BAC Information

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BAC

Clone NameB6Ng01-199H17
Chromosome16 (Build37)10 (Build37)
Map Location 20,140,004 - 20,140,61868,572,571 - 68,573,675
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneIgl, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24
Downstream geneYeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199H17.bB6Ng01-199H17.g
ACCGA020805GA020806
length1,0101,117
definitionB6Ng01-199H17.b B6Ng01-199H17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,140,004 - 20,140,618)(68,572,571 - 68,573,675)
sequence
gaattctttgttagctctgtaccccattttttaatggggctatttgaatt
tctggagtccagcttcttgagctctttgtacatattggatattagtcccc
tatcagatttaggattggtaaaaatcctttcctaatctgtttgtcttatt
gacagtgtcttttgccttacagaagatttgcaacttcatgaggtcccatt
tgtcaattcttgatcttacagcacaaaccattggtgttctgtttaggaat
tttcccccagtgcccatatctttgagactttcccccactttctcctctat
aaatttcaaagccaggtgtggtggcgcacgcctttaatcccagcacttgg
gaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaga
gtgagtttcaggacagccagggttacacagagaaaccctgtctcgaaaaa
ccaaaaaaagaaaaaaaaaattcagtgtctctggttttatgtggagttct
ttgatccatttagatttgaccttagtacaaggagatagaaatgaatcaat
tcgcattcttctacacgataaccaccagttttgccagcactatttgttga
aaatgctgtctttttcccactggatggttttagctttcttgtcaaagatc
aagtgaccataggtgtgtggattcatttctgggtcttcaattctattcca
ttgatttacctgtctgtcgagatacaccgtttcttatataccctttccaa
attgctatccccagggttcagagctctactcaaggcccccctccccctcc
cctctgtagagtacagctttccccactctcttctgttttctttatacctg
ttgtaccctagagatacctgtgtgctttttttcagtgtgttccaccatgg
gtttgcaaatttcccaccattttagtgctcagaagaaattaccccacata
tattaggtttggcgtcagttgcagacactaaaacatttagccgattgtgc
ttattagttc
gaattcaaataaccacttactgtggaaatactatcgtcatgtttgtaaaa
ataataactaaggtttattgttcatttgccgaaatgacagtgaccacgaa
gtgtcacaaggcatgttatgtcactgatgtttgcaatgtgactatgatag
aaaaaactcacagagctccattttactgacagaaaaaccaaggctgattg
gactggagagatggctcagcaattaggcagcacctgctgctcttccagaa
gatgggagtgaggtttccaacctgcacttcaatggctcattactgcctgt
aactctagtttcatgacatccaatgccctcttctggcctctgcaggcaac
cacatactatgtacacacacagacacacacagacacacacacacacacac
acacacacacacacacacacagacacacacacacacacacacactacatt
cacaaatttaaaataaatgaaagtaaatatatttttagaaaaaaaaatca
agcctttgacaggtaaaataacttcacgccattctcccagggaaagctga
gggttctgggaacggagcccagatgaactcatccctcgccaccaggtctt
gcctgagactgctgctgagcccactgctttctggaaggcccgagttgtct
gcctttgagcacttgctcttcagttttcattcgcagatcactctgatgtg
ctatctcaacactcaaaacaggtaaagagaccaaactgaaatctccattt
gaggaattctgtgctctcggggttacaatgaatcatttactattcgggaa
ttagcaaaaaatggtaaaccaaatttggagccctaatgtacggattacac
agttatgagcattgtattctaactgtgaatttgctgatgtcgactgatta
atctggggagttaatgagctttaggcactgagcacctttagccagccttt
ttcttctgggagataaggcttaagtttaaatttctttttcacaaaagatt
aatcaagatttttcccagctgccaaaagattaccgaccttaaaaacgatt
aaaactaattttaatcctagccaccaaagatttggatgggtcttattaat
atctcactccttcatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_20140004_20140618
seq2: B6Ng01-199H17.b_362_863 (reverse)

seq1  AAGCTGTACAATATGAGCAAGAGCTGAAAAAGTCTGAGGCAGCTCCAAGG  50
      |||||||||  ||      ||||  ||        | ||        |||
seq2  AAGCTGTACTCTA-----CAGAGGGGA--------GGGG-------GAGG  30

seq1  TCAGCCTGGATGCTGTAGTCCTGAA--GAAGTAATAGGAAGTCTTGGTGT  98
         |||| ||   |  ||  |||||     |  |||| ||   ||||   
seq2  GGGGCCTTGA--GTAGAGCTCTGAACCCTGGGGATAGCAA--TTTGGAAA  76

seq1  GTAGTATCATGGAAGAAAGCTGGTTTCAAGCGATTTTAAAGGGAAAACCG  148
      |  |||| ||  ||||||    || ||  |  |    | ||| |||    
seq2  G-GGTAT-AT--AAGAAACGGTGTATCTCGACA---GACAGGTAAA----  115

seq1  AGGCTTAATGGATTGTCATTCATTAGCTGCATCTACATTAAGTAAATCTA  198
          | |||||| |   ||| |  | |        ||  || | |||| |
seq2  ----TCAATGGAATAGAATTGAAGACC--------CA-GAAATGAATCCA  152

seq1  CAAAAGTAAATGTTTCTACAGAGAAACAGTGTCTCAAAAAACAAAACAAA  248
      || |  |  ||| |    ||    | |  || |   |||   ||||| | 
seq2  CACACCT--ATGGT----CACTTGATCTTTGACAAGAAAGCTAAAACCAT  196

seq1  C------AAAAAAGTTTTCAACGTTTTCAAACCTTCACCCTTTCTTTCAG  292
      |       ||||||    || | ||||||                     
seq2  CCAGTGGGAAAAAG---ACAGCATTTTCA---------------------  222

seq1  TCTACAAAGTATCTGGGACCAGAGGGGGGAGGGGGGACCACTACACCTCA  342
         ||||| ||                 | |  || |  |||        
seq2  ---ACAAA-TA-----------------GTGCTGGCAAAACT--------  243

seq1  CTCAGGTGCTACATCTACTAAAATGGGTTCACAATGATTAATGCCT-TCT  391
          |||| |  |||   || || |  | |  | ||||| ||  || |||
seq2  ----GGTGGT-TATCGTGTAGAA-GAATGCGAATTGATTCATTTCTATCT  287

seq1  TCCTGTCTTTGCTTCCTTCATTCTCTCTCTCTC-TCTCTCTCTCTCTCTC  440
       | |||  |    ||    | |||   |   ||      ||| | |    
seq2  CCTTGTACTAAGGTC---AAATCTAAATGGATCAAAGAACTC-CACATAA  333

seq1  TCTCTCTCTCTCTCTCTCTCTTTTTGGTTTTTCGAGACAGGGTTTCTCGA  490
         |     | ||   | | |||||  |||||        ||||| ||||
seq2  AACCAGAGACACTGAATTTTTTTTTTCTTTTT------TTGGTTTTTCGA  377

seq1  GACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAGCTCACTTTTTAGA  540
      |||||||||||||||| || |||||||||||||| | |||||| | ||||
seq2  GACAGGGTTTCTCTGTGTAACCCTGGCTGTCCTGAAACTCACTCTGTAGA  427

seq1  CCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGC  477

seq1  TGGGATTAAAGGCGTGCGCCACCAC  615
      |||||||||||||||||||||||||
seq2  TGGGATTAAAGGCGTGCGCCACCAC  502

seq1: chr10_68572571_68573675
seq2: B6Ng01-199H17.g_67_1183

seq1  GAATTCAAATAACCACTTACTGTGGAAATACTATCGTCATGTTTGTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAACCACTTACTGTGGAAATACTATCGTCATGTTTGTAAAA  50

seq1  ATAATAACTAAGGTTTATTGTTCATTTGCCGAAATGACAGTGACCACGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAACTAAGGTTTATTGTTCATTTGCCGAAATGACAGTGACCACGAA  100

seq1  GTGTCACAAGGCATGTTATGTCACTGATGTTTGCAATGTGACTATGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACAAGGCATGTTATGTCACTGATGTTTGCAATGTGACTATGATAG  150

seq1  AAAAAACTCACAGAGCTCCATTTTACTGACAGAAAAACCAAGGCTGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTCACAGAGCTCCATTTTACTGACAGAAAAACCAAGGCTGATTG  200

seq1  GACTGGAGAGATGGCTCAGCAATTAGGCAGCACCTGCTGCTCTTCCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGAGATGGCTCAGCAATTAGGCAGCACCTGCTGCTCTTCCAGAA  250

seq1  GATGGGAGTGAGGTTTCCAACCTGCACTTCAATGGCTCATTACTGCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAGTGAGGTTTCCAACCTGCACTTCAATGGCTCATTACTGCCTGT  300

seq1  AACTCTAGTTTCATGACATCCAATGCCCTCTTCTGGCCTCTGCAGGCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGTTTCATGACATCCAATGCCCTCTTCTGGCCTCTGCAGGCAAC  350

seq1  CACATACTATGTACACACACAGACACACACAGACACACACACACACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACTATGTACACACACAGACACACACAGACACACACACACACACAC  400

seq1  ACACACACACACACACACACAGACACACACACACACACACACACTACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACAGACACACACACACACACACACACTACATT  450

seq1  CACAAATTTAAAATAAATGAAAGTAAATATATTTTTAGAAAAAAAAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATTTAAAATAAATGAAAGTAAATATATTTTTAGAAAAAAAAATCA  500

seq1  AGCCTTTGACAGGTAAAATAACTTCACGCCATTCTCCCAGGGAAAGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTGACAGGTAAAATAACTTCACGCCATTCTCCCAGGGAAAGCTGA  550

seq1  GGGTTCTGGGAACGGAGCCCAGATGAACTCATCCCTCGCCACCAGGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGGGAACGGAGCCCAGATGAACTCATCCCTCGCCACCAGGTCTT  600

seq1  GCCTGAGACTGCTGCTGAGCCCACTGCTTTCTGGAAGGCCCGAGTTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGACTGCTGCTGAGCCCACTGCTTTCTGGAAGGCCCGAGTTGTCT  650

seq1  GCCTTTGAGCACTTGCTCTTCAG-TTTCATTCGCAGATCACTCTGATGTG  699
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCCTTTGAGCACTTGCTCTTCAGTTTTCATTCGCAGATCACTCTGATGTG  700

seq1  CTATCTCAACACTCAAAACAGGTAAAGAGACCAAACTGAAATCTCCATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCAACACTCAAAACAGGTAAAGAGACCAAACTGAAATCTCCATTT  750

seq1  GAGGAATTCTGTGCTCTCGGGGTTACAATGAATCA-TTACTATTCGGGAA  798
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAGGAATTCTGTGCTCTCGGGGTTACAATGAATCATTTACTATTCGGGAA  800

seq1  TTAGCAAAAAATGGTAAACCAAA-TTGGAG-CCTAATGTACGGATTACAC  846
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  TTAGCAAAAAATGGTAAACCAAATTTGGAGCCCTAATGTACGGATTACAC  850

seq1  AGTTATGAGCATTGTATTCTAACTGTGAATTTGCTGATGTCGACTGATTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGAGCATTGTATTCTAACTGTGAATTTGCTGATGTCGACTGATTA  900

seq1  ATCT-GGGAGTTAATGAGC-TTAGGCACTGAGCACC-TTAG-CAGCCTTT  942
      |||| |||||||||||||| |||||||||||||||| |||| ||||||||
seq2  ATCTGGGGAGTTAATGAGCTTTAGGCACTGAGCACCTTTAGCCAGCCTTT  950

seq1  T--CTCTGGGAGATAAGGCTTAAAGTTTAATTTCTTTTTCAC-AAAGATT  989
      |   |||||||||||||||||||  || |||||||||||||| |||||||
seq2  TTCTTCTGGGAGATAAGGCTTAAGTTTAAATTTCTTTTTCACAAAAGATT  1000

seq1  AATCAAAGATCTTT-CCAGCTGCCAAAAGATAACCGACCTAAAAACCGAT  1038
      |||| ||||| ||| |||||||||||||||| |||||||| |||| ||||
seq2  AATC-AAGATTTTTCCCAGCTGCCAAAAGATTACCGACCTTAAAAACGAT  1049

seq1  TAAAACTAAATTTAAATCTAGCCA-CAAAGATTTTGATAGTGTCTTATT-  1086
      ||||||||| |||||  ||||||| ||||||||| ||| | |||||||| 
seq2  TAAAACTAATTTTAATCCTAGCCACCAAAGATTTGGAT-GGGTCTTATTA  1098

seq1  ATATCTCATCTCTTCATGA  1105
      ||||||||   ||||||||
seq2  ATATCTCACTCCTTCATGA  1117