BAC Information

Click to search

BAC

Clone NameB6Ng01-210D05
Chromosome10 (Build37)
Map Location 111,465,762 - 111,466,916
singlet/doubletsinglet
Overlap geneEG639527
Upstream geneEG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1
Downstream geneGlipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2, LOC100042639, 4921506J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210D05.bB6Ng01-210D05.g
ACCGA028603GA028604
length1,1571,148
definitionB6Ng01-210D05.b B6Ng01-210D05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatacagaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctaagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcttgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagcattatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtagacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatta
aagggtggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgcccacagtcagctaatggacggatcacagggctccca
atggaggagctagagaagtacccaaggagctaaagggatctgcaacccta
tagtgatcaacattatgaactaccagtacccggagctctgactctagctg
catatgtatcaaagatgactagtcgtcatcactgtaagagagtcatgaac
catcaaactttatatgcccagaatcagggtaacgcaggtcaaaggggatg
tggcggt
gaattccaggtgcccagtgagtggtacaaacgcttccctatataagtctg
gaaccagtccaaaatgaagaattaagcacttagaataccaaaggtgactt
ctttcattcaccaagttggtgaggaagcatggtttgggcacacagcaata
ataggggaagtgtttggcactagactcacacagactaattgtttctttgt
acagaagagaaacctgcaaagttcaggtcaggggtgaaatgtgtgtctgc
aggaagctgcctccagagggaagagaagagagagggctacgctgcacaca
ccaaccttgctgccaagttatgaagcggagagccttccttctcctttgga
gagaacaaaggagttggaagccatgcttaaaatcctaatgaagaaacccc
atggggtttgtctgagccggattgactttaaacaagtggcaaggacttgt
tatgaagcaatactaagacaggtgcaagaatccagagaggagactgaaaa
gtggggcccaagttatctgcgcagttatgacagcttgacatgcgatatag
gaaaactcaaaattcagggtgatatttactttcaagtaggcttagactta
tcaaaggaagatacaaaaggcactaacaatgtaagaagagattagtaagt
tggtcaaactctgcataaggacatctggatgaacaatgcacagatggaaa
ttaatcaccatcattagtccccagtgaattgcaaattgaaatcaccaata
cggtggagaaattcaatttaaaaatcataggcaacatcaagtgctggcaa
agatggacgggaccactcatcctgccactaggcttactatttgccagtgc
cttgaggagctgaatgcaggcaaactacatggtccagagagtctgaactc
actcaacatacaggagtatgtgtgtttaccagaaggcatgcacaacagag
ttcacccacagtataattcatatttcagcagcatgttaagccaccggtgc
gtgtgagctgtgtgtatcgtattaatggaaaaatggaaagcagagaaaaa
acaacagagatccacatcatgagtggtgatctctaaattatatgttgaga
aagactcgacatacttcactggagagacttgaaggtattgctattctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_111465762_111466916
seq2: B6Ng01-210D05.g_65_1212

seq1  GAATTCCAGGTGCCCAGTGAGTGGTACAAACGCTTCCCTATATAAGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGCCCAGTGAGTGGTACAAACGCTTCCCTATATAAGTCTG  50

seq1  GAACCAGTCCAAAATGAAGAATTAAGCACTTAGAATACCAAAGGTGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGTCCAAAATGAAGAATTAAGCACTTAGAATACCAAAGGTGACTT  100

seq1  CTTTCATTCACCAAGTTGGTGAGGAAGCATGGTTTGGGCACACAGCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTCACCAAGTTGGTGAGGAAGCATGGTTTGGGCACACAGCAATA  150

seq1  ATAGGGGAAGTGTTTGGCACTAGACTCACACAGACTAATTGTTTCTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGGAAGTGTTTGGCACTAGACTCACACAGACTAATTGTTTCTTTGT  200

seq1  ACAGAAGAGAAACCTGCAAAGTTCAGGTCAGGGGTGAAATGTGTGTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGAGAAACCTGCAAAGTTCAGGTCAGGGGTGAAATGTGTGTCTGC  250

seq1  AGGAAGCTGCCTCCAGAGGGAAGAGAAGAGAGAGGGCTACGCTGCACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTGCCTCCAGAGGGAAGAGAAGAGAGAGGGCTACGCTGCACACA  300

seq1  CCAACCTTGCTGCCAAGTTATGAAGCGGAGAGCCTTCCTTCTCCTTTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTTGCTGCCAAGTTATGAAGCGGAGAGCCTTCCTTCTCCTTTGGA  350

seq1  GAGAACAAAGGAGTTGGAAGCCATGCTTAAAATCCTAATGAAGAAACCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAAAGGAGTTGGAAGCCATGCTTAAAATCCTAATGAAGAAACCCC  400

seq1  ATGGGGTTTGTCTGAGCCGGATTGACTTTAAACAAGTGGCAAGGACTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTTTGTCTGAGCCGGATTGACTTTAAACAAGTGGCAAGGACTTGT  450

seq1  TATGAAGCAATACTAAGACAGGTGCAAGAATCCAGAGAGGAGACTGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGCAATACTAAGACAGGTGCAAGAATCCAGAGAGGAGACTGAAAA  500

seq1  GTGGGGCCCAAGTTATCTGCGCAGTTATGACAGCTTGACATGCGATATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCCCAAGTTATCTGCGCAGTTATGACAGCTTGACATGCGATATAG  550

seq1  GAAAACTCAAAATTCAGGGTGATATTTACTTTCAAGTAGGCTTAGACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCAAAATTCAGGGTGATATTTACTTTCAAGTAGGCTTAGACTTA  600

seq1  TCAAAGGAAGATACAAAAGGCACTAACAATGTAAGAAGAGATTAGTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGAAGATACAAAAGGCACTAACAATGTAAGAAGAGATTAGTAAGT  650

seq1  TGGTCAAACTCTGCATAAGGACATCTGGATGAACAATGCACAGATGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAACTCTGCATAAGGACATCTGGATGAACAATGCACAGATGGAAA  700

seq1  TTAATCACCATCATTAGTCCCCAGTGAATTGCAAATTGAAATCACCAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCACCATCATTAGTCCCCAGTGAATTGCAAATTGAAATCACCAATA  750

seq1  CGGTGGAGAAATTCAATTTAAAAATCATAGGCAACATCAAGTGCTGGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGAGAAATTCAATTTAAAAATCATAGGCAACATCAAGTGCTGGCAA  800

seq1  AGATGGACGGGACCACTCATCCTGCCACTAGGCTTACTATTTGCCAGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACGGGACCACTCATCCTGCCACTAGGCTTACTATTTGCCAGTGC  850

seq1  CTTGAGGAGCTGAATGCAGGCAAACTACATGGTCCAGAGAGTCTGAACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGAGCTGAATGCAGGCAAACTACATGGTCCAGAGAGTCTGAACTC  900

seq1  ACTCAACATACAGGAGTATGTGTGTTTACCAGAAGGCATGCACAACAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACATACAGGAGTATGTGTGTTTACCAGAAGGCATGCACAACAGAG  950

seq1  TTCA-CCACAGTATAATTCATAATTCAGCAGGCATGTTAAG-CACCGGTG  998
      |||| ||||||||||||||||| ||||||| |||||||||| ||||||||
seq2  TTCACCCACAGTATAATTCATATTTCAGCA-GCATGTTAAGCCACCGGTG  999

seq1  CGTGGTGAGCTGTTGTGTATTCGTA-TAATGGAAAAATGGAAAGCAGAGA  1047
      ||| |||||||| |||||| ||||| ||||||||||||||||||||||||
seq2  CGT-GTGAGCTG-TGTGTA-TCGTATTAATGGAAAAATGGAAAGCAGAGA  1046

seq1  AAAACAACCAGAGAT-CACATCATGAGT-GTGATTCTCCTAAATATAATG  1095
      ||||  | ||||||| |||||||||||| |||| ||| ||||||   |||
seq2  AAAAACAACAGAGATCCACATCATGAGTGGTGA-TCT-CTAAATTATATG  1094

seq1  TTGAGGAAAAGACATCGGACATACTTCACT-GAGAGACTTTGTAAAGGTA  1144
      |||||  |||||| || ||||||||||||| ||||||||   | ||||||
seq2  TTGAG--AAAGAC-TC-GACATACTTCACTGGAGAGACT---TGAAGGTA  1137

seq1  TGGTTATTCTC  1155
      | | |||||||
seq2  TTGCTATTCTC  1148