,814)
sequence
gaattcataagatgatgaggaataattcatcggttgtatgatcaaacgct
gatagggatggaccaagtattcattatatgaaagggtggattaatgtcac
tggaagagaactctttgttttgggtagtttctaagctttcagaatggcct
tctgacccaaagctgctcatgactaagttcatcagatgtcacttggctat
cctccatgtgccccttacggaagtagcgaaccttgagacaaagactctct
tttgacttccgtacgcctctgtcggcttcctatttagccttcatggactc
tttgcacaagtaacactcgtgcttcatagttctcaataactaatatctaa
catcatatctaacataataaacagatcatgctttgaaatccggtaggtgt
gggatccagtttaaactcaccaattactagctttgtgatcccgggcactt
ttaaaaacctccctggatttcagatgacatccacggggagtcctacaagt
gtgaatgaaataacataagcaaagacacttgttaagatgctgggcatgtg
atgggtatccagtgaaagtcagctccatcctgcatcaatgcctcacggct
ggagtcatggaaacataagggaagatcatctgctagaggaagcatctgaa
acaggaaagaagaaaggattccagcgagcaggaggagctgctccgacatg
atttaaagtcaattattagctttttatgcactacatagaacaaagttgtt
ttttgttttttttttaaattaaatgctataacaaaatcatttaaggaaaa
aaaagttagtccatacattgcctaaagacttggctagtactcaaaagaaa
acatgcttcagcatctttgttatttttaaatgctcttctgctgaatgcgc
acacacgggacacatacacacacgttgtgtgcaagtgcgattgtggaggc
caaagatcaacttggagccaggaggcggttcttctcctgctagcctgcgt
tgtcccaggggtggaatccggtcattacctggttgccaagtgcctctttg
acttgtgtatacctccactgaatctaggttgtctctttaaataggtctcc
actttaatatctaaggctagctctggaaaccactggcctagtcaagcctg
accatatttgattccccctggctctaagactcctcgtggttggagtgtac
acaggct
gaattctcttttgcctcggacgtgtcactccctgattggctgtagcccat
cggccgagttgacgtcacggggaaggcagagcacaagtagtcataagata
cccttggcacatgcgcagattatttgtttaccacttagaacacaggatgt
cagcgccatcttgtaacggcgaatgtgggggcggctcccaacaccatgtg
atcacaaggctaggcacgatggcatgtactggacattgcagcattgggga
gacagaagcgagagaatctggctatagagaacatgggctatacactgagg
ccctatctcaaaccaaacaaaaaaataacgcaacttgcaatcatacaaga
gacatcaggactttgtgattagaagggagttgttgattgtctaaaatgtt
ttctctctcccttttctgagctctgtgcatcagcagacagaaactatgtc
tttgtacttcaaatgggaagataagaatctctaaaatgattatgatgatg
attaaatgtcaaaatgtaaacaggcacttacattataggatgtgacaatc
ttgtctgcttttgttcctgggaatatggcaaaggttttaaggtcaatttt
aagtgatgagatcgtaataactcttacctcccacctattattttaagttt
tatgtttactctgtaagaaaatcatttcatatatacaatgaacccatacc
ccacccctcattttggcctttgaacttcccctaaaaagcctcccaatggg
tccccctctttgcagctttcccatcttcattaataatccaagtccagcgg
gagctgccccatatgtgccacggcatgggggtgggtccactgggagggtg
agaaaaaaacttattatttatgaatgattccatctctttcccagttccta
cccactgtcaatagctcctcatttaaggggtggggtctatagagcaccat
cctattcccacgctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_98696954_98698141
seq2: B6Ng01-179F18.b_51_1257 (reverse)

seq1  AGCCTGTG---ACACCAACACCGAGGAGTCT--GAGGCAGGGGG-ATCAA  44
      ||||||||   || |||||  ||||||||||  ||| ||||||| |||||
seq2  AGCCTGTGTACACTCCAACCACGAGGAGTCTTAGAGCCAGGGGGAATCAA  50

seq1  ATA--GTCAGCCTGGACTAGG-CAGTGGCTCCCAG-GCTAGCCTAGGATA  90
      |||  ||||| || ||||||| |||||| | |||| ||||||||  ||||
seq2  ATATGGTCAGGCTTGACTAGGCCAGTGGTTTCCAGAGCTAGCCTTAGATA  100

seq1  -TACAGTGGAGACCTATTTAAAGAAAACAAACTAGATTCAGT-GAGGTAA  138
       || ||||||||||||||||||| | |||| ||||||||||| ||||| |
seq2  TTAAAGTGGAGACCTATTTAAAG-AGACAACCTAGATTCAGTGGAGGT-A  148

seq1  TACAACAAGTCAAAGAGGCACTT-GCCACCAGGTAATGACCCGATTTCCA  187
      ||| ||||||||||||||||||| || |||||||||||||| || |||||
seq2  TAC-ACAAGTCAAAGAGGCACTTGGCAACCAGGTAATGACCGGA-TTCCA  196

seq1  CCCCTGGGAC-ACGCAGGCTAGCAGGAG-AGAACCGCCTCCT-GCTCCAA  234
      |||||||||| ||||||||||||||||| ||||||||||||| |||||||
seq2  CCCCTGGGACAACGCAGGCTAGCAGGAGAAGAACCGCCTCCTGGCTCCAA  246

seq1  GTTGATCTTTGGCCTCCACAATCGCACTTGCACAC-ACGTGTGTGTATGT  283
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTTGATCTTTGGCCTCCACAATCGCACTTGCACACAACGTGTGTGTATGT  296

seq1  GT-CCGTGTGTGCGCA-TCAGGTGGAGAGCATTT-AAAATAAC-AAGATG  329
      || ||||||||||||| ||||  | ||||||||| |||||||| ||||||
seq2  GTCCCGTGTGTGCGCATTCAGCAGAAGAGCATTTAAAAATAACAAAGATG  346

seq1  CTGAAGCATGTTTTCTTTTGAGTACTAGCCAAGTCTTTAGGCAATGTATG  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCATGTTTTCTTTTGAGTACTAGCCAAGTCTTTAGGCAATGTATG  396

seq1  GACTAACTTTTTTTTCCTT-AATGATTTTGTTATAGCATTTAATTT-AAA  427
      ||||||||||||||||||| |||||||||||||||||||||||||| |||
seq2  GACTAACTTTTTTTTCCTTAAATGATTTTGTTATAGCATTTAATTTAAAA  446

seq1  AAAAAACAAAAAACAACTTTGTTCTATGTAGTGCATAAAAAGCTAATAAT  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAAAACAACTTTGTTCTATGTAGTGCATAAAAAGCTAATAAT  496

seq1  TGACTTTAAATCATGTCGGAGCAGCTCCTCCTGCTCGCTGGAATCCTTTC  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTAAATCATGTCGGAGCAGCTCCTCCTGCTCGCTGGAATCCTTTC  546

seq1  TTCTTTCCTGTTTCAGATGCTTCCTCTAGCAGATGATCTTCCCTTATGTT  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCTGTTTCAGATGCTTCCTCTAGCAGATGATCTTCCCTTATGTT  596

seq1  TCCATGACTCCAGCCGTGAGGCATTGATGCAGGATGGAGCTGACTTTCAC  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGACTCCAGCCGTGAGGCATTGATGCAGGATGGAGCTGACTTTCAC  646

seq1  TGGATACCCATCACATGCCCAGCATCTTAACAAGTGTCTTTGCTTATGTT  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACCCATCACATGCCCAGCATCTTAACAAGTGTCTTTGCTTATGTT  696

seq1  ATTTCATTCACACTTGTAGGACTCCCCGTGGATGTCATCTGAAATCCAGG  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTCACACTTGTAGGACTCCCCGTGGATGTCATCTGAAATCCAGG  746

seq1  GAGGTTTTTAAAAGTGCCCGGGATCACAAAGCTAGTAATTGGTGAGTTTA  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTTTAAAAGTGCCCGGGATCACAAAGCTAGTAATTGGTGAGTTTA  796

seq1  AACTGGATCCCACACCTACCGGATTTCAAAGCATGATCTGTTTATTATGT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGATCCCACACCTACCGGATTTCAAAGCATGATCTGTTTATTATGT  846

seq1  TAGATATGATGTTAGATATTAGTTATTGAGAACTATGAAGCACGAGTGTT  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATGATGTTAGATATTAGTTATTGAGAACTATGAAGCACGAGTGTT  896

seq1  ACTTGTGCAAAGAGTCCATGAAGGCTAAATAGGAAGCCGACAGAGGCGTA  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGCAAAGAGTCCATGAAGGCTAAATAGGAAGCCGACAGAGGCGTA  946

seq1  CGGAAGTCAAAAGAGAGTCTTTGTCTCAAGGTTCGCTACTTCCGTAAGGG  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGTCAAAAGAGAGTCTTTGTCTCAAGGTTCGCTACTTCCGTAAGGG  996

seq1  GCACATGGAGGATAGCCAAGTGACATCTGATGAACTTAGTCATGAGCAGC  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGGAGGATAGCCAAGTGACATCTGATGAACTTAGTCATGAGCAGC  1046

seq1  TTTGGGTCAGAAGGCCATTCTGAAAGCTTAGAAACTACCCAAAACAAAGA  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTCAGAAGGCCATTCTGAAAGCTTAGAAACTACCCAAAACAAAGA  1096

seq1  GTTCTCTTCCAGTGACATTAATCCACCCTTTCATATAATGAATACTTGGT  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTCCAGTGACATTAATCCACCCTTTCATATAATGAATACTTGGT  1146

seq1  CCATCCCTATCAGCGTTTGATCATACAACCGATGAATTATTCCTCATCAT  1177
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCTATCAGCGTTTGATCATACAACCGATGAATTATTCCTCATCAT  1196

seq1  CTTATGAATTC  1188
      |||||||||||
seq2  CTTATGAATTC  1207

seq1: chr10_98565870_98566814
seq2: B6Ng01-179F18.g_73_1038

seq1  GAATTCTCTTTTGCCTCGGACGTGTCACTCCCTGATTGGCTGTAGCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTGCCTCGGACGTGTCACTCCCTGATTGGCTGTAGCCCAT  50

seq1  CGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAAGATA  100

seq1  CCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGT  150

seq1  CAGCGCCATCTTGTAACGGCGAATGTGGGGGCGGCTCCCAACACCATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCCATCTTGTAACGGCGAATGTGGGGGCGGCTCCCAACACCATGTG  200

seq1  ATCACAAGGCTAGGCACGATGGCATGTACTGGACATTGCAGCATTGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAGGCTAGGCACGATGGCATGTACTGGACATTGCAGCATTGGGGA  250

seq1  GACAGAAGCGAGAGAATCTGGCTATAGAGAACATGGGCTATACACTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGCGAGAGAATCTGGCTATAGAGAACATGGGCTATACACTGAGG  300

seq1  CCCTATCTCAAACCAAACAAAAAAATAACGCAACTTGCAATCATACAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCTCAAACCAAACAAAAAAATAACGCAACTTGCAATCATACAAGA  350

seq1  GACATCAGGACTTTGTGATTAGAAGGGAGTTGTTGATTGTCTAAAATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAGGACTTTGTGATTAGAAGGGAGTTGTTGATTGTCTAAAATGTT  400

seq1  TTCTCTCTCCCTTTTCTGAGCTCTGTGCATCAGCAGACAGAAACTATGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCCCTTTTCTGAGCTCTGTGCATCAGCAGACAGAAACTATGTC  450

seq1  TTTGTACTTCAAATGGGAAGATAAGAATCTCTAAAATGATTATGATGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACTTCAAATGGGAAGATAAGAATCTCTAAAATGATTATGATGATG  500

seq1  ATTAAATGTCAAAATGTAAACAGGCACTTACATTATAGGATGTGACAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGTCAAAATGTAAACAGGCACTTACATTATAGGATGTGACAATC  550

seq1  TTGTCTGCTTTTGTTCCTGGGAATATGGCAAAGGTTTTAAGGTCAATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGCTTTTGTTCCTGGGAATATGGCAAAGGTTTTAAGGTCAATTTT  600

seq1  AAGTGATGAGATCGTAATAACTCTTACCT-CCACCTATTATTTTAAG-TT  648
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  AAGTGATGAGATCGTAATAACTCTTACCTCCCACCTATTATTTTAAGTTT  650

seq1  TATGTTTACTCTGTAAGAAAATCA-TTCATATATACAATGAACCCATA-C  696
      |||||||||||||||||||||||| ||||||||||||||||||||||| |
seq2  TATGTTTACTCTGTAAGAAAATCATTTCATATATACAATGAACCCATACC  700

seq1  CCACCCCTCATTTTGGCC-TTGAACTTCCCCT-AGAAGCCTCCCAATGG-  743
      |||||||||||||||||| ||||||||||||| | |||||||||||||| 
seq2  CCACCCCTCATTTTGGCCTTTGAACTTCCCCTAAAAAGCCTCCCAATGGG  750

seq1  -TCCCCTC-TTGCAGC-TTCCCATCTTCATTAATAATCCAAGTCCAGCGG  790
        |||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  TCCCCCTCTTTGCAGCTTTCCCATCTTCATTAATAATCCAAGTCCAGCGG  800

seq1  GAGCTG-CCCATATGTG-CACGGCATGGGG--TGGTCCACT-GGAGGGTG  835
      |||||| |||||||||| ||||||||||||   |||||||| ||||||||
seq2  GAGCTGCCCCATATGTGCCACGGCATGGGGGTGGGTCCACTGGGAGGGTG  850

seq1  AGAAAAAAAC-TAGTAGTTA-GAATGA-TCCA--TCCTTCCCAGTAGCTA  880
      |||||||||| || || ||| |||||| ||||  || ||||||||  |||
seq2  AGAAAAAAACTTATTATTTATGAATGATTCCATCTCTTTCCCAGTTCCTA  900

seq1  CCAACTGCCAATAGCTCCTCAGTTTAGGGGTGGGGTCTAGAGAGCACCA-  929
      || |||| ||||||||||||| || |||||||||||||| ||||||||| 
seq2  CCCACTGTCAATAGCTCCTCATTTAAGGGGTGGGGTCTATAGAGCACCAT  950

seq1  CCCACATCCACGCTAT  945
      || |   |||||||||
seq2  CCTATTCCCACGCTAT  966