BAC Information

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BAC

Clone NameB6Ng01-200I19
Chromosome10 (Build37)
Map Location 28,533,490 - 28,695,311
singlet/doubletdoublet
Overlap geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik
Upstream geneLOC100040961, LOC100040401, Ptprk
Downstream geneLOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064, LOC674389
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200I19.bB6Ng01-200I19.g
ACCGA021576GA021577
length5741,120
definitionB6Ng01-200I19.b B6Ng01-200I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,694,732 - 28,695,311)(28,533,490 - 28,534,599)
sequence
agtaatccagagtgcttgtggaagttttgtacactgatcatgcttgtgag
ccttagagtcctaggaaatcttccagcttattagctaagtgattgtttga
ctgcagacagcctgtggccagctgtcctgaacaacagacattttcaatct
ccagttcaaaggggaagtcaagacctggttgctttatgtctcaaaatcag
ctactgctatttttttctatttgaaagacaaagacacttttgtttatatc
aaatcaagacttaccttagaaagtgaatcgatattcacatattgtattct
atgaagttaggtacaactgacatgtaataaagcacacagattaggtaatt
agttagtcgagtgagcactggcaactgcaaacactgaaaactagatgcac
acctatcccctcttctagcatgctcctcgtgtctctttcaatttctactc
accctaaaaacctttctctttgtttcattttcttgctttcttttcttttt
tcttttctcttccttttctccccctcccttccttccttccttccttcctt
ccttcctccctccctccctccctc

gaattcactggatacacaatgaaaataaaggtgaggctaagccccaagag
agtaaggacacatattctcgaacaccctaaaggtgtgcatttgggcctgg
caatcctactgaacaattatttgtattagagaaagcattatatacacatt
cataaaagatcatttttggataacttcaaattctgaacatgcgcaaccag
tccagatgtctattgatggatgaaaaattagataaatcaaaggatggttc
caaatatttaaatactaatgcaggtgggggtgtattttaaaatagtaaat
attaaaataagataacttattaagtgaaaaaagcaaattgtaaagcaaaa
tatacattgtttttccatttgttaagaaaaatcacagtcaaaattataca
tttcagtttgatcatatacatctgtacatgatatcacatgcatgtgtgta
cacacacacacacactgagttatttgcagtaaccctgtggaaggaggaga
gagaatagaggtaaaggctgtgaatacatggattcttatttatttattta
tttatttatttatttatttatttatttattataagtacactgtagcagtc
atcagatactccagaagagggcatcagatttcattacagatggttgtaag
ccatccaccatgtggttgctgggatttgaactcaggaccttttggaagaa
cagtcggcactcttaacagctgagccatcttaccagcccaaattctttaa
ttgcaaaaaaaagcaaaaaaagaatggaaaaaaaatccatagtgtgactt
taaagaagtttgtttttgtctcaggtgatgcttaagaataattggaaaca
attagtttcagagtttcagcatcttatgtgaggctagtgactgctatgaa
atttaaaggtattttctaatgttcttcattaatgggagcagaagaaaaac
cttcttgcagctggtgcaataagcatgaccaacagtagagggttaatgtc
ttgagtagattgccctgtaggctggtgaatggcctttaagctggtgaatg
gcctgtaagctggtgatgtcctgtaggcttgtgaatggccctgataaggc
tggtgatgcctgtaagctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_28694732_28695311
seq2: B6Ng01-200I19.b_50_629 (reverse)

seq1  GAGGGAGGGAGGGAGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGGAGGGAGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGA  50

seq1  GGGGGAGAAAAGGAAGAGAAAAGAAAAAAGAAAAGAAAGCAAGAAAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGAAAAGGAAGAGAAAAGAAAAAAGAAAAGAAAGCAAGAAAATGA  100

seq1  AACAAAGAGAAAGGTTTTTAGGGTGAGTAGAAATTGAAAGAGACACGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAGAAAGGTTTTTAGGGTGAGTAGAAATTGAAAGAGACACGAGG  150

seq1  AGCATGCTAGAAGAGGGGATAGGTGTGCATCTAGTTTTCAGTGTTTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCTAGAAGAGGGGATAGGTGTGCATCTAGTTTTCAGTGTTTGCAG  200

seq1  TTGCCAGTGCTCACTCGACTAACTAATTACCTAATCTGTGTGCTTTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGTGCTCACTCGACTAACTAATTACCTAATCTGTGTGCTTTATTA  250

seq1  CATGTCAGTTGTACCTAACTTCATAGAATACAATATGTGAATATCGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGTTGTACCTAACTTCATAGAATACAATATGTGAATATCGATTC  300

seq1  ACTTTCTAAGGTAAGTCTTGATTTGATATAAACAAAAGTGTCTTTGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTAAGGTAAGTCTTGATTTGATATAAACAAAAGTGTCTTTGTCTT  350

seq1  TCAAATAGAAAAAAATAGCAGTAGCTGATTTTGAGACATAAAGCAACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGAAAAAAATAGCAGTAGCTGATTTTGAGACATAAAGCAACCAG  400

seq1  GTCTTGACTTCCCCTTTGAACTGGAGATTGAAAATGTCTGTTGTTCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGACTTCCCCTTTGAACTGGAGATTGAAAATGTCTGTTGTTCAGGA  450

seq1  CAGCTGGCCACAGGCTGTCTGCAGTCAAACAATCACTTAGCTAATAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGCCACAGGCTGTCTGCAGTCAAACAATCACTTAGCTAATAAGCT  500

seq1  GGAAGATTTCCTAGGACTCTAAGGCTCACAAGCATGATCAGTGTACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATTTCCTAGGACTCTAAGGCTCACAAGCATGATCAGTGTACAAAA  550

seq1  CTTCCACAAGCACTCTGGATTACTGAATTC  580
      ||||||||||||||||||||||||||||||
seq2  CTTCCACAAGCACTCTGGATTACTGAATTC  580


seq1: chr10_28533490_28534599
seq2: B6Ng01-200I19.g_69_1188

seq1  GAATTCACTGGATACACAATGAAAATAAAGGTGAGGCTAAGCCCCAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGATACACAATGAAAATAAAGGTGAGGCTAAGCCCCAAGAG  50

seq1  AGTAAGGACACATATTCTCGAACACCCTAAAGGTGTGCATTTGGGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGACACATATTCTCGAACACCCTAAAGGTGTGCATTTGGGCCTGG  100

seq1  CAATCCTACTGAACAATTATTTGTATTAGAGAAAGCATTATATACACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTACTGAACAATTATTTGTATTAGAGAAAGCATTATATACACATT  150

seq1  CATAAAAGATCATTTTTGGATAACTTCAAATTCTGAACATGCGCAACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGATCATTTTTGGATAACTTCAAATTCTGAACATGCGCAACCAG  200

seq1  TCCAGATGTCTATTGATGGATGAAAAATTAGATAAATCAAAGGATGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATGTCTATTGATGGATGAAAAATTAGATAAATCAAAGGATGGTTC  250

seq1  CAAATATTTAAATACTAATGCAGGTGGGGGTGTATTTTAAAATAGTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTTAAATACTAATGCAGGTGGGGGTGTATTTTAAAATAGTAAAT  300

seq1  ATTAAAATAAGATAACTTATTAAGTGAAAAAAGCAAATTGTAAAGCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATAAGATAACTTATTAAGTGAAAAAAGCAAATTGTAAAGCAAAA  350

seq1  TATACATTGTTTTTCCATTTGTTAAGAAAAATCACAGTCAAAATTATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTGTTTTTCCATTTGTTAAGAAAAATCACAGTCAAAATTATACA  400

seq1  TTTCAGTTTGATCATATACATCTGTACATGATATCACATGCATGTGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTTGATCATATACATCTGTACATGATATCACATGCATGTGTGTA  450

seq1  CACACACACACACACTGAGTTATTTGCAGTAACCCTGTGGAAGGAGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACTGAGTTATTTGCAGTAACCCTGTGGAAGGAGGAGA  500

seq1  GAGAATAGAGGTAAAGGCTGTGAATACATGGATTCTTATTTATTTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAGAGGTAAAGGCTGTGAATACATGGATTCTTATTTATTTATTTA  550

seq1  TTTATTTATTTATTTATTTATTTATTTATTATAAGTACACTGTAGCAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTATTTATTTATTTATTATAAGTACACTGTAGCAGTC  600

seq1  ATCAGATACTCCAGAAGAGGGCATCAGATTTCATTACAGATGGTTGTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATACTCCAGAAGAGGGCATCAGATTTCATTACAGATGGTTGTAAG  650

seq1  CCATCCACCATGTGGTTGCTGGGATTTGAACTCAGGACC-TTTGGAAGAA  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCATCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTTGGAAGAA  700

seq1  CAGTCGGCACTCTTAACAGCTGAGCCATCTTACCAGCCCAAATTCTTTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGTCGGCACTCTTAACAGCTGAGCCATCTTACCAGCCCAAATTC-TTTA  749

seq1  ATTGCAAAAAAAAAAGCAAAAAAAGAATGGAAAAAAAATCCATAGTGTGA  799
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGC--AAAAAAAAGCAAAAAAAGAATGGAAAAAAAATCCATAGTGTGA  797

seq1  CTTTAAAGAAGTTTGTTTTTGTCTCAGGTGATGCTTAAGAAT-ATTGGAA  848
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTTAAAGAAGTTTGTTTTTGTCTCAGGTGATGCTTAAGAATAATTGGAA  847

seq1  ACAATTAGTTTCAGAGTTTCAGCATCTTATGTGAGGCTAGTGACTGCTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAGTTTCAGAGTTTCAGCATCTTATGTGAGGCTAGTGACTGCTAT  897

seq1  GAAATTTAAAGGTATTTTCTAATGTTCTTCATTTAATGGAGCAG-AGAAA  947
      ||||||||||||||||||||||||||||||||| |  ||||||| |||||
seq2  GAAATTTAAAGGTATTTTCTAATGTTCTTCATTAATGGGAGCAGAAGAAA  947

seq1  AACCTTCTTGCAGCT-GTGCAATAAGCATGACC-ACAGTAGAGGG-TAAT  994
      ||||||||||||||| ||||||||||||||||| ||||||||||| ||||
seq2  AACCTTCTTGCAGCTGGTGCAATAAGCATGACCAACAGTAGAGGGTTAAT  997

seq1  GTC-TGAGTAGA-TGGCCTGTAGGCTGGTG-ATGGCCTGTAGGCTGGTG-  1040
      ||| |||||||| || |||||||||||||| ||||||| || ||||||| 
seq2  GTCTTGAGTAGATTGCCCTGTAGGCTGGTGAATGGCCTTTAAGCTGGTGA  1047

seq1  ATGGCCTGTAGGCTGGTGATGGCCTGTAGGCTGGTG-ATGG-CCTG--TA  1086
      |||||||||| |||||||||| |||||||||| ||| |||| ||||   |
seq2  ATGGCCTGTAAGCTGGTGATGTCCTGTAGGCTTGTGAATGGCCCTGATAA  1097

seq1  GGCTGGTGATGGCCTGTAGGCTGG  1110
      |||||||||| ||||||| |||||
seq2  GGCTGGTGAT-GCCTGTAAGCTGG  1120


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