BAC Information

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BAC

Clone NameB6Ng01-215K16
Chromosome10 (Build37)
Map Location 8,891,943 - 9,035,680
singlet/doubletdoublet
Overlap geneEG666625
Upstream geneUst, Sash1, LOC100039173
Downstream geneLOC666636, E130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215K16.bB6Ng01-215K16.g
ACCGA032563GA032564
length1,0371,109
definitionB6Ng01-215K16.b B6Ng01-215K16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,034,653 - 9,035,680)(8,891,943 - 8,893,050)
sequence
gaattcagaatgaggtaggcggaccaagcagtggacccgggacagaagat
cacaggtggcatctgctgctgccgtctcacccctaccacaattccgatgc
cacaaaactgagcaaatgagagtaatgagaggcttgatcccattaccctg
ccttggcttcaccgccactcatacatctcaaaataataataaaagcacat
ggtgtcagaacataggagatcgaaaaccagaaagagctgccagctaatct
gaccttggctttgagagaaaaatcagatcacctaaaagatagaatgattg
gcttctggtggtgtccgggcaaacagcatgctactatcagggagatttgt
aaggacaatgggcaatcagcactcagagttcattagcagtaggcagaagg
aacatgttatgtttgctttagcaaatctattgtcttctaaggtttccctc
cagtctcatgtaacctctctggcattaacatgttctctatataacctgac
ttctcaaggactttgaggaacataactacttttctgctgctttataaaat
ccccagataggtccaacaagatgtgatgaccggcaacttcgtaagatttt
gttccttgtagaagatgaacctgtaggtatatctgtagaagattatctaa
attaggttcattgaggtgggtagacccactctgaatgggggtggcaccat
gccgagggctgtggttgtagaacatggaaaggggtggtttgctgagagcc
agtattcctctctctctctctctctctctctctctctctctctctctctc
tctctctctgtctcttgatagcggatgcaatatcaccacgcccccttttt
ctcctattaccatggtttttcctcctgtccacaaactttagaaactatgg
gccaagaataactctttctttactttgagttggcttttgccagggattgt
atcacagtagtgagaaaaataactaagatgaatagtcttggaagaactct
ttcccatttggctgaagttgaagagtaaatcctatga

gaattcatgtcctcatgatgcatagcaatcatgtcacctgctgaaccatc
tattttctgctgtagactgatgtttcttgtcaagcaggtatttatttata
aagcattttcttttaatttaaaaagtcaatgaattccaatttattatttt
ccttttatacactgcacgcttggtgttaaatacaagagctcttggcatgg
tcctagatggtgaggatttttcttttaaatttagttttacattttccatg
taagttcttgatctatttttgtgttaacattttatggtgtgcaagactta
agtctgggttcatttttgtcacatgtggacatccaactgcttcggcacca
tttctggaaacagtgtctttactctactgaatgcctttgcacctttgtca
aaagtcaattgtacatgcctgtgtgagtctctttcaggctctctattctg
atccattgatctgtgtgtctgggaccagatatctttgccttcttgcggat
cttagcaggaaagtattctgtgtctcacaatcaagtgcaaacttagctga
atgctttggtgggtgatctttatcaagttgaagatattcctctccgtttc
tatcatcttcagaaactctttttaaaaaaaatcaagacttggtcctcact
ttgcccgaaggcctttctgtatcaattgtagtttttcttctcatgtaatt
ttttttcttctttggcccaacaataaggttggctgtattgagccttttct
cctttgaataaacaactgaacttacttgtgatatataactatttttagat
tattgagatcatttgttaatattttggtctgaagttttgtgtaactatga
taaacattgatttatagggtttttaaaatttatttgtctggtttttatat
agagctaggttcataaaagttcttcgagagtgtttcttcctcattatttt
tctaggaaaaaattatttttgggttgccttcatgttaatctttagaagct
ttgggatgcattcaggcaatgagtatgaatatacctggtgactggtggtg
ttatccctttacctacattggctctctctccagtgttctaggaggagcga
ttatgtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_9034653_9035680
seq2: B6Ng01-215K16.b_47_1083 (reverse)

seq1  TCATA-GATTTACTACTTCAAACTTCAG-CAAATGTGGAAAGAG-TCCTC  47
      ||||| |||||||| |||| |||||||| |||||| |||||||| || ||
seq2  TCATAGGATTTACT-CTTC-AACTTCAGCCAAATG-GGAAAGAGTTCTTC  47

seq1  CAAG-CTTATCATCTTAGTTATTTTTCTCACTACTGTGATACAATCCCTG  96
      |||| ||  |||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTATTCATCTTAGTTATTTTTCTCACTACTGTGATACAATCCCTG  97

seq1  GCAAA--GCAACTC-AAGTAAGGAAGAAGTTATTC-TGGCCCATAG-TTC  141
      |||||   |||||| |||||| |||  |||||||| |||||||||| |||
seq2  GCAAAAGCCAACTCAAAGTAAAGAAAGAGTTATTCTTGGCCCATAGTTTC  147

seq1  TGAAGTTTGT-GACAGGAGGAAAAACCATGGTAATAGGAG-AAAAGGGGG  189
      | |||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  TAAAGTTTGTGGACAGGAGGAAAAACCATGGTAATAGGAGAAAAAGGGGG  197

seq1  C-TGGTTATATTGCATCCACTATCAGGAGGCAGAGAGAGAGAGAGAGAGA  238
      | |||| ||||||||||| |||||| ||| ||||||||||||||||||||
seq2  CGTGGTGATATTGCATCCGCTATCAAGAGACAGAGAGAGAGAGAGAGAGA  247

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATACTGGCTCTCAGC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATACTGGCTCTCAGC  297

seq1  AAACCACCCCTTTCCATGTTCTACAACCACAGCCCTCGGCATGGTGCCAC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACCCCTTTCCATGTTCTACAACCACAGCCCTCGGCATGGTGCCAC  347

seq1  CCCCATTCAGAGTGGGTCTACCCACCTCAATGAACCTAATTTAGATAATC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTCAGAGTGGGTCTACCCACCTCAATGAACCTAATTTAGATAATC  397

seq1  TTCTACAGATATACCTACAGGTTCATCTTCTACAAGGAACAAAATCTTAC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAGATATACCTACAGGTTCATCTTCTACAAGGAACAAAATCTTAC  447

seq1  GAAGTTGCCGGTCATCACATCTTGTTGGACCTATCTGGGGATTTTATAAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGCCGGTCATCACATCTTGTTGGACCTATCTGGGGATTTTATAAA  497

seq1  GCAGCAGAAAAGTAGTTATGTTCCTCAAAGTCCTTGAGAAGTCAGGTTAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGAAAAGTAGTTATGTTCCTCAAAGTCCTTGAGAAGTCAGGTTAT  547

seq1  ATAGAGAACATGTTAATGCCAGAGAGGTTACATGAGACTGGAGGGAAACC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAACATGTTAATGCCAGAGAGGTTACATGAGACTGGAGGGAAACC  597

seq1  TTAGAAGACAATAGATTTGCTAAAGCAAACATAACATGTTCCTTCTGCCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGACAATAGATTTGCTAAAGCAAACATAACATGTTCCTTCTGCCT  647

seq1  ACTGCTAATGAACTCTGAGTGCTGATTGCCCATTGTCCTTACAAATCTCC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAATGAACTCTGAGTGCTGATTGCCCATTGTCCTTACAAATCTCC  697

seq1  CTGATAGTAGCATGCTGTTTGCCCGGACACCACCAGAAGCCAATCATTCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGTAGCATGCTGTTTGCCCGGACACCACCAGAAGCCAATCATTCT  747

seq1  ATCTTTTAGGTGATCTGATTTTTCTCTCAAAGCCAAGGTCAGATTAGCTG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTAGGTGATCTGATTTTTCTCTCAAAGCCAAGGTCAGATTAGCTG  797

seq1  GCAGCTCTTTCTGGTTTTCGATCTCCTATGTTCTGACACCATGTGCTTTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCTTTCTGGTTTTCGATCTCCTATGTTCTGACACCATGTGCTTTT  847

seq1  ATTATTATTTTGAGATGTATGAGTGGCGGTGAAGCCAAGGCAGGGTAATG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTTTGAGATGTATGAGTGGCGGTGAAGCCAAGGCAGGGTAATG  897

seq1  GGATCAAGCCTCTCATTACTCTCATTTGCTCAGTTTTGTGGCATCGGAAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAGCCTCTCATTACTCTCATTTGCTCAGTTTTGTGGCATCGGAAT  947

seq1  TGTGGTAGGGGTGAGACGGCAGCAGCAGATGCCACCTGTGATCTTCTGTC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTAGGGGTGAGACGGCAGCAGCAGATGCCACCTGTGATCTTCTGTC  997

seq1  CCGGGTCCACTGCTTGGTCCGCCTACCTCATTCTGAATTC  1028
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTCCACTGCTTGGTCCGCCTACCTCATTCTGAATTC  1037


seq1: chr10_8891943_8893050
seq2: B6Ng01-215K16.g_67_1175

seq1  GAATTCATGTCCTCATGATGCATAGCAATCATGTCACCTGCTGAACCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTCCTCATGATGCATAGCAATCATGTCACCTGCTGAACCATC  50

seq1  TATTTTCTGCTGTAGACTGATGTTTCTTGTCAAGCAGGTATTTATTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGCTGTAGACTGATGTTTCTTGTCAAGCAGGTATTTATTTATA  100

seq1  AAGCATTTTCTTTTAATTTAAAAAGTCAATGAATTCCAATTTATTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTTCTTTTAATTTAAAAAGTCAATGAATTCCAATTTATTATTTT  150

seq1  CCTTTTATACACTGCACGCTTGGTGTTAAATACAAGAGCTCTTGGCATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATACACTGCACGCTTGGTGTTAAATACAAGAGCTCTTGGCATGG  200

seq1  TCCTAGATGGTGAGGATTTTTCTTTTAAATTTAGTTTTACATTTTCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGATGGTGAGGATTTTTCTTTTAAATTTAGTTTTACATTTTCCATG  250

seq1  TAAGTTCTTGATCTATTTTTGTGTTAACATTTTATGGTGTGCAAGACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCTTGATCTATTTTTGTGTTAACATTTTATGGTGTGCAAGACTTA  300

seq1  AGTCTGGGTTCATTTTTGTCACATGTGGACATCCAACTGCTTCGGCACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGTTCATTTTTGTCACATGTGGACATCCAACTGCTTCGGCACCA  350

seq1  TTTCTGGAAACAGTGTCTTTACTCTACTGAATGCCTTTGCACCTTTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAAACAGTGTCTTTACTCTACTGAATGCCTTTGCACCTTTGTCA  400

seq1  AAAGTCAATTGTACATGCCTGTGTGAGTCTCTTTCAGGCTCTCTATTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAATTGTACATGCCTGTGTGAGTCTCTTTCAGGCTCTCTATTCTG  450

seq1  ATCCATTGATCTGTGTGTCTGGGACCAGATATCTTTGCCTTCTTGCGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTGATCTGTGTGTCTGGGACCAGATATCTTTGCCTTCTTGCGGAT  500

seq1  CTTAGCAGGAAAGTATTCTGTGTCTCACAATCAAGTGCAAACTTAGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAGGAAAGTATTCTGTGTCTCACAATCAAGTGCAAACTTAGCTGA  550

seq1  ATGCTTTGGTGGGTGATCTTTATCAAGTTGAAGATATTCCTCTCCGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTGGTGGGTGATCTTTATCAAGTTGAAGATATTCCTCTCCGTTTC  600

seq1  TATCATCTTCAGAAACTCTTTTTAAAAAAAATCAAGACTTGGTCCTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTTCAGAAACTCTTTTTAAAAAAAATCAAGACTTGGTCCTCACT  650

seq1  TTGCCCGAAGGCCTTTCTGTATCAATTGTAGTTTTTCTTCTCATGTAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCGAAGGCCTTTCTGTATCAATTGTAGTTTTTCTTCTCATGTAATT  700

seq1  TTTTTTCTTCTTTGGCCCAACAATAAGGTTGGCTGTATTGAGCCTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTCTTTGGCCCAACAATAAGGTTGGCTGTATTGAGCCTTTTCT  750

seq1  CCTTTGAATAAACAACTGAACTTACTTGTGATATATAACTATTTTTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAATAAACAACTGAACTTACTTGTGATATATAACTATTTTTAGAT  800

seq1  TATTGAGATCATTTGTTAATATTTTGGTCTGAAGTTTTGTGTAACTATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGATCATTTGTTAATATTTTGGTCTGAAGTTTTGTGTAACTATGA  850

seq1  TAAACATTGATTTATAGGGTTTTTAAAATTTATTTGTCTGGTTTTAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAAACATTGATTTATAGGGTTTTTAAAATTTATTTGTCTGGTTTTTATAT  900

seq1  AGAGCTAGGTTCATAAAAGTTC-TCGAGAGGTGTTTCTTCCTCAT--ATT  947
      |||||||||||||||||||||| |||||| |||||||||||||||   ||
seq2  AGAGCTAGGTTCATAAAAGTTCTTCGAGA-GTGTTTCTTCCTCATTATTT  949

seq1  TTCTAGAAAAATA----TTTTGGGTTGCCTTCATGTTAATTCTTTAGAAG  993
      |||||| |||| |    |||||||||||||||||||||| ||||||||||
seq2  TTCTAGGAAAAAATTATTTTTGGGTTGCCTTCATGTTAA-TCTTTAGAAG  998

seq1  CTTT-GGATGCATTCAGCCATTGAGTATTGATATAACCTTGGTGACTGGT  1042
      |||| |||||||||||| || |||||||  |||||  | |||||||||||
seq2  CTTTGGGATGCATTCAGGCAATGAGTATGAATATA--CCTGGTGACTGGT  1046

seq1  GGTGTTTATCCCTTTACCTACATTGGCTCTCTCTCCAGTTGTTCTAAGGA  1092
      |||| ||||||||||||||||||||||||||||||||| |||||| ||||
seq2  GGTG-TTATCCCTTTACCTACATTGGCTCTCTCTCCAG-TGTTCT-AGGA  1093

seq1  GGAGCGATTATGTCTC  1108
      ||||||||||||||||
seq2  GGAGCGATTATGTCTC  1109


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