BAC Information

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BAC

Clone NameB6Ng01-216D21
Chromosome10 (Build37)
Map Location 33,118,244 - 33,266,365
singlet/doubletdoublet
Overlap geneTrdn, A330019N05Rik
Upstream geneTcba1, EG667761
Downstream geneLOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216D21.bB6Ng01-216D21.g
ACCGA032983GA032984
length1,0191,098
definitionB6Ng01-216D21.b B6Ng01-216D21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,118,244 - 33,119,258)(33,265,255 - 33,266,365)
sequence
gaattcatttactataccagcataattgtaagtgagagtatctgaaaagg
tgccttgtacatttggcaaattatcttcacaattgtgcaaaccataatta
cacagtctgttaataatatcatactttaaaaatactagcatttataagga
tgtgagagaaggaggaaggcaattataaaggacagaaattgtttaaactt
ttcatggcagtagaaggattaagaaaacatatgtgtcctataggatttct
gacaacacagagcctgacataatctcatacatagttaacatatgatgctg
gatttcatatactatcacctgtagtatttttaacttttatttttgttata
atttaattatattttccctcccctttcttccctctcaaaactctcatgtg
ctctccccttcaaatatgtagtctcctttttagtaattattatttcatgc
atgtgtctacttatacatacaaatgtattcttaaatataacctgttagaa
ccatgtaatctaatgtagatcagaagatagctagattttgaatatcaatg
aagaggttctccaatatttaaacctctcctaaacagaacttgggaaaaaa
aatcttatgataaaataatatgttgttttatgatttctttctcatgatct
cttctagaagtgaaaaaagaaaagtctgggaagagttcttcagatttgaa
agataaaggtaatagaattcatttactataccagcataattttaagtgag
agtatctgaaaacgtgccttgtacatttggggcattatcttcacagttct
gcaaaccataattacacagtctgtttataatatcatactttttaaaatac
tagcatttgtaaagatgtgggagaggggaaaggcagttataaaggataga
agggattcccttaacataagttattatggataataagatagaaaaaaagt
cttaatggggtcttgtcctctacagccgctaactcctcccctttctaaca
atctaatatcattctaatc
gaattcccatatatatgtcctatgaggatcaatccctttgttttccaacc
cattatttgcatccattaatgattactaattataagactggcacagaaaa
agacattcctattagctggaaatggactagtttcttgatagtatcttttc
agtttggcagaacacatagacactggaatgtttgtgctaaaaccaggttg
tggaagtgagtggacaacttgtctgaattctctgtccagaaacaatgatg
tggattgtgaacaattaccaatttgagttctttcaggaatctgacatttc
agcagatgagatatacttagtataatctataaaatatgggtttagtattt
tccatactatcccaaaatgatagatccataagatgtattaagggaagcaa
tatggttagcatgtcaaagcacagaaattgtggtaggtttaaacacagtg
gaagaggactactagagaggctggaggagaaccagatataccaacttcta
tagtaattatgtgtacttcctacattatggtacagaagataatattatgt
gtgtggtatatacatggctattatgaataactattattacagctctcttc
tttatatagaacttctttatagagttctatgtcatatgtacaatgcttaa
tttaataagatttgaaacatagacgaagatatttataacagtccttttgt
ttttaaatgctgagaacatgaatggtgctttaaatagtattttaaaaata
gtctattctaaaaacatccatcatatttataacaaaaggatcataatgaa
gcaatgatttgtatcctagtaaaagtttaagagtagatgtatgaaccagg
catgttggtacatgcctataatatctcgatggagagtgatgaaagattgc
aagttcaaagtctccctggaatatggagtgagttcaataggtaatttaga
cagactttgcctcaaaatcatgacaaagttagtgagtgtgagtggggaga
catgtagaatgttatcgatggagcaatgaagacaaatatgttgtatacta
cttataaaattaattaggctgcaggcaaagtaggtgagtgctaaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_33118244_33119258
seq2: B6Ng01-216D21.b_47_1065

seq1  GAATTCATTTACTATACCAGCATAATTGTAAGTGAGAGTATCTGAAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTACTATACCAGCATAATTGTAAGTGAGAGTATCTGAAAAGG  50

seq1  TGCCTTGTACATTTGGCAAATTATCTTCACAATTGTGCAAACCATAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTACATTTGGCAAATTATCTTCACAATTGTGCAAACCATAATTA  100

seq1  CACAGTCTGTTAATAATATCATACTTTAAAAATACTAGCATTTATAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCTGTTAATAATATCATACTTTAAAAATACTAGCATTTATAAGGA  150

seq1  TGTGAGAGAAGGAGGAAGGCAATTATAAAGGACAGAAATTGTTTAAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGAAGGAGGAAGGCAATTATAAAGGACAGAAATTGTTTAAACTT  200

seq1  TTCATGGCAGTAGAAGGATTAAGAAAACATATGTGTCCTATAGGATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGCAGTAGAAGGATTAAGAAAACATATGTGTCCTATAGGATTTCT  250

seq1  GACAACACAGAGCCTGACATAATCTCATACATAGTTAACATATGATGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACACAGAGCCTGACATAATCTCATACATAGTTAACATATGATGCTG  300

seq1  GATTTCATATACTATCACCTGTAGTATTTTTAACTTTTATTTTTGTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCATATACTATCACCTGTAGTATTTTTAACTTTTATTTTTGTTATA  350

seq1  ATTTAATTATATTTTCCCTCCCCTTTCTTCCCTCTCAAAACTCTCATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTATATTTTCCCTCCCCTTTCTTCCCTCTCAAAACTCTCATGTG  400

seq1  CTCTCCCCTTCAAATATGTAGTCTCCTTTTTAGTAATTATTATTTCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCTTCAAATATGTAGTCTCCTTTTTAGTAATTATTATTTCATGC  450

seq1  ATGTGTCTACTTATACATACAAATGTATTCTTAAATATAACCTGTTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTACTTATACATACAAATGTATTCTTAAATATAACCTGTTAGAA  500

seq1  CCATGTAATCTAATGTAGATCAGAAGATAGCTAGATTTTGAATATCAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAATCTAATGTAGATCAGAAGATAGCTAGATTTTGAATATCAATG  550

seq1  AAGAGGTTCTCCAATATTTAAACCTCTCCTAAACAGAACTTGGGAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTTCTCCAATATTTAAACCTCTCCTAAACAGAACTTGGGAAAAAA  600

seq1  AATCTTATGATAAAATAATATGTTGTTTTATGATTTCTTTCTCATGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATGATAAAATAATATGTTGTTTTATGATTTCTTTCTCATGATCT  650

seq1  CTTCTAGAAGTGAAAAAAGAAAAGTCTGGGAAGAGTTCTTCAGATTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGAAGTGAAAAAAGAAAAGTCTGGGAAGAGTTCTTCAGATTTGAA  700

seq1  AGATAAAGGTAATAGAATTCATTTACTATACCAGCATAATTTTAAGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGGTAATAGAATTCATTTACTATACCAGCATAATTTTAAGTGAG  750

seq1  AGTATCTGAAAACGTGCCTTGTACATTTGGGGCATTATCTTCACAGTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTGAAAACGTGCCTTGTACATTTGGGGCATTATCTTCACAGTTCT  800

seq1  GCAAACCATAATTACACAGTCTGTTTATAATATCATAC-TTTTAAAATAC  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCAAACCATAATTACACAGTCTGTTTATAATATCATACTTTTTAAAATAC  850

seq1  TAGCATTTGTAAAGATGTGGGAGAGGGGAAAGGCAGTTATAAAGGATAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTTGTAAAGATGTGGGAGAGGGGAAAGGCAGTTATAAAGGATAGA  900

seq1  AGGGATTTCCTTAACAATAAG-TATTATGGATAATAAGATAAGAAAAAAA  948
      ||||||| ||||||| ||||| |||||||||||||||||| |||||||||
seq2  AGGGATTCCCTTAAC-ATAAGTTATTATGGATAATAAGAT-AGAAAAAAA  948

seq1  GTCTTAATGGGGTCTTGT-CTCTACAGCCGCTAACT-CTCCCCTTTCTAA  996
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  GTCTTAATGGGGTCTTGTCCTCTACAGCCGCTAACTCCTCCCCTTTCTAA  998

seq1  C-ATCTAATATCA-TCTAATC  1015
      | ||||||||||| |||||||
seq2  CAATCTAATATCATTCTAATC  1019

seq1: chr10_33265255_33266365
seq2: B6Ng01-216D21.g_67_1164 (reverse)

seq1  GCATTCTAGCACTCACCTAC-TTCCCTGCAGCCTTATTTTAAATTTTTTA  49
      ||||| |||||||||||||| || |||||||||| |||   ||||||   
seq2  GCATT-TAGCACTCACCTACTTTGCCTGCAGCCTAATT---AATTTT---  43

seq1  TTAAATAGTTTTACAACATTTTTTCTCCTTCCTTTCCTCCCTTCGAT-AC  98
       ||| ||| | |||||||| |||    |||| || |   || ||||| ||
seq2  ATAAGTAG-TATACAACATATTT--GTCTTCATTGC--TCCATCGATAAC  88

seq1  ATTCTACATGTCTCCCCAACTCACACTCACTACTTTTGTCATTAATTTTG  148
      ||||||||||||||||| ||||||||||||||  ||||||| | ||||||
seq2  ATTCTACATGTCTCCCC-ACTCACACTCACTAACTTTGTCA-TGATTTTG  136

seq1  AGGCAAAGTCTGTCTAAATTACCTATTGAACTCACTCCATATTCCAGGGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGTCTGTCTAAATTACCTATTGAACTCACTCCATATTCCAGGGA  186

seq1  GACTTTGAACTTGCAATCTTTCATCACTCTCCCATCGAGATATTATAGGC  248
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GACTTTGAACTTGCAATCTTTCATCACTCT-CCATCGAGATATTATAGGC  235

seq1  ATGTACCAACATGCCTGGTTCATACATCTACTCTTAAACTTTTACTAGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCAACATGCCTGGTTCATACATCTACTCTTAAACTTTTACTAGGA  285

seq1  TACAAATCATTGCTTCATTATGATCCTTTTGTTATAAATATGATGGATGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATCATTGCTTCATTATGATCCTTTTGTTATAAATATGATGGATGT  335

seq1  TTTTAGAATAGACTATTTTTAAAATACTATTTAAAGCACCATTCATGTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAATAGACTATTTTTAAAATACTATTTAAAGCACCATTCATGTTC  385

seq1  TCAGCATTTAAAAACAAAAGGACTGTTATAAATATCTTCGTCTATGTTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTTAAAAACAAAAGGACTGTTATAAATATCTTCGTCTATGTTTC  435

seq1  AAATCTTATTAAATTAAGCATTGTACATATGACATAGAACTCTATAAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTATTAAATTAAGCATTGTACATATGACATAGAACTCTATAAAGA  485

seq1  AGTTCTATATAAAGAAGAGAGCTGTAATAATAGTTATTCATAATAGCCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTATATAAAGAAGAGAGCTGTAATAATAGTTATTCATAATAGCCAT  535

seq1  GTATATACCACACACATAATATTATCTTCTGTACCATAATGTAGGAAGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATACCACACACATAATATTATCTTCTGTACCATAATGTAGGAAGTA  585

seq1  CACATAATTACTATAGAAGTTGGTATATCTGGTTCTCCTCCAGCCTCTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAATTACTATAGAAGTTGGTATATCTGGTTCTCCTCCAGCCTCTCT  635

seq1  AGTAGTCCTCTTCCACTGTGTTTAAACCTACCACAATTTCTGTGCTTTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCCTCTTCCACTGTGTTTAAACCTACCACAATTTCTGTGCTTTGA  685

seq1  CATGCTAACCATATTGCTTCCCTTAATACATCTTATGGATCTATCATTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAACCATATTGCTTCCCTTAATACATCTTATGGATCTATCATTTT  735

seq1  GGGATAGTATGGAAAATACTAAACCCATATTTTATAGATTATACTAAGTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGTATGGAAAATACTAAACCCATATTTTATAGATTATACTAAGTA  785

seq1  TATCTCATCTGCTGAAATGTCAGATTCCTGAAAGAACTCAAATTGGTAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCATCTGCTGAAATGTCAGATTCCTGAAAGAACTCAAATTGGTAAT  835

seq1  TGTTCACAATCCACATCATTGTTTCTGGACAGAGAATTCAGACAAGTTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACAATCCACATCATTGTTTCTGGACAGAGAATTCAGACAAGTTGT  885

seq1  CCACTCACTTCCACAACCTGGTTTTAGCACAAACATTCCAGTGTCTATGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCACTTCCACAACCTGGTTTTAGCACAAACATTCCAGTGTCTATGT  935

seq1  GTTCTGCCAAACTGAAAAGATACTATCAAGAAACTAGTCCATTTCCAGCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCCAAACTGAAAAGATACTATCAAGAAACTAGTCCATTTCCAGCT  985

seq1  AATAGGAATGTCTTTTTCTGTGCCAGTCTTATAATTAGTAATCATTAATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAATGTCTTTTTCTGTGCCAGTCTTATAATTAGTAATCATTAATG  1035

seq1  GATGCAAATAATGGGTTGGAAAACAAAGGGATTGATCCTCATAGGACATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAATAATGGGTTGGAAAACAAAGGGATTGATCCTCATAGGACATA  1085

seq1  TATATGGGAATTC  1111
      |||||||||||||
seq2  TATATGGGAATTC  1098