BAC Information

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BAC

Clone NameB6Ng01-216O23
Chromosome10 (Build37)
Map Location 55,328,022 - 55,549,724
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041898, LOC382460, LOC100041927
Downstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216O23.bB6Ng01-216O23.g
ACCGA033489GA033490
length1,126821
definitionB6Ng01-216O23.b B6Ng01-216O23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,328,022 - 55,329,143)(55,548,912 - 55,549,724)
sequence
tacccaagatggcgcagtgcagggctggtttatttcaaacttatttaaaa
tataaaacttattttagaagaaaacataagagacaacatggatcttgatt
aggaaaagtttttatacacatgacactgaaaatgcctctttccataaaaa
ttgcctaaaatttaaaaatgtatacactttagaagaaactgttgaacctt
tatgaaaacagaaacaggaaaatatttgaaacctggaagagggagagaat
gcagaagaggaggaggaagaagaaaggcagagcagaagcacatggcctgg
agaaaccacaagttctaaggggtctcatagatgtggaagatggtagtgta
gcagtagatctgcccaatctaggcatgcagtatctaatcatgtcaactct
gttgtgttttcattgcaggggcatatttgggttggagagctgtatcccaa
caaaatggcacccaacatattgatttgaattcaactaacctagggtaaaa
attcactgaccccccaacccctgaatggggcttgggcagtgacctaggct
gtagcagtatggatttgaagctgactagatttaaggggcctacagagaac
agcagagaggcatctatgcatgagagcacctttctgtgtttgcttctctg
tatctttcgctccccaccctgcctcccccatcttcaaagagggacacaga
taactcggatcttggatcttttcatactcagcttctccctgtgaataaat
aattgggagacaaaggtacaaagtactccggaccaggtaattcattttat
aaagagagaaatataaccttctgatacttgaagaaggtataaagatatac
tgctctaataagtcttacaagatactcatactctgtctaacatgggctcc
acgggaattttgggtttaaatcctggtttgacagctgtctcttatgagtt
gggatagtacttaagatggaaaatttcacctgcattcagaaccagatagg
gaatattagtcactgactcaagttagagagagcagtgatatcatctgcct
atgacaggtatttaattaatagaagcctggtggctcttaggtaagagagc
acaagaagaagagagttttataatag
gaattctctgtttagatctgtagctcattttttaaatttagttgttttct
tgatatagttttttgagttccttataaatttttgatagtagacttttatc
agatgtgtaagccataaatatcttctctcacattcacaggctgctcttta
tctgaatgatggtttcctttaccatacaaaacctttcagttccagtgaaa
gaccatgtattaattattgattaattataaatgatgcatgtgtgaatttt
atatcaaagggacatgtgtaaataactttatgcaaagaatataaaatgta
gaaaacagacatattcctttaaaaaagttattagtacagtaaaaaagaaa
tacaacaccccctaaatcattaagagagagaataaaaatggacaaaagat
ttgagtatgcacatcaccattagaaaaactcattataaacacaaatgaaa
atcacaatgaggtcaaaaatgaaagtccagaaaacatgatgtgacagaaa
ctgtgcagcataatcttatgcagctactttgtaagacatcaggattttgg
gtaaatttgaggatagttatttctataatcttggtttcttggtttctaga
aaaaacactcaaaaatattagtttgtatatttatcaatagtttgggcttg
tttgtctttttgaaacaggagctccccagtgcttagttaatgcaagcctt
gaacttgtggtaattatctgcattaacatcctaagagccaaattacagag
gtgtctttatgaatagcttaaataaataataaaaagactatgttcatata
tttcagaatttatattttgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_55328022_55329143
seq2: B6Ng01-216O23.b_53_1178

seq1  TACCCAAGATGGCGCAGTGCAGGGCTGGTTTATTTCAAACTTATTTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAGATGGCGCAGTGCAGGGCTGGTTTATTTCAAACTTATTTAAAA  50

seq1  TATAAAACTTATTTTAGAAGAAAACATAAGAGACAACATGGATCTTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACTTATTTTAGAAGAAAACATAAGAGACAACATGGATCTTGATT  100

seq1  AGGAAAAGTTTTTATACACATGACACTGAAAATGCCTCTTTCCATAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGTTTTTATACACATGACACTGAAAATGCCTCTTTCCATAAAAA  150

seq1  TTGCCTAAAATTTAAAAATGTATACACTTTAGAAGAAACTGTTGAACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTAAAATTTAAAAATGTATACACTTTAGAAGAAACTGTTGAACCTT  200

seq1  TATGAAAACAGAAACAGGAAAATATTTGAAACCTGGAAGAGGGAGAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAACAGAAACAGGAAAATATTTGAAACCTGGAAGAGGGAGAGAAT  250

seq1  GCAGAAGAGGAGGAGGAAGAAGAAAGGCAGAGCAGAAGCACATGGCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGAGGAGGAGGAAGAAGAAAGGCAGAGCAGAAGCACATGGCCTGG  300

seq1  AGAAACCACAAGTTCTAAGGGGTCTCATAGATGTGGAAGATGGTAGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCACAAGTTCTAAGGGGTCTCATAGATGTGGAAGATGGTAGTGTA  350

seq1  GCAGTAGATCTGCCCAATCTAGGCATGCAGTATCTAATCATGTCAACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGATCTGCCCAATCTAGGCATGCAGTATCTAATCATGTCAACTCT  400

seq1  GTTGTGTTTTCATTGCAGGGGCATATTTGGGTTGGAGAGCTGTATCCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTTTTCATTGCAGGGGCATATTTGGGTTGGAGAGCTGTATCCCAA  450

seq1  CAAAATGGCACCCAACATATTGATTTGAATTCAACTAACCTAGGGTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGCACCCAACATATTGATTTGAATTCAACTAACCTAGGGTAAAA  500

seq1  ATTCACTGACCCCCCAACCCCTGAATGGGGCTTGGGCAGTGACCTAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGACCCCCCAACCCCTGAATGGGGCTTGGGCAGTGACCTAGGCT  550

seq1  GTAGCAGTATGGATTTGAAGCTGACTAGATTTAAGGGGCCTACAGAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGTATGGATTTGAAGCTGACTAGATTTAAGGGGCCTACAGAGAAC  600

seq1  AGCAGAGAGGCATCTATGCATGAGAGCACCTTTCTGTGTTTGCTTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGAGGCATCTATGCATGAGAGCACCTTTCTGTGTTTGCTTCTCTG  650

seq1  TATCTTTCGCTCCCCACCCTGCCTCCCCCATCTTCAAAGAGGGACACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCGCTCCCCACCCTGCCTCCCCCATCTTCAAAGAGGGACACAGA  700

seq1  TAACTCGGATCTTGGATCTTTTCATACTCAGCTTCTCCCTGTGAATAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCGGATCTTGGATCTTTTCATACTCAGCTTCTCCCTGTGAATAAAT  750

seq1  AATTGGGAGACAAAGGTACAAAGTACTCCGGACCAGGTAATTCATTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGAGACAAAGGTACAAAGTACTCCGGACCAGGTAATTCATTTTAT  800

seq1  AAAGAGAGAAATATAACCTTCTGATACTTGAAGAAGGTATAAAGATATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGAAATATAACCTTCTGATACTTGAAGAAGGTATAAAGATATAC  850

seq1  TGCTCTAATAAGTCTTACAAGATACTCATACTCTGTCTAACATGGGCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAATAAGTCTTACAAGATACTCATACTCTGTCTAACATGGGCTCC  900

seq1  ACGGGAATTTTGGGTTTAAATCCTGGTTTGACAAGCTGTCTCTTATGAGT  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACGGGAATTTTGGGTTTAAATCCTGGTTTGAC-AGCTGTCTCTTATGAGT  949

seq1  TGGGATAGTACTTAAAGATGGAAAATTTCACCTGCATTTCAGAACCAGAT  1000
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  TGGGATAGTACTT-AAGATGGAAAATTTCACCTGCA-TTCAGAACCAGAT  997

seq1  AGGGAATATTAGTCACTGACTCCAAGTAGAGAGAGCAGTGATAATCATCT  1050
      |||||||||||||||||||||| |  |||||||||||||||| |||||||
seq2  AGGGAATATTAGTCACTGACTCAAGTTAGAGAGAGCAGTGAT-ATCATCT  1046

seq1  G-CTATGAACAGGTA-TTAATTAATAGAAGTCT-GTGGCTC-TAGGTAA-  1095
      | ||||| ||||||| |||||||||||||| || ||||||| ||||||| 
seq2  GCCTATG-ACAGGTATTTAATTAATAGAAGCCTGGTGGCTCTTAGGTAAG  1095

seq1  AGAGCATAAG----AGATAGATTTATAATAG  1122
      |||||| |||    ||| || ||||||||||
seq2  AGAGCACAAGAAGAAGAGAGTTTTATAATAG  1126

seq1: chr10_55548912_55549724
seq2: B6Ng01-216O23.g_70_890 (reverse)

seq1  TAC-AATTATAATTTCTGA---ATATG-ACATAGTTCTTTTATTTATTAT  45
      ||| || ||||| ||||||   ||||| |||||||  |||||||  ||||
seq2  TACAAAATATAAATTCTGAAATATATGAACATAGTCTTTTTATTATTTAT  50

seq1  TTAAGCTATTCAT-AAGACA-CTCTGTAATTTTGGCTCTTAGGATGTTAT  93
      ||||||||||||| |||||| |||||||| ||||||||||||||||||| 
seq2  TTAAGCTATTCATAAAGACACCTCTGTAA-TTTGGCTCTTAGGATGTTAA  99

seq1  GGCAGGATATTTACCACAAGTTCAAGGCTTGCATTAACTAAGCACTGGGG  143
       ||| |||| |||||||||||||||||||||||||||||||||||| |||
seq2  TGCA-GATAATTACCACAAGTTCAAGGCTTGCATTAACTAAGCACT-GGG  147

seq1  GAGCT-CTGTTTCAAAAAGACAAAACAAG-CCAAACTATTGATAAATATA  191
      ||||| ||||||||||||||| ||||||| ||||||||||||||||||||
seq2  GAGCTCCTGTTTCAAAAAGAC-AAACAAGCCCAAACTATTGATAAATATA  196

seq1  CAAACTAATA-TTTTGAGTG-TTTTTCTAGAAACCAAGAAACCAAGATTA  239
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  CAAACTAATATTTTTGAGTGTTTTTTCTAGAAACCAAGAAACCAAGATTA  246

seq1  TAGAAATAACTATCCTCAATTTTA-CCAAAATCCTGATGTCTTACAAAGT  288
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  TAGAAATAACTATCCTCAAATTTACCCAAAATCCTGATGTCTTACAAAGT  296

seq1  AGCTGCATAAGATTATGCTGCACAGTTTCTGTCACATCATGTTTTCTGGA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCATAAGATTATGCTGCACAGTTTCTGTCACATCATGTTTTCTGGA  346

seq1  CTTTCATTTTTGACCTCATTGTGATTTTCATTTGTGTTTATAATGAGTTT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTTTTGACCTCATTGTGATTTTCATTTGTGTTTATAATGAGTTT  396

seq1  TTCTAATGGTGATGTGCATACTCAAATCTTTTGTCCATTTTTATTCTCTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGGTGATGTGCATACTCAAATCTTTTGTCCATTTTTATTCTCTC  446

seq1  TCTTAATGATTTAGGGGGTGTTGTATTTCTTTTTTACTGTACTAATAACT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGATTTAGGGGGTGTTGTATTTCTTTTTTACTGTACTAATAACT  496

seq1  TTTTTAAAGGAATATGTCTGTTTTCTACATTTTATATTCTTTGCATAAAG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGGAATATGTCTGTTTTCTACATTTTATATTCTTTGCATAAAG  546

seq1  TTATTTACACATGTCCCTTTGATATAAAATTCACACATGCATCATTTATA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACACATGTCCCTTTGATATAAAATTCACACATGCATCATTTATA  596

seq1  ATTAATCAATAATTAATACATGGTCTTTCACTGGAACTGAAAGGTTTTGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCAATAATTAATACATGGTCTTTCACTGGAACTGAAAGGTTTTGT  646

seq1  ATGGTAAAGGAAACCATCATTCAGATAAAGAGCAGCCTGTGAATGTGAGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAAGGAAACCATCATTCAGATAAAGAGCAGCCTGTGAATGTGAGA  696

seq1  GAAGATATTTATGGCTTACACATCTGATAAAAGTCTACTATCAAAAATTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATATTTATGGCTTACACATCTGATAAAAGTCTACTATCAAAAATTT  746

seq1  ATAAGGAACTCAAAAAACTATATCAAGAAAACAACTAAATTTAAAAAATG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAACTCAAAAAACTATATCAAGAAAACAACTAAATTTAAAAAATG  796

seq1  AGCTACAGATCTAAACAGAGAATTC  813
      |||||||||||||||||||||||||
seq2  AGCTACAGATCTAAACAGAGAATTC  821