BAC Information

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BAC

Clone NameB6Ng01-185H07
Chromosome10 (Build37)
Map Location 21,582,306 - 21,758,028
singlet/doubletdoublet
Overlap geneSgk
Upstream geneLOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936, LOC628133
Downstream geneLOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185H07.bB6Ng01-185H07.g
ACCGA010559GA010560
length1,1351,100
definitionB6Ng01-185H07.b B6Ng01-185H07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,582,306 - 21,583,414)(21,756,938 - 21,758,028)
sequence
gaattcctgtcctgacttctttcagtgataaactacaatgtggaagtgta
agcccaataaaccctttcctccccaacttgctttttgatcatggtgttgc
atcacagtactagtaaccctaactaagacaccatctttctccactgtggg
tggggcaagtggactgtgccaacagacagaagggctggccagtttgagtg
agcccaaattctgtgaaactcagaattgagcacgataagcatggggccag
ctccctgccaaactctacctgctctggaacatgtaaccatgtcaccccac
tgagaggaccgtggcagtcagtcctgtagcataaaaacctgaagttctcc
attctaatgaggggtctagataggccatgagtgtttagccaatgagtttt
ccttcctgggctttccttccgacaaaagatatttgatccctggttcaccc
tgagtaaggtttacgcatttccatttgccattaaacaaaacagtttgggc
aagcgaggactgtctcttcatcgttgtaaggacttgaataaagcatattg
ccttctttagtgtagatggctgtaagtcattcaggtgagcgcacaagaga
actcagagttccctggcacaaatggtacacacttgtaatacacaccttgg
gaggctggggcaggaggattcccagagtacataggaaaacctatctcaaa
caaactatcagaaagacagacaaagagaaagggtcatacccttctcaaaa
agaattgcctcatgccttgataccctctaacccaagctgaaaaggtcttt
cctggaccatgagtgtctgacattctgagtagaaacacaaaatgcccctc
tgcatgttctatggagagagacccattttcaatcttcatgaaatgaataa
gccagtttctcaccataaattttggctgagttcaggggcaaagaacctgg
aaatcttagccagtttgtggctatgtcagaatggatccccaactttaagt
caagtttgaattgaactacaccagtaagtttcaaaggcaaatctgggata
acttaagtgagaaccatagttcaaaggtaatagaagggcttcggggtgtt
agctcatttgatagagtgtttttacctatcatgtg
gaattcagtccaatttctcttttttaacctctccatgcaaatttacttac
cttcataataaggaagaacatgtcttcctttgtatttaaaattatgaaac
tagatactgatataggacacaaggtaattgggttcataagaagtgatgca
taatagagaggaacatgctcatggatttggaaccagtcacaactatgatg
tgtactggttattgaaaattaatatcagagtgacatagttgtatgtcttt
aggaaggtgactggtgggtgacactgatcctaaaatgcctcctgtatttt
agtctatacagaaaaacataggaacaaagaaaatattggggtacattcag
gaaacaggtctggaagccattaaatattcccagaggaaaagtttcaacca
gctgctaaaagtttttttaccaggtgggatgaaagatatcctttcaaata
caattggtgtgaaatgggtgagcgaaagctttaactattcactctctttc
cactttctctctactttggggttactcacagaatcccgaaacctttccac
caaaatctgggtttctaccagggcaaagattggaaaacgagttatgaaaa
cacatgcagagttcagttaagggccatgagtggaggaaaacagggaagtt
ctaggggagcagataagttatttttcagggcctaaggatataaaacccca
ggtgttgggagagaacagaatacgttggtggtatcccagctggaaagaga
tggtgtgtgcaaatcaagataatagcaagaaggttagtgacatagaaaga
tattctacaaaaaggtgttaatttgagggaaactactactgtcctggagt
tcgcagcactagagctgtttctcttttttattattagataatttctttat
ttacatttcaattgttatctccttttcccggtcttcccttctgaaaaggc
ccctaatcccattcttgcattccctgctcaccaatcacccactcccactt
tcctaatcctgtcatccccatacactggggcaatcgagccttcatgaaga
acatgggctctcctcccatgaatgtccaaacaaaaagtcattctctaatt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_21582306_21583414
seq2: B6Ng01-185H07.b_42_1176

seq1  GAATTCCTGTCCTGACTTCTTTCAGTGATAAACTACAATGTGGAAGTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCCTGACTTCTTTCAGTGATAAACTACAATGTGGAAGTGTA  50

seq1  AGCCCAATAAACCCTTTCCTCCCCAACTTGCTTTTTGATCATGGTGTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAATAAACCCTTTCCTCCCCAACTTGCTTTTTGATCATGGTGTTGC  100

seq1  ATCACAGTACTAGTAACCCTAACTAAGACACCATCTTTCTCCACTGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGTACTAGTAACCCTAACTAAGACACCATCTTTCTCCACTGTGGG  150

seq1  TGGGGCAAGTGGACTGTGCCAACAGACAGAAGGGCTGGCCAGTTTGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAAGTGGACTGTGCCAACAGACAGAAGGGCTGGCCAGTTTGAGTG  200

seq1  AGCCCAAATTCTGTGAAACTCAGAATTGAGCACGATAAGCATGGGGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAATTCTGTGAAACTCAGAATTGAGCACGATAAGCATGGGGCCAG  250

seq1  CTCCCTGCCAAACTCTACCTGCTCTGGAACATGTAACCATGTCACCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGCCAAACTCTACCTGCTCTGGAACATGTAACCATGTCACCCCAC  300

seq1  TGAGAGGACCGTGGCAGTCAGTCCTGTAGCATAAAAACCTGAAGTTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGACCGTGGCAGTCAGTCCTGTAGCATAAAAACCTGAAGTTCTCC  350

seq1  ATTCTAATGAGGGGTCTAGATAGGCCATGAGTGTTTAGCCAATGAGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAATGAGGGGTCTAGATAGGCCATGAGTGTTTAGCCAATGAGTTTT  400

seq1  CCTTCCTGGGCTTTCCTTCCGACAAAAGATATTTGATCCCTGGTTCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGGGCTTTCCTTCCGACAAAAGATATTTGATCCCTGGTTCACCC  450

seq1  TGAGTAAGGTTTACGCATTTCCATTTGCCATTAAACAAAACAGTTTGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAGGTTTACGCATTTCCATTTGCCATTAAACAAAACAGTTTGGGC  500

seq1  AAGCGAGGACTGTCTCTTCATCGTTGTAAGGACTTGAATAAAGCATATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGAGGACTGTCTCTTCATCGTTGTAAGGACTTGAATAAAGCATATTG  550

seq1  CCTTCTTTAGTGTAGATGGCTGTAAGTCATTCAGGTGAGCGCACAAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTAGTGTAGATGGCTGTAAGTCATTCAGGTGAGCGCACAAGAGA  600

seq1  ACTCAGAGTTCCCTGGCACAAATGGTACACACTTGTAATACACACCTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGTTCCCTGGCACAAATGGTACACACTTGTAATACACACCTTGG  650

seq1  GAGGCTGGGGCAGGAGGATTCCCAGAGTACATAGGAAAACCTATCTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGGGCAGGAGGATTCCCAGAGTACATAGGAAAACCTATCTCAAA  700

seq1  CAAACTATCAGAAAGACAGACAAAGAG-AAGGGTCATACCCTTCTCAAAA  749
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAAACTATCAGAAAGACAGACAAAGAGAAAGGGTCATACCCTTCTCAAAA  750

seq1  AGAATTGCCTCATGCCTTGATACCCTCTAACCCAAGCTG-AAAGGTC-TT  797
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  AGAATTGCCTCATGCCTTGATACCCTCTAACCCAAGCTGAAAAGGTCTTT  800

seq1  CCTGGACCATGAGTGTCTGACATTCTGAGTAG-AACAC-AAATG-CCCTC  844
      |||||||||||||||||||||||||||||||| ||||| ||||| |||||
seq2  CCTGGACCATGAGTGTCTGACATTCTGAGTAGAAACACAAAATGCCCCTC  850

seq1  TGCATGTTCTATGGAGAGAGACCCA-TTTCAATC-TCATG-AATGAATAA  891
      ||||||||||||||||||||||||| |||||||| ||||| |||||||||
seq2  TGCATGTTCTATGGAGAGAGACCCATTTTCAATCTTCATGAAATGAATAA  900

seq1  GCCAGTTTCTCACCATAAA-TTTGGCTGAGTTCAGGGGCAAAG-ACCTGG  939
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  GCCAGTTTCTCACCATAAATTTTGGCTGAGTTCAGGGGCAAAGAACCTGG  950

seq1  -AATCTTAGCCAGTTGGTGGCTATGTCAG-ATGGATCCCCAACTTTAAGT  987
       |||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  AAATCTTAGCCAGTTTGTGGCTATGTCAGAATGGATCCCCAACTTTAAGT  1000

seq1  CCAGTTTGAA-TGAACTACA-CAGTAAGTT--CAAGGCCAATCT-GGATA  1032
      | |||||||| ||||||||| |||||||||   ||||| ||||| |||||
seq2  CAAGTTTGAATTGAACTACACCAGTAAGTTTCAAAGGCAAATCTGGGATA  1050

seq1  ACTT-AGTGAG-ACCATAGTCAAAAGTAAATAGA--GGGTTTGGGGTG-T  1077
      |||| |||||| ||||||||  ||||  ||||||  || || |||||| |
seq2  ACTTAAGTGAGAACCATAGTTCAAAGGTAATAGAAGGGCTTCGGGGTGTT  1100

seq1  AGCTCA-TTGGTAGAGTG--TTTACCTAGCATGTG  1109
      |||||| ||| |||||||  |||||||| ||||||
seq2  AGCTCATTTGATAGAGTGTTTTTACCTATCATGTG  1135

seq1: chr10_21756938_21758028
seq2: B6Ng01-185H07.g_67_1166 (reverse)

seq1  AAATAGAGGATGACTTT---GTTGGACATCAATGGGAGGAGAGGCCCTTG  47
      || ||||| ||||||||    ||||||||  ||||||||||| |||| ||
seq2  AATTAGAGAATGACTTTTTGTTTGGACATTCATGGGAGGAGA-GCCCATG  49

seq1  GTC-TCATGAAGGCTCGA-TGCCCCAGTGTAGGGGAATGACAGGA-TAGG  94
       || |||||||||||||| |||||||||||| ||| ||||||||| ||||
seq2  TTCTTCATGAAGGCTCGATTGCCCCAGTGTATGGGGATGACAGGATTAGG  99

seq1  GAAGTGGGAGTGGGTGATTTGGTGAGCAGGGGATGGCAGAATGGGA-TAG  143
       |||||||||||||||| ||||||||||||| |||  ||||||||| |||
seq2  AAAGTGGGAGTGGGTGA-TTGGTGAGCAGGGAATGCAAGAATGGGATTAG  148

seq1  GGG-CTTTTCAG-AGGGGAGACCGGG-AAAGGAGATAACATTTGAAATGT  190
      ||| |||||||| |||| |||||||| ||||||||||||| |||||||||
seq2  GGGCCTTTTCAGAAGGGAAGACCGGGAAAAGGAGATAACAATTGAAATGT  198

seq1  AAATAAAGAAAATATCTAATAATAAAAAAGAGGAACAGCTCTGCTGCTGC  240
      ||||||||||| |||||||||||||||||||| |||||||||  ||||||
seq2  AAATAAAGAAATTATCTAATAATAAAAAAGAGAAACAGCTCTAGTGCTGC  248

seq1  GAACTCCAGGACAGTAGTAGTTTCCCTC-AATTAACACCTTTTTGTAGAA  289
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAACTCCAGGACAGTAGTAGTTTCCCTCAAATTAACACCTTTTTGTAGAA  298

seq1  TATCTTTCTATGTCACTAACCTTCTTGCTATTATCCTGATTTGCACACAC  339
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATCTTTCTATGTCACTAACCTTCTTGCTATTATCTTGATTTGCACACAC  348

seq1  CATCTCTTTCCAGCTGGGATACCACCAACGTATTCTGTTCTCTCCCAACA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTTCCAGCTGGGATACCACCAACGTATTCTGTTCTCTCCCAACA  398

seq1  CCTGGGGTTTTATATCCTTAGGCCCTGAAAAATAACTTATCTGCTCCCCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGTTTTATATCCTTAGGCCCTGAAAAATAACTTATCTGCTCCCCT  448

seq1  AGAACTTCCCTGTTTTCCTCCACTCATGGCCCTTAACTGAACTCTGCATG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTCCCTGTTTTCCTCCACTCATGGCCCTTAACTGAACTCTGCATG  498

seq1  TGTTTTCATAACTCGTTTTCCAATCTTTGCCCTGGTAGAAACCCAGATTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCATAACTCGTTTTCCAATCTTTGCCCTGGTAGAAACCCAGATTT  548

seq1  TGGTGGAAAGGTTTCGGGATTCTGTGAGTAACCCCAAAGTAGAGAGAAAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAAAGGTTTCGGGATTCTGTGAGTAACCCCAAAGTAGAGAGAAAG  598

seq1  TGGAAAGAGAGTGAATAGTTAAAGCTTTCGCTCACCCATTTCACACCAAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAGAGTGAATAGTTAAAGCTTTCGCTCACCCATTTCACACCAAT  648

seq1  TGTATTTGAAAGGATATCTTTCATCCCACCTGGTAAAAAAACTTTTAGCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGAAAGGATATCTTTCATCCCACCTGGTAAAAAAACTTTTAGCA  698

seq1  GCTGGTTGAAACTTTTCCTCTGGGAATATTTAATGGCTTCCAGACCTGTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTGAAACTTTTCCTCTGGGAATATTTAATGGCTTCCAGACCTGTT  748

seq1  TCCTGAATGTACCCCAATATTTTCTTTGTTCCTATGTTTTTCTGTATAGA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATGTACCCCAATATTTTCTTTGTTCCTATGTTTTTCTGTATAGA  798

seq1  CTAAAATACAGGAGGCATTTTAGGATCAGTGTCACCCACCAGTCACCTTC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATACAGGAGGCATTTTAGGATCAGTGTCACCCACCAGTCACCTTC  848

seq1  CTAAAGACATACAACTATGTCACTCTGATATTAATTTTCAATAACCAGTA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGACATACAACTATGTCACTCTGATATTAATTTTCAATAACCAGTA  898

seq1  CACATCATAGTTGTGACTGGTTCCAAATCCATGAGCATGTTCCTCTCTAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCATAGTTGTGACTGGTTCCAAATCCATGAGCATGTTCCTCTCTAT  948

seq1  TATGCATCACTTCTTATGAACCCAATTACCTTGTGTCCTATATCAGTATC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATCACTTCTTATGAACCCAATTACCTTGTGTCCTATATCAGTATC  998

seq1  TAGTTTCATAATTTTAAATACAAAGGAAGACATGTTCTTCCTTATTATGA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCATAATTTTAAATACAAAGGAAGACATGTTCTTCCTTATTATGA  1048

seq1  AGGTAAGTAAATTTGCATGGAGAGGTTAAAAAAGAGAAATTGGACTGAAT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGTAAATTTGCATGGAGAGGTTAAAAAAGAGAAATTGGACTGAAT  1098

seq1  TC  1091
      ||
seq2  TC  1100