BAC Information

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BAC

Clone NameB6Ng01-199N19
Chromosome10 (Build37)
Map Location 28,392,821 - 28,393,983
singlet/doubletsinglet
Overlap geneE430004N04Rik
Upstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk
Downstream gene4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199N19.bB6Ng01-199N19.g
ACCGA021082GA021083
length1,1601,170
definitionB6Ng01-199N19.b B6Ng01-199N19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgcttgacaccattgcatacactagcaagattttactgaa
aggacccagatgtagctgtctcttgtgagactatgccggggccttagcaa
acacagaattggatgctcacagttcagctaattgaatggatccacacggg
ctccctattgaagaagtctagagtaaagttacctcaaggagcttaaatgg
gatcttccaatcctactaggtggaacaatcattatggaactaaccagtta
ccccttgagcttctgactctagctgctatggattacaaaaagatggtccc
tagtcctaacattctcactgttagaagaaaggccatggaacatacgccaa
actcttgtgt
gaattcatacgagagtttttcaatatgctgacagtattttatggcataaa
agagcaatgttatctggttgctatagcaacaatagtacacatgcgcttgt
gaggattttctagaaaccaccctaggatacatgaccactctctaccaaca
tttcctgagctagaaattgctctatattttgattcttttcaaagatttat
tttattagctttaattatacaaatgtctgtttgcctgtgggtaggtatgt
acatgtgaaggcagctgcccacagaggtgggatcagaccctctggagctg
gacttgcttcagtgatgaaccacttgacatggtgctggaaccaacgttgg
gttctctaaagaacactatgctgcccgaatcactaagccatctctttagc
ccattgtttgtattttacttttgtttttaataaaaaataaacaattttcc
tgggtcagatgcttttactaaataattgggaacataatttaaagtattat
gttttagaaatctctgctggaaaaaaatacctttattggtgaaatagtgt
gtttcagatgctttctgtggctataaatgtgacaccataaactttacggc
taaccctgattgatttcacgctagaaacgctaaccagtgttccaagggaa
agaagaaagtacagtcccagaaaggagaaatcagacctggccaaatttga
tgtgtctaaaatatcaagaataacctacatatcttaaaattcagcaaaca
caacaaacaaaaacatggaagaatttcttgtttttattttttttttgttt
ggctctttttttttttcttccttttaagatagatcactacaccatatctt
aggctggcctgaaacttatttatcccaggatggcctccaaactttagcct
cagttccccagtgctgttattataggcatggggcctccacagtcacttaa
atatcatttattaatatatgatgtgaaaaaaaatacttcagagtaaatgt
ggaaacaattgaaaagatcacaaacaatgcactaacagtactacctcaaa
gaaaaaaagacttgagaagccatacctagcttcatagatcgaaggattca
ttacaacgatggtaatttctccctaaaagtcactgctgaatcagaattca
gagagaagaactgtgtggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_28392821_28393983
seq2: B6Ng01-199N19.g_64_1233 (reverse)

seq1  CTCCACACAAGTC--CTCTCTGAATTCTGA-TCAGCAGTGACATTTTAGG  47
      |||||||||  ||  ||||||||||||||| ||||||||||| |||||||
seq2  CTCCACACAGTTCTTCTCTCTGAATTCTGATTCAGCAGTGAC-TTTTAGG  49

seq1  GAG-AATTAACATCGTTGTAAATTAAATCTTCCAATCTATG-AGCTGGGT  95
      ||| ||||| |||||||||||  | |||| | | ||||||| |||| |||
seq2  GAGAAATTACCATCGTTGTAA--TGAATCCTTCGATCTATGAAGCTAGGT  97

seq1  AT-GCCTCTCAAGTCTTTTTTCTTTTGGGGTAGTACTGTTGGTGCTTTTG  144
      || || |||||||||||||||  |||| |||||||||||| ||||  |||
seq2  ATGGCTTCTCAAGTCTTTTTTTCTTTGAGGTAGTACTGTTAGTGC-ATTG  146

seq1  TTGTTGATCTTTTC-ATTGTTTCCACATTTACTCTG-AGTA-TTTTTTTC  191
      ||  |||||||||| ||||||||||||||||||||| |||| ||||||||
seq2  TTTGTGATCTTTTCAATTGTTTCCACATTTACTCTGAAGTATTTTTTTTC  196

seq1  ACATCATTATATTAATAAATGATATTTAAGTGACTGTGGAGG-CCCATGC  240
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  ACATCA-TATATTAATAAATGATATTTAAGTGACTGTGGAGGCCCCATGC  245

seq1  CTATAATAACAGCACTGGGGAAACTGAGGCTAAAGTTTGGAGGCCATCCT  290
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTATAATAACAGCACTGGGG-AACTGAGGCTAAAGTTTGGAGGCCATCCT  294

seq1  GGGATAAAT-AGTTTCAGGCCAGCCTAAGATATGGTGTAGTGATCTATCT  339
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAATAAGTTTCAGGCCAGCCTAAGATATGGTGTAGTGATCTATCT  344

seq1  TAAAAGGAAG-AAAAAAAAAAGAGCCAAAC-AAAAAAAAATAAAAACAAG  387
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  TAAAAGGAAGAAAAAAAAAAAGAGCCAAACAAAAAAAAAATAAAAACAAG  394

seq1  AAATTCTTCCATGTTTTTGTTTGTTGTGTTTGCTGAATTTTAAGATATGT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTCCATGTTTTTGTTTGTTGTGTTTGCTGAATTTTAAGATATGT  444

seq1  AGGTTATTCTTGATATTTTAGACACATCAAATTTGGCCAGGTCTGATTTC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATTCTTGATATTTTAGACACATCAAATTTGGCCAGGTCTGATTTC  494

seq1  TCCTTTCTGGGACTGTACTTTCTTCTTTCCCTTGGAACACTGGTTAGCGT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTGGGACTGTACTTTCTTCTTTCCCTTGGAACACTGGTTAGCGT  544

seq1  TTCTAGCGTGAAATCAATCAGGGTTAGCCGTAAAGTTTATGGTGTCACAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCGTGAAATCAATCAGGGTTAGCCGTAAAGTTTATGGTGTCACAT  594

seq1  TTATAGCCACAGAAAGCATCTGAAACACACTATTTCACCAATAAAGGTAT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCCACAGAAAGCATCTGAAACACACTATTTCACCAATAAAGGTAT  644

seq1  TTTTTTCCAGCAGAGATTTCTAAAACATAATACTTTAAATTATGTTCCCA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCAGCAGAGATTTCTAAAACATAATACTTTAAATTATGTTCCCA  694

seq1  ATTATTTAGTAAAAGCATCTGACCCAGGAAAATTGTTTATTTTTTATTAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAGTAAAAGCATCTGACCCAGGAAAATTGTTTATTTTTTATTAA  744

seq1  AAACAAAAGTAAAATACAAACAATGGGCTAAAGAGATGGCTTAGTGATTC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAGTAAAATACAAACAATGGGCTAAAGAGATGGCTTAGTGATTC  794

seq1  GGGCAGCATAGTGTTCTTTAGAGAACCCAACGTTGGTTCCAGCACCATGT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCATAGTGTTCTTTAGAGAACCCAACGTTGGTTCCAGCACCATGT  844

seq1  CAAGTGGTTCATCACTGAAGCAAGTCCAGCTCCAGAGGGTCTGATCCCAC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGTTCATCACTGAAGCAAGTCCAGCTCCAGAGGGTCTGATCCCAC  894

seq1  CTCTGTGGGCAGCTGCCTTCACATGTACATACCTACCCACAGGCAAACAG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGGCAGCTGCCTTCACATGTACATACCTACCCACAGGCAAACAG  944

seq1  ACATTTGTATAATTAAAGCTAATAAAATAAATCTTTGAAAAGAATCAAAA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTATAATTAAAGCTAATAAAATAAATCTTTGAAAAGAATCAAAA  994

seq1  TATAGAGCAATTTCTAGCTCAGGAAATGTTGGTAGAGAGTGGTCATGTAT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGCAATTTCTAGCTCAGGAAATGTTGGTAGAGAGTGGTCATGTAT  1044

seq1  CCTAGGGTGGTTTCTAGAAAATCCTCACAAGCGCATGTGTACTATTGTTG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGTGGTTTCTAGAAAATCCTCACAAGCGCATGTGTACTATTGTTG  1094

seq1  CTATAGCAACCAGATAACATTGCTCTTTTATGCCATAAAATACTGTCAGC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCAACCAGATAACATTGCTCTTTTATGCCATAAAATACTGTCAGC  1144

seq1  ATATTGAAAAACTCTCGTATGAATTC  1163
      ||||||||||||||||||||||||||
seq2  ATATTGAAAAACTCTCGTATGAATTC  1170