BAC Information

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BAC

Clone NameB6Ng01-218E15
Chromosome10 (Build37)
Map Location 27,327,665 - 27,455,895
singlet/doubletdoublet
Overlap geneLama2
Upstream geneLOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk, E430004N04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218E15.bB6Ng01-218E15.g
ACCGA034457GA034458
length1,1701,177
definitionB6Ng01-218E15.b B6Ng01-218E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,454,740 - 27,455,895)(27,327,665 - 27,328,829)
sequence
gaattcatttaagggaagagagagataaggagaaaccagctcttgcccca
ttttggcattctgtgtgttctgtcagatcaacgacatttagcctaaaata
tttccaacatctcttgccttcagtaagaacagagctgtccataggactag
agatattttcagcttaaggcaagggaaatcgttttcttattgaaattcct
tactcaaaatctgcctgaccacttcctgcttcctgttctcatcaattata
tggaaaattcctaaacatggagggggtgaagtgtaataacttggtgcatg
gttgctaagggtcagggaggtgaaggaactaagggagtcagatgccagtg
acaggaacatttgcttaagtaatttagtcagtggattctcattcaaatca
aactctacaaggaaaagactgggtcagttaagagaagtgttcaggggcag
caatccaaagctttggctcaaggaagtaatctttgttaatacatgcatca
acatttcactttaagttaaaagcaatgaatttgcactcatttgcccaagc
ttagatggtgatccaggaccattactttgatgtctgataagaaaagcact
gctttcttccttatataaacacagcaacaatgaactttatgatttcattt
taatttctttaaatttagtataggagtctgtgaacatgaaaaacagagat
caagtctaacttccttctagattttactttcaaaacccttgtttgtttcc
ttgcttgtcacacacgagtgagtgtatgttaggcagtcacgtttatggaa
gtcttcaaagcatttaacttagtttacacagcaaatccatcatcaatcac
ttttcatcaatttgcataccatttaatttaattacataattgtagtaaga
agtacaactagcataaacagtttaggaaattcagtataatttcggtaggc
acacatctctgctgctagcacatatctgtgcacaaaagcaccagaccaat
ctattgagttcttacatttatcatttaaaaatgtctgagaccatggggga
ccctgagtacatgcttcatcctcataagaaccagcctttttcaaaacttt
attttaaagtcttttaataaggattcctagatgggaaaaaagaaaagaaa
tatattccatgggaagaaat

gaattcatgcatttctttcctcaagtacagaaattcttccacaaattgtc
tttggtaaatttggtcagccagtgttgagaaaaagcactttgttgagcca
gagaatttcttggcaccatatcagcctttagactaattaatattacagag
aaactactagaagctgatatatgcttagtgtttcacacaacctcctgaca
ggtctcctcatcatgataaaacgtattaatttgtgttttccttcataagt
tatgtcttaacttaatcactgcaaaaggaataccaagcaacgagtctggg
agttgtgacacttataaggacttggggtaaagacacaaaaatgtatactc
tataaagacataatgttttttaaaataaattagaaaactataatgcgtta
agagacaataaatcaatcgataatatattaaatatgctaaatgtactaat
gaaagtcttttatcacagaaaagtccagatagtgacacttatgatatgca
tatgcccatgtagatcaagacatgtatgcatgctcattgctctcaagata
tgttcacatgcccatgcagcagaaatataagcaactgacatattgttttc
actaggttattttgaaagggcagtctgaatattgctatgaagttagcaat
ttttccttctctttagtggaaagctttagcctaaccatctctgattctta
agtggatatgtttttactcttgttctttcattcactagcatttacaaatc
aagtggtatttaagttcatttcatagtgaatactattgcttgaaacctgc
ggaagtaattccagaaaagccaataaggagccaattactactttcttata
gtagcacaatccaagcccgagagatttagggatttcaaatttaatagatc
attacattgttacatagctttatttagtgtatatttgtatttttcatatg
ttgtttacacaaagataaccaataaagagtatagtctaatgacctctgtt
tttctaattagaataatataattcaataccaggaagaaatgattttaatg
tatctataaaaacaccaaaaatccttaaaacttatgagggaatggaggga
ctagaattcattaaatcagaagaaccaaacctgaaccttctaaaattgca
ctaggatgctcttgttcccttgacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_27454740_27455895
seq2: B6Ng01-218E15.b_47_1216 (reverse)

seq1  ATTTCTT-CCATG--ATATATT--CTTTCTTTTTT-CCATCTA-GTATC-  42
      ||||||| |||||  |||||||   |||||||||| ||||||| | ||| 
seq2  ATTTCTTCCCATGGAATATATTTCTTTTCTTTTTTCCCATCTAGGAATCC  50

seq1  -TAT--AAAGACTTTAAAATAAAGTTTTGAAAAA-GCTGGT--CTATGAG  86
       |||  |||||||||||||||||||||||||||| ||||||   ||||||
seq2  TTATTAAAAGACTTTAAAATAAAGTTTTGAAAAAGGCTGGTTCTTATGAG  100

seq1  AATGAAGCATGTACTCAGGGT-CCCCATGGTCTCAGACATTTTTAAATGA  135
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GATGAAGCATGTACTCAGGGTCCCCCATGGTCTCAGACATTTTTAAATGA  150

seq1  TAAATGTAAGAACTCAATAGATTGGTCTGGTGCTTTTGTGCACAGATATG  185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAAGAACTCAATAGATTGGTCTGGTGCTTTTGTGCACAGATATG  200

seq1  TTGCTAGCAGCAGAGATGTGTGCCTACCGAAATTATACTGAATTTCCTAA  235
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGCTAGCAGCAGAGATGTGTGCCTACCGAAATTATACTGAATTTCCTAA  249

seq1  ACTGTTTATGCTAGTTGTACTTCTTACTACAATTATGTAATTAAATTAAA  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTATGCTAGTTGTACTTCTTACTACAATTATGTAATTAAATTAAA  299

seq1  TGGTATGCAAATTGATGAAAAGTGATTGATGATGGATTTGCTGTGTAAAC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGCAAATTGATGAAAAGTGATTGATGATGGATTTGCTGTGTAAAC  349

seq1  TAAGTTAAATGCTTTGAAGACTTCCATAAACGTGACTGCCTAACATACAC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTAAATGCTTTGAAGACTTCCATAAACGTGACTGCCTAACATACAC  399

seq1  TCACTCGTGTGTGACAAGCAAGGAAACAAACAAGGGTTTTGAAAGTAAAA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCGTGTGTGACAAGCAAGGAAACAAACAAGGGTTTTGAAAGTAAAA  449

seq1  TCTAGAAGGAAGTTAGACTTGATCTCTGTTTTTCATGTTCACAGACTCCT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGGAAGTTAGACTTGATCTCTGTTTTTCATGTTCACAGACTCCT  499

seq1  ATACTAAATTTAAAGAAATTAAAATGAAATCATAAAGTTCATTGTTGCTG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAATTTAAAGAAATTAAAATGAAATCATAAAGTTCATTGTTGCTG  549

seq1  TGTTTATATAAGGAAGAAAGCAGTGCTTTTCTTATCAGACATCAAAGTAA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATATAAGGAAGAAAGCAGTGCTTTTCTTATCAGACATCAAAGTAA  599

seq1  TGGTCCTGGATCACCATCTAAGCTTGGGCAAATGAGTGCAAATTCATTGC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTGGATCACCATCTAAGCTTGGGCAAATGAGTGCAAATTCATTGC  649

seq1  TTTTAACTTAAAGTGAAATGTTGATGCATGTATTAACAAAGATTACTTCC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTTAAAGTGAAATGTTGATGCATGTATTAACAAAGATTACTTCC  699

seq1  TTGAGCCAAAGCTTTGGATTGCTGCCCCTGAACACTTCTCTTAACTGACC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCAAAGCTTTGGATTGCTGCCCCTGAACACTTCTCTTAACTGACC  749

seq1  CAGTCTTTTCCTTGTAGAGTTTGATTTGAATGAGAATCCACTGACTAAAT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTTCCTTGTAGAGTTTGATTTGAATGAGAATCCACTGACTAAAT  799

seq1  TACTTAAGCAAATGTTCCTGTCACTGGCATCTGACTCCCTTAGTTCCTTC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAGCAAATGTTCCTGTCACTGGCATCTGACTCCCTTAGTTCCTTC  849

seq1  ACCTCCCTGACCCTTAGCAACCATGCACCAAGTTATTACACTTCACCCCC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCTGACCCTTAGCAACCATGCACCAAGTTATTACACTTCACCCCC  899

seq1  TCCATGTTTAGGAATTTTCCATATAATTGATGAGAACAGGAAGCAGGAAG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTTTAGGAATTTTCCATATAATTGATGAGAACAGGAAGCAGGAAG  949

seq1  TGGTCAGGCAGATTTTGAGTAAGGAATTTCAATAAGAAAACGATTTCCCT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGGCAGATTTTGAGTAAGGAATTTCAATAAGAAAACGATTTCCCT  999

seq1  TGCCTTAAGCTGAAAATATCTCTAGTCCTATGGACAGCTCTGTTCTTACT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAAGCTGAAAATATCTCTAGTCCTATGGACAGCTCTGTTCTTACT  1049

seq1  GAAGGCAAGAGATGTTGGAAATATTTTAGGCTAAATGTCGTTGATCTGAC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAAGAGATGTTGGAAATATTTTAGGCTAAATGTCGTTGATCTGAC  1099

seq1  AGAACACACAGAATGCCAAAATGGGGCAAGAGCTGGTTTCTCCTTATCTC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACACAGAATGCCAAAATGGGGCAAGAGCTGGTTTCTCCTTATCTC  1149

seq1  TCTCTTCCCTTAAATGAATTC  1156
      |||||||||||||||||||||
seq2  TCTCTTCCCTTAAATGAATTC  1170


seq1: chr10_27327665_27328829
seq2: B6Ng01-218E15.g_65_1241

seq1  GAATTCATGCATTTCTTTCCTCAAGTACAGAAATTCTTCCACAAATTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCATTTCTTTCCTCAAGTACAGAAATTCTTCCACAAATTGTC  50

seq1  TTTGGTAAATTTGGTCAGCCAGTGTTGAGAAAAAGCACTTTGTTGAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAAATTTGGTCAGCCAGTGTTGAGAAAAAGCACTTTGTTGAGCCA  100

seq1  GAGAATTTCTTGGCACCATATCAGCCTTTAGACTAATTAATATTACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTCTTGGCACCATATCAGCCTTTAGACTAATTAATATTACAGAG  150

seq1  AAACTACTAGAAGCTGATATATGCTTAGTGTTTCACACAACCTCCTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACTAGAAGCTGATATATGCTTAGTGTTTCACACAACCTCCTGACA  200

seq1  GGTCTCCTCATCATGATAAAACGTATTAATTTGTGTTTTCCTTCATAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCTCATCATGATAAAACGTATTAATTTGTGTTTTCCTTCATAAGT  250

seq1  TATGTCTTAACTTAATCACTGCAAAAGGAATACCAAGCAACGAGTCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTTAACTTAATCACTGCAAAAGGAATACCAAGCAACGAGTCTGGG  300

seq1  AGTTGTGACACTTATAAGGACTTGGGGTAAAGACACAAAAATGTATACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGACACTTATAAGGACTTGGGGTAAAGACACAAAAATGTATACTC  350

seq1  TATAAAGACATAATGTTTTTTAAAATAAATTAGAAAACTATAATGCGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGACATAATGTTTTTTAAAATAAATTAGAAAACTATAATGCGTTA  400

seq1  AGAGACAATAAATCAATCGATAATATATTAAATATGCTAAATGTACTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAATAAATCAATCGATAATATATTAAATATGCTAAATGTACTAAT  450

seq1  GAAAGTCTTTTATCACAGAAAAGTCCAGATAGTGACACTTATGATATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCTTTTATCACAGAAAAGTCCAGATAGTGACACTTATGATATGCA  500

seq1  TATGCCCATGTAGATCAAGACATGTATGCATGCTCATTGCTCTCAAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCATGTAGATCAAGACATGTATGCATGCTCATTGCTCTCAAGATA  550

seq1  TGTTCACATGCCCATGCAGCAGAAATATAAGCAACTGACATATTGTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACATGCCCATGCAGCAGAAATATAAGCAACTGACATATTGTTTTC  600

seq1  ACTAGGTTATTTTGAAAGGGCAGTCTGAATATTGCTATGAAGTTAGCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTTATTTTGAAAGGGCAGTCTGAATATTGCTATGAAGTTAGCAAT  650

seq1  TTTTCCTTCTCTTTAGTGGAAAGCTTTAGCCTAACCATCTCTGATTCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTCTCTTTAGTGGAAAGCTTTAGCCTAACCATCTCTGATTCTTA  700

seq1  AGTGGATATGTTTTTACTCTTGTTCTTTCATTCACTAGCATTTACAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATATGTTTTTACTCTTGTTCTTTCATTCACTAGCATTTACAAATC  750

seq1  AAGTGGTATTTAAGTTCATTTCATAGTGAATACTATTGCTTGAAACCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTATTTAAGTTCATTTCATAGTGAATACTATTGCTTGAAACCTGC  800

seq1  GGAAGTAATTCCAGAAAAGCCAATAAGGAGCCAATTACTACTTTCTTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAATTCCAGAAAAGCCAATAAGGAGCCAATTACTACTTTCTTATA  850

seq1  GTAGCACAATCCAAGCCCGAGAGATTTAGGGA-TTCAAATTTAATAGATC  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTAGCACAATCCAAGCCCGAGAGATTTAGGGATTTCAAATTTAATAGATC  900

seq1  ATTACATTGTTACATAGCTTTATTTAGTGTATATTTGTA-TTTTCATATG  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTACATTGTTACATAGCTTTATTTAGTGTATATTTGTATTTTTCATATG  950

seq1  TTGTTTACACAAAGATAACCAATAAAGAGTATAGTCTAATGA-CTCTG-T  996
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  TTGTTTACACAAAGATAACCAATAAAGAGTATAGTCTAATGACCTCTGTT  1000

seq1  TTTCTAATTAGAATAATATAATTC-ATA-CAGGAAGAAATGATTTTAATG  1044
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  TTTCTAATTAGAATAATATAATTCAATACCAGGAAGAAATGATTTTAATG  1050

seq1  TATCTTATAAAACA-CAAAAATC--TAAAACTTATTAAGGGAT-GAGGAC  1090
      |||||   |||||| ||||||||  |||||||||| | || || ||||  
seq2  TATCTATAAAAACACCAAAAATCCTTAAAACTTATGAGGGAATGGAGGGA  1100

seq1  TTAGAATTCATAAAATCAGAAGAA-CAAAACTGAA-CTTCTAAAATTGCA  1138
       |||||||||| |||||||||||| |||| ||||| ||||||||||||||
seq2  CTAGAATTCATTAAATCAGAAGAACCAAACCTGAACCTTCTAAAATTGCA  1150

seq1  CTAGGATTGCTCTT-TGTCCTTGACAGA  1165
      |||||| ||||||| |  ||||||||||
seq2  CTAGGA-TGCTCTTGTTCCCTTGACAGA  1177


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