BAC Information

Click to search

BAC

Clone NameB6Ng01-183F24
Chromosome10 (Build37)
Map Location 71,892,013 - 72,026,230
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik, LOC100040505
Downstream geneZwint, LOC432471, LOC544705, LOC100039981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183F24.bB6Ng01-183F24.g
ACCGA009016GA009017
length1,0451,130
definitionB6Ng01-183F24.b B6Ng01-183F24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,892,013 - 71,892,686)(72,025,108 - 72,026,230)
sequence
gaattcaaacacatgaatctttggggggtcaagcctattcaaaccatctc
agtgtttgtacaccagtagattgtatcctaaatgctcccccagcctccac
ctctgtactacctgtagatccaactcaatggtacagacgtcatagctgaa
tcatttgttcaccaatcttctgtaacttattttttaatatttgtttatat
tttaagattatcatattaatgtcctctaccatcatcatgagataagaaag
aggaacactcctccattgttggtggggttgcaggcttgtacaaccactct
ggaaatccgtctggcggttcctcagaaaattggacatagtactaccggag
gatccagcaatacctctcctgggcatatatccagaagatgccccaactgg
taagaaggacacatgctccactatgttcatagcagccttatttataatag
ccagaagctggaaagaacacaggtgccccttaacagaggaatggatacag
aaaatgtggtacatttacacaatggagtactattcagctattaaaaaaaa
tgaatttatgaaattcctgggcaaatggatggacctggagggcatcatcc
tgagtgaggtaacacattcacaaaggaacacacacaatatgtactcactg
ataagtggatattagcccagaaacttaggatacccacgatataagataca
atttgctaaacgcatgaaactcaagaagaacgaagaccaaagtgtggaca
ctttgccccttcttagaattgggaacaaaacacccatggaaggagttaca
gagataaagtttggagctgtgtcaaaagaatggaccatctagagactgcc
atatctggggatccatcccataatcagcatccaaacgctgacaccattgc
atacactagcaagattttatcgaaaagacccagatgtagctgtctcttgt
gagactatgctggggccctagcaaacacagaagtggatgctcacagtcag
ctaatggatggatcacagggctcccatgaggagctagagaagtac

gaattcatttgaatgtctgttgtccttcagttttcaatgttgcttgatag
aatttcaagtcctggattaagaaagataaatctgatctggaaatttggaa
tagactggagtcacaacaggagccagaaaaccaatcaacaacacaaacaa
caaaagcttctgtgagaattggcctccttgaagtcagaacacagccacag
gcagagaaccacagagagtagctgtagtcttgtggaataacaatggtaaa
ggcagagccataaactcaggaatgaacacagacgtgcaaatctcagtgca
tggtggtggagaaacatcttacttaagagagtgaaggaaggttaagaaac
tgcagtgtgctttttaatttttttgataaatgaggaccactgctttatgt
tgcccaggtatagattgagttgcagattacacagagcatcgaggccaccc
ctgggccatacaagatgctgaggctggaatgctggggagatgtcttgtta
agggtgatgcaatactagtgcctgaagaaaaatgcatgaataaaacagat
tgaaatctttgactagtgatgaaagcaagtctagaaaaactaagaaagag
actccttatgttcaagaactagaatataaatgtgttagtacctttgttaa
cgtgacacatacgagcatgatttggaaagggggaaggacagtagaggggt
ggcctatgacaatagaggggtggtctttatcagtttgccaagcctgtaga
acgttgtcttgactaatggttgatatgggaaggttcagctcactgtgggc
agtgccaatccttggcagatgatcctggcttatataagaaagcaaaccca
tagcacccgaaacagtaaataatgtccctccatggcttctgcaccagcct
ccaggttcctcctgccttgagttcctgcttctgatttcctttcttaagga
atatatgctgtaactgaaataaggtctttcctcctccaaggtaagttttg
gttcattttttttaatcaattgcaatagaaataaagtaagaactggatag
gccatttaatgaaacaaggagttgaaccaattaatgttcggggcttattg
agaaagaaactgtcatatgcagcaaggata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_71892013_71892686
seq2: B6Ng01-183F24.b_46_719

seq1  GAATTCAAACACATGAATCTTTGGGGGGTCAAGCCTATTCAAACCATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACACATGAATCTTTGGGGGGTCAAGCCTATTCAAACCATCTC  50

seq1  AGTGTTTGTACACCAGTAGATTGTATCCTAAATGCTCCCCCAGCCTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTGTACACCAGTAGATTGTATCCTAAATGCTCCCCCAGCCTCCAC  100

seq1  CTCTGTACTACCTGTAGATCCAACTCAATGGTACAGACGTCATAGCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTACTACCTGTAGATCCAACTCAATGGTACAGACGTCATAGCTGAA  150

seq1  TCATTTGTTCACCAATCTTCTGTAACTTATTTTTTAATATTTGTTTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTTCACCAATCTTCTGTAACTTATTTTTTAATATTTGTTTATAT  200

seq1  TTTAAGATTATCATATTAATGTCCTCTACCATCATCATGAGATAAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATTATCATATTAATGTCCTCTACCATCATCATGAGATAAGAAAG  250

seq1  AGGAACACTCCTCCATTGTTGGTGGGGTTGCAGGCTTGTACAACCACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACTCCTCCATTGTTGGTGGGGTTGCAGGCTTGTACAACCACTCT  300

seq1  GGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAG  350

seq1  GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG  400

seq1  TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG  450

seq1  CCAGAAGCTGGAAAGAACACAGGTGCCCCTTAACAGAGGAATGGATACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCTGGAAAGAACACAGGTGCCCCTTAACAGAGGAATGGATACAG  500

seq1  AAAATGTGGTACATTTACACAATGGAGTACTATTCAGCTATTAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGGTACATTTACACAATGGAGTACTATTCAGCTATTAAAAAAAA  550

seq1  TGAATTTATGAAATTCCTGGGCAAATGGATGGACCTGGAGGGCATCATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTATGAAATTCCTGGGCAAATGGATGGACCTGGAGGGCATCATCC  600

seq1  TGAGTGAGGTAACACATTCACAAAGGAACACACACAATATGTACTCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGGTAACACATTCACAAAGGAACACACACAATATGTACTCACTG  650

seq1  ATAAGTGGATATTAGCCCAGAAAC  674
      ||||||||||||||||||||||||
seq2  ATAAGTGGATATTAGCCCAGAAAC  674


seq1: chr10_72025108_72026230
seq2: B6Ng01-183F24.g_68_1197 (reverse)

seq1  TATCCTTGCTTC--ATGACAG-TTCTTTCTCAATAGCCCCGGTACATT-A  46
      |||||||||| |  ||||||| |||||||||||||  ||| | ||||| |
seq2  TATCCTTGCTGCATATGACAGTTTCTTTCTCAATAAGCCCCGAACATTAA  50

seq1  TATGTTCCACCTCTTGTTTCATT-AATGGCTTATCCAGTGTCTTACTTTC  95
      |  |||| ||  ||||||||||| |||||| |||||||| ||||||||| 
seq2  TTGGTTCAACTCCTTGTTTCATTAAATGGCCTATCCAGT-TCTTACTTT-  98

seq1  CTTTCTATTGCAATGATTTAAAAAAAATG-ACCAAAAC-TAACTTGGA-G  142
       |||||||||||||   |||||||||||| |||||||| || |||||| |
seq2  ATTTCTATTGCAATTGATTAAAAAAAATGAACCAAAACTTACCTTGGAGG  148

seq1  AGGAAAGACCTTATTTCAGTTTACAGCATATA-TCCTTAAGAAAGGAAAT  191
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  AGGAAAGACCTTATTTCAG-TTACAGCATATATTCCTTAAGAAAGGAAAT  197

seq1  CAG-AGCAGGAACTCAAGGCAGGAAGGAACCTGGAGGCTGGTGCAGAAGC  240
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGAAGCAGGAACTCAAGGCAGG-AGGAACCTGGAGGCTGGTGCAGAAGC  246

seq1  CATGGAGGGACATTATTTACTGTTTCGGGTGCTAT-GGTTTGCTTTCTTA  289
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATGGAGGGACATTATTTACTGTTTCGGGTGCTATGGGTTTGCTTTCTTA  296

seq1  TATAAGCCAGGATCATCTGCCAAGGATTGGCACTGCCCACAGTGAGCTGA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCCAGGATCATCTGCCAAGGATTGGCACTGCCCACAGTGAGCTGA  346

seq1  ACCTTCCCATATCAACCATTAGTCAAGACAACGTTCTACAGGCTTGGCAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCCATATCAACCATTAGTCAAGACAACGTTCTACAGGCTTGGCAA  396

seq1  ACTGATAAAGACCACCCCTCTATTGTCATAGGCCACCCCTCTACTGTCCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAAAGACCACCCCTCTATTGTCATAGGCCACCCCTCTACTGTCCT  446

seq1  TCCCCCTTTCCAAATCATGCTCGTATGTGTCACGTTAACAAAGGTACTAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTTTCCAAATCATGCTCGTATGTGTCACGTTAACAAAGGTACTAA  496

seq1  CACATTTATATTCTAGTTCTTGAACATAAGGAGTCTCTTTCTTAGTTTTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTATATTCTAGTTCTTGAACATAAGGAGTCTCTTTCTTAGTTTTT  546

seq1  CTAGACTTGCTTTCATCACTAGTCAAAGATTTCAATCTGTTTTATTCATG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTTGCTTTCATCACTAGTCAAAGATTTCAATCTGTTTTATTCATG  596

seq1  CATTTTTCTTCAGGCACTAGTATTGCATCACCCTTAACAAGACATCTCCC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCTTCAGGCACTAGTATTGCATCACCCTTAACAAGACATCTCCC  646

seq1  CAGCATTCCAGCCTCAGCATCTTGTATGGCCCAGGGGTGGCCTCGATGCT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCCAGCCTCAGCATCTTGTATGGCCCAGGGGTGGCCTCGATGCT  696

seq1  CTGTGTAATCTGCAACTCAATCTATACCTGGGCAACATAAAGCAGTGGTC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAATCTGCAACTCAATCTATACCTGGGCAACATAAAGCAGTGGTC  746

seq1  CTCATTTATCAAAAAAATTAAAAAGCACACTGCAGTTTCTTAACCTTCCT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTATCAAAAAAATTAAAAAGCACACTGCAGTTTCTTAACCTTCCT  796

seq1  TCACTCTCTTAAGTAAGATGTTTCTCCACCACCATGCACTGAGATTTGCA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTCTTAAGTAAGATGTTTCTCCACCACCATGCACTGAGATTTGCA  846

seq1  CGTCTGTGTTCATTCCTGAGTTTATGGCTCTGCCTTTACCATTGTTATTC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGTGTTCATTCCTGAGTTTATGGCTCTGCCTTTACCATTGTTATTC  896

seq1  CACAAGACTACAGCTACTCTCTGTGGTTCTCTGCCTGTGGCTGTGTTCTG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGACTACAGCTACTCTCTGTGGTTCTCTGCCTGTGGCTGTGTTCTG  946

seq1  ACTTCAAGGAGGCCAATTCTCACAGAAGCTTTTGTTGTTTGTGTTGTTGA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAGGAGGCCAATTCTCACAGAAGCTTTTGTTGTTTGTGTTGTTGA  996

seq1  TTGGTTTTCTGGCTCCTGTTGTGACTCCAGTCTATTCCAAATTTCCAGAT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTCTGGCTCCTGTTGTGACTCCAGTCTATTCCAAATTTCCAGAT  1046

seq1  CAGATTTATCTTTCTTAATCCAGGACTTGAAATTCTATCAAGCAACATTG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTATCTTTCTTAATCCAGGACTTGAAATTCTATCAAGCAACATTG  1096

seq1  AAAACTGAAGGACAACAGACATTCAAATGAATTC  1123
      ||||||||||||||||||||||||||||||||||
seq2  AAAACTGAAGGACAACAGACATTCAAATGAATTC  1130


| Home | SequenceCutter | Blast | Download |