BAC Information

Click to search

BAC

Clone NameB6Ng01-217M20
Chromosome10 (Build37)
Map Location 92,949,765 - 93,076,746
singlet/doubletdoublet
Overlap geneHal, Amdhd1, Ccdc38, Snrpf
Upstream geneLOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h
Downstream geneLOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217M20.bB6Ng01-217M20.g
ACCGA034105GA034106
length8631,043
definitionB6Ng01-217M20.b B6Ng01-217M20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,075,851 - 93,076,746)(92,949,765 - 92,950,798)
sequence
gaattcagtagaatgataaagtttggttatcaaatttcataatcctgtgt
gtaacgcaaacgtgtttcttctacttgtgtgtaaaagttgttgacacctc
agtctctcagattattgtaaaatacgtgcagaccaatgggccatttttga
gacagaatttttctgcacaaattttaaaaatgtctgtcattaagaattcc
tcttggtatttaaaaaccacaaagcaaaaaacagacaaacaacaacaaca
gctcacagcgcctcttggcaagtgaaaattgacatgggtgcaataagttt
cttatcccaaagccaaaataatatattcctaaatattgggttgctcattc
attcattcactcactcattcattcagtcactcacttgaaaggcccttctg
acacactgtctcagacactgatgacttccagtggaatggagcagtcgagg
tgcctgctaactcaacactgtcattcttagaggatgggggtggaatcgga
gtggaacttaatcgtgaatattagatattttatgtttttgctaaaaatta
tactattctgaacccagttatttctgtcgtgtttctaaggagaaagtaac
tggcttggtgaatttgtggcatctcagaatttaggaaactggaggaggag
gattggggtgacttcgaggccactctggggtgcgtaggggatttcgagat
agcctgggctataaaaaaaaagactatctttttttaaaaggggtgagtaa
aaagttgcataatctccatatatttataatcactattgaaaagataaaaa
gaaagaaagaagaaagaaaggaggaagaaggaaggaaggaaggaagaagg
aaggaaggaagaa
gaattccaccgaacccagattaagggtgacttacacataaggtgaacaga
gacaacagctctggagttatctgacacgcaaaggagaccagagagtgtga
agagaaaaaaaatgagaagtcagccacatgatatttgaggtttgtgtaga
atcttcacatggctaggaggaactgattgcccggtactgatatcatggaa
tcactcaaaagctgggtctacctgggatgtcagcaagagcacccgatagt
ttgggtgacctttcaacctgaggggtagtgggacatctcagccttggcgc
atctgttcatctccagacatcaacatctgaacaggtattcagacaggact
tggtggtgaatgaatgaataaatgaaggtggttcacatctgagggccaca
gttttcccagagttgtaaaagatgaagcccgtatctgggaatgagctgca
agttgaggagagagggaagacttggagcgttccctctggggggggcatga
gtcaaagggtggtgccatcacccccacggtcataggacttgttacatcag
tctgctggggtaagcaggtgacagtccagagtaaggactcagggtatggg
tttcatcccaaattacacacataatagattctggcttcccaaggaccttg
aagctgtttaagcatagccacataagcaactaggatagcttcctaagcgg
tggggttcaggaggagaagaaagggttaaccggaggtcaggtccgtggtg
cagagatgagctaagtaaggttggaaagccatgtccttggaggtgggaat
actgaactgaagctaaacttctggtcttgatagcaaatcgagatgttggc
caaattgcagggcacagtcggggtgtgggttgtctgatgaatacatttcc
attagacctgatggtaaacactggaatgtggaatctggtgttcttctacc
gagcaactgttcttattgaagttaaggcaggtcagggtttctgatattca
atcaatttcttcacactgacattctactaaggcgcactacaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_93075851_93076746
seq2: B6Ng01-217M20.b_48_910 (reverse)

seq1  TTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  50
                                  | ||||||||||||||| ||||
seq2  ----------------------------TTCTTCCTTCCTTCCTT-CTTC  21

seq1  CTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTTT  100
      ||||||||||||||| ||||| ||||||||||| ||||||||||| ||||
seq2  CTTCCTTCCTTCCTT-CTTCC-TCCTTTCTTTC-TTCTTTCTTTC-TTTT  67

seq1  TATCTTTTCAATAGTGATTATAAATATATGGAGATTATGCAACTTTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTCAATAGTGATTATAAATATATGGAGATTATGCAACTTTTTAC  117

seq1  TCACCCCTTTTAAAAAAAGATAGTCTTTTTTTTTATAGCCCAGGCTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCTTTTAAAAAAAGATAGTCTTTTTTTTTATAGCCCAGGCTATCT  167

seq1  CGAAATCCCCTACGCACCCCAGAGTGGCCTCGAAGTCACCCCAATCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATCCCCTACGCACCCCAGAGTGGCCTCGAAGTCACCCCAATCCTCC  217

seq1  TCCTCCAGTTTCCTAAATTCTGAGATGCCACAAATTCACCAAGCCAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAGTTTCCTAAATTCTGAGATGCCACAAATTCACCAAGCCAGTTA  267

seq1  CTTTCTCCTTAGAAACACGACAGAAATAACTGGGTTCAGAATAGTATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCTTAGAAACACGACAGAAATAACTGGGTTCAGAATAGTATAAT  317

seq1  TTTTAGCAAAAACATAAAATATCTAATATTCACGATTAAGTTCCACTCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCAAAAACATAAAATATCTAATATTCACGATTAAGTTCCACTCCG  367

seq1  ATTCCACCCCCATCCTCTAAGAATGACAGTGTTGAGTTAGCAGGCACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACCCCCATCCTCTAAGAATGACAGTGTTGAGTTAGCAGGCACCTC  417

seq1  GACTGCTCCATTCCACTGGAAGTCATCAGTGTCTGAGACAGTGTGTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTCCATTCCACTGGAAGTCATCAGTGTCTGAGACAGTGTGTCAGA  467

seq1  AGGGCCTTTCAAGTGAGTGACTGAATGAATGAGTGAGTGAATGAATGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTTTCAAGTGAGTGACTGAATGAATGAGTGAGTGAATGAATGAAT  517

seq1  GAGCAACCCAATATTTAGGAATATATTATTTTGGCTTTGGGATAAGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACCCAATATTTAGGAATATATTATTTTGGCTTTGGGATAAGAAAC  567

seq1  TTATTGCACCCATGTCAATTTTCACTTGCCAAGAGGCGCTGTGAGCTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCACCCATGTCAATTTTCACTTGCCAAGAGGCGCTGTGAGCTGTT  617

seq1  GTTGTTGTTTGTCTGTTTTTTGCTTTGTGGTTTTTAAATACCAAGAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTTGTCTGTTTTTTGCTTTGTGGTTTTTAAATACCAAGAGGAA  667

seq1  TTCTTAATGACAGACATTTTTAAAATTTGTGCAGAAAAATTCTGTCTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATGACAGACATTTTTAAAATTTGTGCAGAAAAATTCTGTCTCAA  717

seq1  AAATGGCCCATTGGTCTGCACGTATTTTACAATAATCTGAGAGACTGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCCCATTGGTCTGCACGTATTTTACAATAATCTGAGAGACTGAGG  767

seq1  TGTCAACAACTTTTACACACAAGTAGAAGAAACACGTTTGCGTTACACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACAACTTTTACACACAAGTAGAAGAAACACGTTTGCGTTACACAC  817

seq1  AGGATTATGAAATTTGATAACCAAACTTTATCATTCTACTGAATTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTATGAAATTTGATAACCAAACTTTATCATTCTACTGAATTC  863

seq1: chr10_92949765_92950798
seq2: B6Ng01-217M20.g_66_1108

seq1  GAATTCCACCGAACCCAGATTAAGGGTGACTTACACATAAGGTGAACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCGAACCCAGATTAAGGGTGACTTACACATAAGGTGAACAGA  50

seq1  GACAACAGCTCTGGAGTTATCTGACACGCAAAGGAGACCAGAGAGTGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAGCTCTGGAGTTATCTGACACGCAAAGGAGACCAGAGAGTGTGA  100

seq1  AGAGAAAAAAAATGAGAAGTCAGCCACATGATATTTGAGGTTTGTGTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAAAAATGAGAAGTCAGCCACATGATATTTGAGGTTTGTGTAGA  150

seq1  ATCTTCACATGGCTAGGAGGAACTGATTGCCCGGTACTGATATCATGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCACATGGCTAGGAGGAACTGATTGCCCGGTACTGATATCATGGAA  200

seq1  TCACTCAAAAGCTGGGTCTACCTGGGATGTCAGCAAGAGCACCCGATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAAAAGCTGGGTCTACCTGGGATGTCAGCAAGAGCACCCGATAGT  250

seq1  TTGGGTGACCTTTCAACCTGAGGGGTAGTGGGACATCTCAGCCTTGGCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGACCTTTCAACCTGAGGGGTAGTGGGACATCTCAGCCTTGGCGC  300

seq1  ATCTGTTCATCTCCAGACATCAACATCTGAACAGGTATTCAGACAGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTCATCTCCAGACATCAACATCTGAACAGGTATTCAGACAGGACT  350

seq1  TGGTGGTGAATGAATGAATAAATGAAGGTGGTTCACATCTGAGGGCCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGAATGAATGAATAAATGAAGGTGGTTCACATCTGAGGGCCACA  400

seq1  GTTTTCCCAGAGTTGTAAAAGATGAAGCCCGTATCTGGGAATGAGCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCCAGAGTTGTAAAAGATGAAGCCCGTATCTGGGAATGAGCTGCA  450

seq1  AGTTGAGGAGAGAGGGAAGACTTGGAGCGTTCCCTCTGGGGGGGGCATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGGAGAGAGGGAAGACTTGGAGCGTTCCCTCTGGGGGGGGCATGA  500

seq1  GTCAAAGGGTGGTGCCATCACCCCCACGGTCATAGGACTTGTTACATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGGGTGGTGCCATCACCCCCACGGTCATAGGACTTGTTACATCAG  550

seq1  TCTGCTGGGGTAAGCAGGTGACAGTCCAGAGTAAGGACTCAGGGTATGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGGGTAAGCAGGTGACAGTCCAGAGTAAGGACTCAGGGTATGGG  600

seq1  TTTCATCCCAAATTACACACATAATAGATTCTGGCTTCCCAAGGACCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCCCAAATTACACACATAATAGATTCTGGCTTCCCAAGGACCTTG  650

seq1  AAGCTGTTTAAGCATAGCCACATAAGCAACTAGGATAGCTTCCTAAGCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTTTAAGCATAGCCACATAAGCAACTAGGATAGCTTCCTAAGCGG  700

seq1  TGGGGTTCAGGAGGAGAAGAAAGGGTTAACCGGAGGTCAGGTCCGTGG-G  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGGGGTTCAGGAGGAGAAGAAAGGGTTAACCGGAGGTCAGGTCCGTGGTG  750

seq1  CAGAGATGAGCTAAGTAAGG-TGGAAGGCCATGTCC-TGGAGGT-GGAAT  796
      |||||||||||||||||||| ||||| ||||||||| ||||||| |||||
seq2  CAGAGATGAGCTAAGTAAGGTTGGAAAGCCATGTCCTTGGAGGTGGGAAT  800

seq1  ACTGAACTGAAGCT-AACTTCT-GTCTTGATAGCAAATCGAGATGTT-GC  843
      |||||||||||||| ||||||| |||||||||||||||||||||||| ||
seq2  ACTGAACTGAAGCTAAACTTCTGGTCTTGATAGCAAATCGAGATGTTGGC  850

seq1  CAAATTGCAGGGCACAGTCGGGGTGT-GGTTGTCTGATGAATACATTTCG  892
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  CAAATTGCAGGGCACAGTCGGGGTGTGGGTTGTCTGATGAATACATTTCC  900

seq1  A-TAGA-CTGATGGTAAGACACTGG-ATGTGG-ATCTGGGTGTCTATCTA  938
      | |||| |||||||||| ||||||| |||||| |||| |||||   ||||
seq2  ATTAGACCTGATGGTAA-ACACTGGAATGTGGAATCT-GGTGTTCTTCTA  948

seq1  CAGAGCAACTGTTC-TAATGAAGTAGAAGGCAGGTCAGGGTTTCTGATTA  987
      | |||||||||||| || ||||||  ||||||||||||||||||||| ||
seq2  CCGAGCAACTGTTCTTATTGAAGT-TAAGGCAGGTCAGGGTTTCTGA-TA  996

seq1  TTCAATCAAATTTCTCAGAACTGACATACTACTAAAGCGCAC-ACAAT  1034
      ||||||| |||||||    |||||||| ||||||| |||||| |||||
seq2  TTCAATC-AATTTCTTCACACTGACATTCTACTAAGGCGCACTACAAT  1043