BAC Information

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BAC

Clone NameB6Ng01-212B05
Chromosome10 (Build37)
Map Location 39,842,105 - 39,842,994
singlet/doubletsinglet
Overlap geneSlc16a10
Upstream gene1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342
Downstream geneBxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1, Gpr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212B05.bB6Ng01-212B05.g
ACCGA029967GA029968
length451899
definitionB6Ng01-212B05.b B6Ng01-212B05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
caggccatccagaactaaacagtgagaacttgtcgcaaagaaaggaaaag
aatagagaaagaagaaaatgtcacatttttctttaaatatatagttataa
aactttaaagtttttttttaagtgtatgtgtgtgtgtctgtgcacctgtg
tgtctcccaacaggaagaccaacatagtcaactaacctggacccttgggg
gctccaaaagattggaccaccaaccaaagggactcagtttccctaacacc
ccccccccagcccccagcaaaatgcagcttggccttcatgcaggtctccc
aacaactggggaagtggctgtccctgaatctgttgccttcctgtgaattc
tgttcccctaactgggtcaccttgtccggtctcagtgggagaggatgtgc
ctagtcctgcagtggcttgatgtgtcagaggagaaggggagggggaaggg
a
gaattcacagcagctgtgattgcctacacaaagcctgcacatgatcaaac
aggtaaacactgcagcatgaggaaccctcagaggtccccctctcactgtg
gagaaagaatcagtcttccttgggagtatgaccattggtcagctgagcaa
gctttagggagtggccccacactcatgcacacacaggcagttctaactga
actctgagttatctttagggggagagtagggatgagatgaggagatcctg
aaaagttagaaaatggggcgtgcgctaaacataatcaaaattattataca
catgaataaaattatcatattttaaaaccatacacacaaggtagatagct
cctgaagaagaacaagagggttgtcttctgggctctatgtgtatacacgt
acatacacacacacagaccaaatcatcaccaatgaatgggctaccacaag
ccaagcactgtgtaaacactgcacataaaagctcccacacttgtagacct
tccacagctatggaaaagacagtgacaaaaatcacaaccacacaactata
aagccaatgcagcaatttaatagccataaacccaatgccataagcacaat
cctctgctttgcaaagtgcctggcaaactgaagcctcctaaacagtatta
gcagtgtctgggttttcaaggctgtgagtactctactcagtaaggaacct
attgtgtctgtaactcaggactgacacaaagggcagaagagggataacac
aatttacacttcacggtaacactagggtaacgatgacaggtgagcacatt
gtgaaatatgcttaattgccacttaagatgaccaacctggcaagctttta
tgatatatatttaccataagttgaaaaatgtaaaggcttttatacattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_39842105_39842994
seq2: B6Ng01-212B05.g_69_967

seq1  GAATTCACAGCAGCTGTGATTGCCTACACAAAGCCTGCACATGATCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCAGCTGTGATTGCCTACACAAAGCCTGCACATGATCAAAC  50

seq1  AGGTAAACACTGCAGCATGAGGAACCCTCAGAGGTCCCCCTCTCACTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAACACTGCAGCATGAGGAACCCTCAGAGGTCCCCCTCTCACTGTG  100

seq1  GAGAAAGAATCAGTCTTCCTTGGGAGTATGACCATTGGTCAGCTGAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAATCAGTCTTCCTTGGGAGTATGACCATTGGTCAGCTGAGCAA  150

seq1  GCTTTAGGGAGTGGCCCCACACTCATGCACACACAGGCAGTTCTAACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGGGAGTGGCCCCACACTCATGCACACACAGGCAGTTCTAACTGA  200

seq1  ACTCTGAGTTATCTTTAGGGGGAGAGTAGGGATGAGATGAGGAGATCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGTTATCTTTAGGGGGAGAGTAGGGATGAGATGAGGAGATCCTG  250

seq1  AAAAGTTAGAAAATGGGGCGTGCGCTAAACATAATCAAAATTATTATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTAGAAAATGGGGCGTGCGCTAAACATAATCAAAATTATTATACA  300

seq1  CATGAATAAAATTATCATATTTTAAAACCATACACACAAGGTAGATAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATAAAATTATCATATTTTAAAACCATACACACAAGGTAGATAGCT  350

seq1  CCTGAAGAAGAACAAGAGGGTTGTCTTCTGGGCTCTATGTGTATACACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGAAGAACAAGAGGGTTGTCTTCTGGGCTCTATGTGTATACACGT  400

seq1  ACATACACACACACAGACCAAATCATCACCAATGAATGGGCTACCACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACACACACAGACCAAATCATCACCAATGAATGGGCTACCACAAG  450

seq1  CCAAGCACTGTGTAAACACTGCACATAAAAGCTCCCACACTTGTAGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCACTGTGTAAACACTGCACATAAAAGCTCCCACACTTGTAGACCT  500

seq1  TCCACAGCTATGGAAAAGACAGTGACAAAAATCACAACCACACAACTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGCTATGGAAAAGACAGTGACAAAAATCACAACCACACAACTATA  550

seq1  AAGCCAATGCAGCAATTTAATAGCCATAAACCCAATGCCATAAGCACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAATGCAGCAATTTAATAGCCATAAACCCAATGCCATAAGCACAAT  600

seq1  CCTCTGCTTTGCAAAGTGCCTGGCAAACTGAAGCCTCCTAAACAGTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTTGCAAAGTGCCTGGCAAACTGAAGCCTCCTAAACAGTATTA  650

seq1  GCAGTGTCTGGG-TTTCAAGGCTGTGAGTACTCTACTCAGTAAGGAACCT  699
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTCTGGGTTTTCAAGGCTGTGAGTACTCTACTCAGTAAGGAACCT  700

seq1  ATTGTGTCTGTAACTCAGGACTGACACAAAGGGCAGAAGAGGGATAACAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTCTGTAACTCAGGACTGACACAAAGGGCAGAAGAGGGATAACAC  750

seq1  AA-TTACACTTCACGGTAACACTAGGGTAACGATGACAGGTGAGCACATT  798
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACACTTCACGGTAACACTAGGGTAACGATGACAGGTGAGCACATT  800

seq1  GTG-AATATGCTTAA-TGCCACTTAAGATGACCAACCTGGCAAGC-TTTA  845
      ||| ||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  GTGAAATATGCTTAATTGCCACTTAAGATGACCAACCTGGCAAGCTTTTA  850

seq1  TGATATATATTTACCATAAGT--GAAAATGT-AAGGC-TTTATACATTT  890
      |||||||||||||||||||||   ||||||| ||||| |||||||||||
seq2  TGATATATATTTACCATAAGTTGAAAAATGTAAAGGCTTTTATACATTT  899