BAC Information

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BAC

Clone NameB6Ng01-200C02
Chromosome10 (Build37)
Map Location 17,843,684 - 17,844,368
singlet/doubletsinglet
Overlap geneReps1
Upstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik
Downstream geneLOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200C02.bB6Ng01-200C02.g
ACCGA021277GA021278
length1,189685
definitionB6Ng01-200C02.b B6Ng01-200C02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataccgaatggctgaaaagcacctaaagaaatg
ttcaacatccttagtcatcagggaaatgcaaatcaaaaaaaccctaagat
tccacctcacaccagtcagaatggctaagatcagaaactcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagctggtacagccactctggaaatcagtctggcggttcctca
gaaaattggacatagtattatctgagtgcccagctgaaccactcctgagc
atatacccaaaagatgttccaacatataacaaggatacatgttccactat
gttcatagcagccttatttacaatagccagaagctggaaagaacccagat
gtcccccaacagaggaatggatattaaaaaatgtggtacatttacacaat
gaagtacacctcagctattaaaaaaatgacttcctgaaattcttaggcaa
atttatggaaagaatagaatagactagactagaatagaatagattaaagt
gaggtaacccaatcacaaaagaacacacatggtatgcactcactgataag
tggatattagcccagaagtttggaataccagagatacaagtcacaaacca
aatgaagctcatgaagaaggaagaccaaagtgtggatacttccgtccttc
ttagaagggggaacaaaatacccttgggaggacatacagagacaaagtgt
ggagcagaatctgaaggaaaggccatccagagacttccccacctggggat
ccatctcatatacagtcactaaacccggacactattgaggatgccaaaaa
gtgctagctgacaggagtctgacaaatacagaggtggatgctcacagcca
accattggtctgagcacagggttcccaatggaggagttagagaaaggact
gaagaagctgaaggggtctgtagccccatagagacacatatgactaacca
gccgccccccccccccagagctctagtactaaacaccaccaagagtacac
aatggagctaccgatggtctaggcatatatgtagcagaagatgacttgtg
gacatcaatgtgtaagcttgatgctcaatgttagggaatgctaggacagg
tactggatactgctaggcgtggctgcgaacgtattcatc
gaattctatcctctggtgatgctatctgatcccaagatctcattgtgaat
ttcagttctattaaaaaaaattattttgcatccaggataattactgatga
taataataatatgtagtagtagtagtagtggcagcagcagagagagactg
actgtatgtttgtatgcatatatatgcgtatgtgtgcacactcctgcatg
tatgtggaggctggagaacaactttcagaagtcagctctctccttccagc
acggtgctgcagggatagacacaggtggtcaggcttgcaaggcaaggcct
tttactggctaacccacttcctgacactgctttgacttaaggtttgtctt
gttttttcacatacaagatgatttaaatgttctcgctctttgtcttaatt
agattggtttaagttcttattactaatttgagttaatcaaaggataaact
agtgacagcccaattgcctacatcctacatggagcacacacagaccatat
atacttgctggttcgcagtccacttctcttctccaagtttcttcatggaa
gttaacaatgttataggaatagtgatgtcatatatatatatatatatata
tatatatatatatatatatatatatatatatatgtgtattcgcaggatat
aacactgtgcacacaactataaatgtgttgagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_17843684_17844368
seq2: B6Ng01-200C02.g_67_751 (reverse)

seq1  TTTCTCAACACAATTCTCGTTGTGTGCACAGTGTCTTATCCTGCAAATAC  50
      |||||||||||| || | ||||||||||||||||  |||||||| |||||
seq2  TTTCTCAACACATTTATAGTTGTGTGCACAGTGTTATATCCTGCGAATAC  50

seq1  ACATATATATATATATATATATATATATATATATATATATATATATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATATATATATATATATATATATATATATATATATATATATAT  100

seq1  ATATATGACATCACTATTCCTATAACATTGTTAACTTCCATGAAGAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGACATCACTATTCCTATAACATTGTTAACTTCCATGAAGAAACT  150

seq1  TGGAGAAGAGAAGTGGACTGCGAACCAGCAAGTATATATGGTCTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGAGAAGTGGACTGCGAACCAGCAAGTATATATGGTCTGTGTGT  200

seq1  GCTCCATGTAGGATGTAGGCAATTGGGCTGTCACTAGTTTATCCTTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATGTAGGATGTAGGCAATTGGGCTGTCACTAGTTTATCCTTTGAT  250

seq1  TAACTCAAATTAGTAATAAGAACTTAAACCAATCTAATTAAGACAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAAATTAGTAATAAGAACTTAAACCAATCTAATTAAGACAAAGAG  300

seq1  CGAGAACATTTAAATCATCTTGTATGTGAAAAAACAAGACAAACCTTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAACATTTAAATCATCTTGTATGTGAAAAAACAAGACAAACCTTAAG  350

seq1  TCAAAGCAGTGTCAGGAAGTGGGTTAGCCAGTAAAAGGCCTTGCCTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCAGTGTCAGGAAGTGGGTTAGCCAGTAAAAGGCCTTGCCTTGCA  400

seq1  AGCCTGACCACCTGTGTCTATCCCTGCAGCACCGTGCTGGAAGGAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGACCACCTGTGTCTATCCCTGCAGCACCGTGCTGGAAGGAGAGAG  450

seq1  CTGACTTCTGAAAGTTGTTCTCCAGCCTCCACATACATGCAGGAGTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCTGAAAGTTGTTCTCCAGCCTCCACATACATGCAGGAGTGTGC  500

seq1  ACACATACGCATATATATGCATACAAACATACAGTCAGTCTCTCTCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACGCATATATATGCATACAAACATACAGTCAGTCTCTCTCTGCT  550

seq1  GCTGCCACTACTACTACTACTACATATTATTATTATCATCAGTAATTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCACTACTACTACTACTACATATTATTATTATCATCAGTAATTATC  600

seq1  CTGGATGCAAAATAATTTTTTTTAATAGAACTGAAATTCACAATGAGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGCAAAATAATTTTTTTTAATAGAACTGAAATTCACAATGAGATC  650

seq1  TTGGGATCAGATAGCATCACCAGAGGATAGAATTC  685
      |||||||||||||||||||||||||||||||||||
seq2  TTGGGATCAGATAGCATCACCAGAGGATAGAATTC  685