BAC Information

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BAC

Clone NameB6Ng01-205L23
Chromosome11 (Build37)10 (Build37)
Map Location 99,916,992 - 99,918,00149,483,141 - 49,483,346
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31
Downstream geneKrt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205L23.bB6Ng01-205L23.g
ACCGA025345GA025346
length1,0211,059
definitionB6Ng01-205L23.b B6Ng01-205L23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,916,992 - 99,918,001)(49,483,141 - 49,483,346)
sequence
gaattcaacatcatagctgaccaaagatgagaagcatctctggagctatt
taaaaggatgttttataacctccaaggagggcattcaggtatttgatggg
gctgggtgtgaggtgatggaggcagtcagtcttctggctcctaccctctc
tgaaccctgcttcctggttcttactcaccagcgaaaccacaagtgcttga
gcaggctttgctccccaccctcctgctctgtaaacgctacaaattacagt
agctggctgcgaagcctgcaaggacagctggcggtggtttaatccagccc
ctatcctggtagggagcttgggtacagaagtggccatagtctcaagctcc
aatggtaaagggagagcaagtgagaatgtggctgctctgcctgtaattat
tctcaaccttagactcctcttgtccactggcaactgtccacgtgggctct
gatttggttgtgaggacttgagacgtttcccatgggatgctcagggaagg
tcagaggctgtcacactctcctcttcatggtacctctgctcttttctcta
aactgtggagtgtggcacaggtaacccatgcccgaggctctcaccaacgg
tagtcataataagaaagcacaatcttgattggccctactggagcaagtac
ctggcccaaccagcctcactcctccactgtgcttaaatagcttcttttat
ccaacaagttcaaagctgcctgacaaaataaaccatcttactcttgcacc
acgacagagtaagtgagcatcaatctttccatttaaaggaagagggaggg
agggtgagtcacacagtggttgagggattcttttgggtgggcacagagtt
gagtcagtgaggcctcagggggattgacctgttgccttccaaggttcata
atccaatgcccactgttcacttacaatgaagacaatttagtgtgaggagg
ttgcatgcaagtggcttggcttcctgagtagaaagctcggtccagggttt
actaatactctggagtagtga
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctggac
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactaactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagataaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggccctagcaaa
cacagaagtgggtgctcacagtcagctaatggatgggatcacagggctcc
caatggaggagctagagaagtacccaaggagctaagggatctgcacctat
agtgacacattatgactaaccagtaccggagctctgactctagctgcata
tgtatcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_99916992_99918001
seq2: B6Ng01-205L23.b_46_1065 (reverse)

seq1  CACTACTCCAG-GTA-TAGTAACCCCTGGACCCAGCATTTCTTCCCAGGA  48
      ||||||||||| ||| |||||| ||||||||| ||| ||||| | |||||
seq2  CACTACTCCAGAGTATTAGTAAACCCTGGACCGAGC-TTTCTACTCAGGA  49

seq1  AGCCAAACCACTTGGCATGCAACCTCCTCACACCTAATTGTC-TCATTGT  97
      |||||| |||||| |||||||||||||||||||  ||||||| |||||||
seq2  AGCCAAGCCACTT-GCATGCAACCTCCTCACACTAAATTGTCTTCATTGT  98

seq1  AAGTG-ACAGT-GGCATTGGA-TATGAACCTTGGAAG--CACAGGTCAAT  142
      ||||| ||||| ||||||||| |||||||||||||||   ||||||||||
seq2  AAGTGAACAGTGGGCATTGGATTATGAACCTTGGAAGGCAACAGGTCAAT  148

seq1  CCCCCTGAGGCCTCACTGACTC-ACTCTGTGCC--ACCAAAAGAATCCCT  189
      |||||||||||||||||||||| ||||||||||   ||||||||||||||
seq2  CCCCCTGAGGCCTCACTGACTCAACTCTGTGCCCACCCAAAAGAATCCCT  198

seq1  CAACCACTGTGTGACTCACCCTCCCTCCCTCTTCC-TTAAATGGAAAGAT  238
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAACCACTGTGTGACTCACCCTCCCTCCCTCTTCCTTTAAATGGAAAGAT  248

seq1  TGATGCTCACTTACTCTGTCGTGGTGCAAGAGTAAGATGGTTTATTTTGT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTCACTTACTCTGTCGTGGTGCAAGAGTAAGATGGTTTATTTTGT  298

seq1  CAGGCAGCTTTGAACTTGTTGGATAAAAGAAGCTATTTAAGCACAGTGGA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGCTTTGAACTTGTTGGATAAAAGAAGCTATTTAAGCACAGTGGA  348

seq1  GGAGTGAGGCTGGTTGGGCCAGGTACTTGCTCCAGTAGGGCCAATCAAGA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAGGCTGGTTGGGCCAGGTACTTGCTCCAGTAGGGCCAATCAAGA  398

seq1  TTGTGCTTTCTTATTATGACTACCGTTGGTGAGAGCCTCGGGCATGGGTT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTTCTTATTATGACTACCGTTGGTGAGAGCCTCGGGCATGGGTT  448

seq1  ACCTGTGCCACACTCCACAGTTTAGAGAAAAGAGCAGAGGTACCATGAAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGCCACACTCCACAGTTTAGAGAAAAGAGCAGAGGTACCATGAAG  498

seq1  AGGAGAGTGTGACAGCCTCTGACCTTCCCTGAGCATCCCATGGGAAACGT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGTGTGACAGCCTCTGACCTTCCCTGAGCATCCCATGGGAAACGT  548

seq1  CTCAAGTCCTCACAACCAAATCAGAGCCCACGTGGACAGTTGCCAGTGGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTCCTCACAACCAAATCAGAGCCCACGTGGACAGTTGCCAGTGGA  598

seq1  CAAGAGGAGTCTAAGGTTGAGAATAATTACAGGCAGAGCAGCCACATTCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGAGTCTAAGGTTGAGAATAATTACAGGCAGAGCAGCCACATTCT  648

seq1  CACTTGCTCTCCCTTTACCATTGGAGCTTGAGACTATGGCCACTTCTGTA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCTCTCCCTTTACCATTGGAGCTTGAGACTATGGCCACTTCTGTA  698

seq1  CCCAAGCTCCCTACCAGGATAGGGGCTGGATTAAACCACCGCCAGCTGTC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTCCCTACCAGGATAGGGGCTGGATTAAACCACCGCCAGCTGTC  748

seq1  CTTGCAGGCTTCGCAGCCAGCTACTGTAATTTGTAGCGTTTACAGAGCAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGGCTTCGCAGCCAGCTACTGTAATTTGTAGCGTTTACAGAGCAG  798

seq1  GAGGGTGGGGAGCAAAGCCTGCTCAAGCACTTGTGGTTTCGCTGGTGAGT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGGGAGCAAAGCCTGCTCAAGCACTTGTGGTTTCGCTGGTGAGT  848

seq1  AAGAACCAGGAAGCAGGGTTCAGAGAGGGTAGGAGCCAGAAGACTGACTG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCAGGAAGCAGGGTTCAGAGAGGGTAGGAGCCAGAAGACTGACTG  898

seq1  CCTCCATCACCTCACACCCAGCCCCATCAAATACCTGAATGCCCTCCTTG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATCACCTCACACCCAGCCCCATCAAATACCTGAATGCCCTCCTTG  948

seq1  GAGGTTATAAAACATCCTTTTAAATAGCTCCAGAGATGCTTCTCATCTTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTATAAAACATCCTTTTAAATAGCTCCAGAGATGCTTCTCATCTTT  998

seq1  GGTCAGCTATGATGTTGAATTC  1010
      ||||||||||||||||||||||
seq2  GGTCAGCTATGATGTTGAATTC  1020

seq1: chr10_49483141_49483346
seq2: B6Ng01-205L23.g_930_1125 (reverse)

seq1  TTTGATATATATGCAGCTAGAGTCAAGAGACCCAGGGTACTGGTTAGTTC  50
      ||||||| |||||||||||||||| ||||  ||  |||||||||||| ||
seq2  TTTGATACATATGCAGCTAGAGTC-AGAGCTCC--GGTACTGGTTAG-TC  46

seq1  ATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAACTCCTTGGCTA  100
      |||||| |||  || |||||||  |||||||||| ||| |||||||| ||
seq2  ATAATG-TGT--CA-CTATAGG--TGCAGATCCC-TTAGCTCCTTGGGTA  89

seq1  CTTTCTCTAGCTCCTCCATTGGGAGCCCTATGAT-CCATCCATTAGCTGA  149
      | ||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  C-TTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCCATCCATTAGCTGA  138

seq1  CTGTGAGCATCCACTTCTGTGTTTGCTA-GGCCCCGGCATAGTCTCACAA  198
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  CTGTGAGCACCCACTTCTGTGTTTGCTAGGGCCCCGGCATAGTCTCACAA  188

seq1  GAGACAGC  206
      ||||||||
seq2  GAGACAGC  196