BAC Information

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BAC

Clone NameB6Ng01-215K22
Chromosome10 (Build37)
Map Location 40,000,309 - 40,142,873
singlet/doubletdoublet
Overlap geneAmd1, Amd2, LOC668051, Cdc2l6, LOC666374
Upstream geneFyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik
Downstream geneSlc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1, Gpr6, A530089I17Rik, LOC633979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215K22.bB6Ng01-215K22.g
ACCGA032575GA032576
length1,0571,055
definitionB6Ng01-215K22.b B6Ng01-215K22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,141,819 - 40,142,873)(40,000,309 - 40,001,357)
sequence
gaattcctactagatggatcagattctattgaaggtatttataaacaaca
aaaggttagctttcactattgaaactttaaatggcacagtcagcatcatg
tctgtctcaaaccctggttgcagcaagggagccgtcacgtgtgggctgta
aatacttttaaaactaactgaaggacaaacagctaggatacaacccaagc
aaagtggccttcaacaggcaaggaacagaagccagcaggccgtgactaga
gagtcactaagggctcagagaagctctgcatcatttggctttgttacaac
aggagaaacaacaacattttaaaaatacagaaacagaaaaatatatagga
aaattagcttattctcaagatttcacagactcttccctaattatttgctc
actgtagcccaaactaacatgtaattaaagattctagtttttaacagaat
gaattctaaaatattaagtagcacataactatgacaaaatgaccttctag
caaataagcatgtcaatatagctagtaacccacatcgttcttcccagctg
cttctgtcagacagacagacagacacatacagacagacacagacacacac
gcccgtgcgcacacacatacacacgcacaccccaaaacaaagcaacaaaa
actgatgtccctttagttgggacagatactgtggaggatcggcagtgaag
acagagctaacgtcgcagcacaaggcccttcaggaaggtgctctatctaa
ccaagggcaaccttcaccatttcaattctgaaaatggtaacttggtaaga
ttataccattaaaaacaaaaacccaaacaacctcacataaactgttcaga
gcaccttatatctataatacctaataaagctcagcattttttagagctat
tatcaagcagaataatgatcctgggtcagtggtttctcttatcctgcaca
ttagtgacactgcagctccctacctgatcccagcattcttctggcagctt
cctgtctgctgcagtctgtgcacctctttttgtgggtgagggagttagaa
attgggg
gaattcactttatagaccaggctgggcttgaacttacagagatccaccta
tccctgcctcttgagggtgttgggactgagggagtgtgctgccattctgg
gctttatttctctaaagttgaggcatttcttccaggagtgacatagaata
gtgttgagggaagtgtggcaccttgactagaatgtctgatatccagtcac
tagctcgtcttctggattgtcagtctttagtagatagctatcacacaatg
tcctcatggcagcctgctctgtaccaggcaagcaagcactcactcaccta
gcctgcctttgaggatctccatccaggtgttggtggtggactcaggagct
tctggtgacctgtccttcaggtcctagcactgggcactggatattttcca
ttaacttcccaccaagtcagtgatctcgcttttaaacaagctaatgacct
cctctagcttttgtgagcatgtcctacagctgtgacatccttgctgcatg
tcacaatcttctcagtgttggctagttcagtcttcacttagattgcattt
attatcaattcattaattgattatcatgtctacgtgtgttttgcctgcat
gtataagcaatcattgcatgcctggtgcctgcaaaggccaaaagaaggcc
caggattcctaggaattggattagagatggttgtgagctgccatgaggat
gctgagaatcaaacctgcaacctctagaagagcggccagtgctctcaacg
atggagccatttctccggctgcttctttcttcctttctttctttctttcc
tttctttctttcttccttccttccttccttccttccttccttccttcctt
ccttcctttctttctctctctatctctccctctctctctctctctctttc
tttctttcttagatttttttcatttaaaaaaaatttttttttttcgagac
agggtttcctctgtgtagccctggctgtcctggaactaactctgtagatc
aggctgggcctcgaactcagaaatctcacctgcttcttgcctcccgaggt
gctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_40141819_40142873
seq2: B6Ng01-215K22.b_49_1105 (reverse)

seq1  CCCCA--TTCTAACCTCCCTCACCCAC-AAAAGAGGTGCACAGACTGCAG  47
      |||||  |||||| ||||||||||||| ||||||||||||||||||||||
seq2  CCCCAATTTCTAA-CTCCCTCACCCACAAAAAGAGGTGCACAGACTGCAG  49

seq1  CAGACAGGAAGCTGCCAGAAGAATGCTGGGATCAGGTAGGGAGCTGCAGT  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGAAGCTGCCAGAAGAATGCTGGGATCAGGTAGGGAGCTGCAGT  99

seq1  GTCACTAATGTGCAGGATAAGAGAAACCACTGACCCAGGATCATTATTCT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTAATGTGCAGGATAAGAGAAACCACTGACCCAGGATCATTATTCT  149

seq1  GCTTGATAATAGCTCTAAAAAATGCTGAGCTTTATTAGGTATTATAGATA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATAATAGCTCTAAAAAATGCTGAGCTTTATTAGGTATTATAGATA  199

seq1  TAAGGTGCTCTGAACAGTTTATGTGAGGTTGTTTGGGTTTTTGTTTTTAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGCTCTGAACAGTTTATGTGAGGTTGTTTGGGTTTTTGTTTTTAA  249

seq1  TGGTATAATCTTACCAAGTTACCATTTTCAGAATTGAAATGGTGAAGGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATAATCTTACCAAGTTACCATTTTCAGAATTGAAATGGTGAAGGTT  299

seq1  GCCCTTGGTTAGATAGAGCACCTTCCTGAAGGGCCTTGTGCTGCGACGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGGTTAGATAGAGCACCTTCCTGAAGGGCCTTGTGCTGCGACGTT  349

seq1  AGCTCTGTCTTCACTGCCGATCCTCCACAGTATCTGTCCCAACTAAAGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTCTTCACTGCCGATCCTCCACAGTATCTGTCCCAACTAAAGGG  399

seq1  ACATCAGTTTTTGTTGCTTTGTTTTGGGGTGTGCGTGTGTATGTGTGTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTTTTTGTTGCTTTGTTTTGGGGTGTGCGTGTGTATGTGTGTGC  449

seq1  GCACGGGCGTGTGTGTCTGTGTCTGTCTGTATGTGTCTGTCTGTCTGTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGGCGTGTGTGTCTGTGTCTGTCTGTATGTGTCTGTCTGTCTGTCT  499

seq1  GACAGAAGCAGCTGGGAAGAACGATGTGGGTTACTAGCTATATTGACATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGCAGCTGGGAAGAACGATGTGGGTTACTAGCTATATTGACATG  549

seq1  CTTATTTGCTAGAAGGTCATTTTGTCATAGTTATGTGCTACTTAATATTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTGCTAGAAGGTCATTTTGTCATAGTTATGTGCTACTTAATATTT  599

seq1  TAGAATTCATTCTGTTAAAAACTAGAATCTTTAATTACATGTTAGTTTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTCATTCTGTTAAAAACTAGAATCTTTAATTACATGTTAGTTTGG  649

seq1  GCTACAGTGAGCAAATAATTAGGGAAGAGTCTGTGAAATCTTGAGAATAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTGAGCAAATAATTAGGGAAGAGTCTGTGAAATCTTGAGAATAA  699

seq1  GCTAATTTTCCTATATATTTTTCTGTTTCTGTATTTTTAAAATGTTGTTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTTTCCTATATATTTTTCTGTTTCTGTATTTTTAAAATGTTGTTG  749

seq1  TTTCTCCTGTTGTAACAAAGCCAAATGATGCAGAGCTTCTCTGAGCCCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTGTTGTAACAAAGCCAAATGATGCAGAGCTTCTCTGAGCCCTT  799

seq1  AGTGACTCTCTAGTCACGGCCTGCTGGCTTCTGTTCCTTGCCTGTTGAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTCTCTAGTCACGGCCTGCTGGCTTCTGTTCCTTGCCTGTTGAAG  849

seq1  GCCACTTTGCTTGGGTTGTATCCTAGCTGTTTGTCCTTCAGTTAGTTTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTTGCTTGGGTTGTATCCTAGCTGTTTGTCCTTCAGTTAGTTTTA  899

seq1  AAAGTATTTACAGCCCACACGTGACGGCTCCCTTGCTGCAACCAGGGTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTTACAGCCCACACGTGACGGCTCCCTTGCTGCAACCAGGGTTT  949

seq1  GAGACAGACATGATGCTGACTGTGCCATTTAAAGTTTCAATAGTGAAAGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGACATGATGCTGACTGTGCCATTTAAAGTTTCAATAGTGAAAGC  999

seq1  TAACCTTTTGTTGTTTATAAATACCTTCAATAGAATCTGATCCATCTAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTTTGTTGTTTATAAATACCTTCAATAGAATCTGATCCATCTAGT  1049

seq1  AGGAATTC  1055
      ||||||||
seq2  AGGAATTC  1057

seq1: chr10_40000309_40001357
seq2: B6Ng01-215K22.g_68_1122

seq1  GAATTCACTTTATAGACCAGGCTGGGCTTGAACTTACAGAGATCCACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTATAGACCAGGCTGGGCTTGAACTTACAGAGATCCACCTA  50

seq1  TCCCTGCCTCTTGAGGGTGTTGGGACTGAGGGAGTGTGCTGCCATTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCCTCTTGAGGGTGTTGGGACTGAGGGAGTGTGCTGCCATTCTGG  100

seq1  GCTTTATTTCTCTAAAGTTGAGGCATTTCTTCCAGGAGTGACATAGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTTCTCTAAAGTTGAGGCATTTCTTCCAGGAGTGACATAGAATA  150

seq1  GTGTTGAGGGAAGTGTGGCACCTTGACTAGAATGTCTGATATCCAGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAGGGAAGTGTGGCACCTTGACTAGAATGTCTGATATCCAGTCAC  200

seq1  TAGCTCGTCTTCTGGATTGTCAGTCTTTAGTAGATAGCTATCACACAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCGTCTTCTGGATTGTCAGTCTTTAGTAGATAGCTATCACACAATG  250

seq1  TCCTCATGGCAGCCTGCTCTGTACCAGGCAAGCAAGCACTCACTCACCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATGGCAGCCTGCTCTGTACCAGGCAAGCAAGCACTCACTCACCTA  300

seq1  GCCTGCCTTTGAGGATCTCCATCCAGGTGTTGGTGGTGGACTCAGGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTTTGAGGATCTCCATCCAGGTGTTGGTGGTGGACTCAGGAGCT  350

seq1  TCTGGTGACCTGTCCTTCAGGTCCTAGCACTGGGCACTGGATATTTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGACCTGTCCTTCAGGTCCTAGCACTGGGCACTGGATATTTTCCA  400

seq1  TTAACTTCCCACCAAGTCAGTGATCTCGCTTTTAAACAAGCTAATGACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTCCCACCAAGTCAGTGATCTCGCTTTTAAACAAGCTAATGACCT  450

seq1  CCTCTAGCTTTTGTGAGCATGTCCTACAGCTGTGACATCCTTGCTGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGCTTTTGTGAGCATGTCCTACAGCTGTGACATCCTTGCTGCATG  500

seq1  TCACAATCTTCTCAGTGTTGGCTAGTTCAGTCTTCACTTAGATTGCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATCTTCTCAGTGTTGGCTAGTTCAGTCTTCACTTAGATTGCATTT  550

seq1  ATTATCAATTCATTAATTGATTATCATGTCTACGTGTGTTTTGCCTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAATTCATTAATTGATTATCATGTCTACGTGTGTTTTGCCTGCAT  600

seq1  GTATAAGCAATCATTGCATGCCTGGTGCCTGCAAAGGCCAAAAGAAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGCAATCATTGCATGCCTGGTGCCTGCAAAGGCCAAAAGAAGGCC  650

seq1  CAGGATTCCTAGGAATTGGATTAGAGATGGTTGTGAGCTGCCATGAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTCCTAGGAATTGGATTAGAGATGGTTGTGAGCTGCCATGAGGAT  700

seq1  GCTGAGAATCAAACCTGCAACCTCTAGAAGAGCGGCCAGTGCTCTCAACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAATCAAACCTGCAACCTCTAGAAGAGCGGCCAGTGCTCTCAACG  750

seq1  ATGGAGCCATTTCTCCGGCTGCTTCTTTCTTCCTTTCTTTCTTTCTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCCATTTCTCCGGCTGCTTCTTTCTTCCTTTCTTTCTTTCTTTCC  800

seq1  TTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  850

seq1  CCTTCCTTTCTTTCTCTCTCTATCTCTCCCTCTCTCTCTCTCTCTCTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTTCTTTCTCTCTCTATCTCTCCCTCTCTCTCTCTCTCTCTTTC  900

seq1  TTTCTTTCTTAGATTTTTTTCATTTAAAAAAAA-TTTTTTTTTTCGAGAC  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTCTTTCTTAGATTTTTTTCATTTAAAAAAAATTTTTTTTTTTCGAGAC  950

seq1  AGGGTTT-CTCTGTGTAGCCCTGGCTGTCCTGGAACTAACTCTGTAGATC  998
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCCTCTGTGTAGCCCTGGCTGTCCTGGAACTAACTCTGTAGATC  1000

seq1  AGGCT-GGCCTCGAACTCAGAAATC-CACCTGCCTC-TGCCTCCCGA-GT  1044
      ||||| ||||||||||||||||||| ||||||| || |||||||||| ||
seq2  AGGCTGGGCCTCGAACTCAGAAATCTCACCTGCTTCTTGCCTCCCGAGGT  1050

seq1  GCTGG  1049
      |||||
seq2  GCTGG  1055