BAC Information

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BAC

Clone NameB6Ng01-223C20
Chromosome10 (Build37)13 (Build37)
Map Location 47,215,809 - 47,215,97135,274,752 - 35,275,585
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041632, LOC668252, LOC100042387
Downstream geneLOC100041663, LOC100042398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223C20.bB6Ng01-223C20.g
ACCGA037993GA037994
length5731,145
definitionB6Ng01-223C20.b B6Ng01-223C20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(47,215,809 - 47,215,971)(35,274,752 - 35,275,585)
sequence
gaattccagacgcagccaaagttgttccttgtgctggcagcctaagttgg
ttgtgtaagagttatccaggtgatgctggttttgaaggtgtgaagaggtc
atggagagtggctgacaggtgtcattgtgtggcagtgttagagtccctgc
aaagatcccaggaaggctccaatggaagtgcatctcagttgtagcagaag
actccagtattttggagatgccagtacaatgggatgactaccaagaatag
tatcagctgaagaatggagcctgcctacatttagaagagaagctgtgcat
gatacatgaggtggagttggtgaagtgacccaagccccttaaaggagcca
gaagattgtgaatgaattccagatattggatactgaattatttattccca
ttgctggaattttgttttgctttgttctaattattattatgtccagatcc
ttctaccttgaagtaagaagtaatcttgattttataggagcccacagttg
agagacttttgatttaaaaagagtctttggattttttaaaaaagaaactg
aatttttaaagtgtttgaattta

gaattcagtggagtatttatatatttacttatttatatttttatgtatat
gagtgtttttcttgtgtgtatgtttgtgtgccatgtatgtgtttgaaatc
caaaagaagccagaaaagagctttggatcctcttgaactggagttatagg
ttgttgtgagctgctatgtaggggctgggaaacaaatcttggtcctctgc
cagagtagcaaagctcttaactgctgagccatctctctagcccctaagtg
gattatgtgcaaagagaagacattaattgagaagttgtgaggggtctgag
aggagatggagtataaaagtgtacaggtgaatatggttgaaatactgtat
agagtatacctaaaaatgttaaattaaaaccatttggccatacttctgtg
ggtttatattcacataattctgttctattgatttatccttttgctaatat
catatggtcttgatagtaatgtgattagcccaattttcttcctcttcaac
ttgttttagttgtcctaattacttcaattttctcctgacgtttgaatcag
cttatttggaaaatatacagctgaaaccttttggagattggtattaactc
tctagattgtctggggaaaattgaagtctaagctgtgaggtcttctgacc
actaagtacggtgtgtttctctttttattgagaattctgcttcttttgtc
tgtattttatagctttcatcatacggatcctagacatgaaattgctagat
ttatcttttaacattacatttttgtggtgagctgttgtaatttgtttaaa
tgctatttaattcttgctgtaacatagggacgaataaatttgcctctctt
ttcctctgagtctaatttattattttgagtttttacaatttaattattat
ttcaagtacaatttgcacatgtatactgtgagggaaggtgtgggtgaaac
cactgaacttacacctaccctgtgggttagacaggagaacgtttactggg
gggagaagcttctggggatgccaaggataatattcatgtagaaatttatt
tttgtgaccacaccttagcaaaatgtagtggggaggtgaatttgccttaa
tgaggcaattcgctcaaaggcaatttttgaggattaactttttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_47215809_47215971
seq2: B6Ng01-223C20.b_575_615

seq1  TTTTTAAAAAAGTAAAAAGCACAATAAACACACAAAATCATGAAAATACA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAAATAAGAAGCCATTATATATATGGGTGTGTGTGTGTGTGTGTGAAAAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAAGTAAGATTTAAAAAATATTCAAACAGAGCTGAATTTTTATAGAGATA  150
               ||||||||| |         | ||||||||||| ||     
seq2  -------TTTTTAAAAAAGA---------AACTGAATTTTTAAAG-----  29

seq1  TTGTTTGAATTTA  163
       ||||||||||||
seq2  -TGTTTGAATTTA  41


seq1: chr13_35274752_35275585
seq2: B6Ng01-223C20.g_358_1211

seq1  GGGTCTGAGAGGAGATGGAGTATAAAAGTGTACAGGTGAATATGGTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGAGAGGAGATGGAGTATAAAAGTGTACAGGTGAATATGGTTGAA  50

seq1  ATACTGTATAGAGTATACCTAAAAATGTTAAATTAAAACCATTTGGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTATAGAGTATACCTAAAAATGTTAAATTAAAACCATTTGGCCAT  100

seq1  ACTTCTGTGGGTTTATATTCACATAATTCTGTTCTATTGATTTATCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTGGGTTTATATTCACATAATTCTGTTCTATTGATTTATCCTTT  150

seq1  TGCTAATATCATATGGTCTTGATAGTAATGTGATTAGCCCAATTTTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATATCATATGGTCTTGATAGTAATGTGATTAGCCCAATTTTCTTC  200

seq1  CTCTTCAACTTGTTTTAGTTGTCCTAATTACTTCAATTTTCTCCTGACGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAACTTGTTTTAGTTGTCCTAATTACTTCAATTTTCTCCTGACGT  250

seq1  TTGAATCAGCTTATTTGGAAAATATACAGCTGAAACCTTTTGGAGATTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCAGCTTATTTGGAAAATATACAGCTGAAACCTTTTGGAGATTGG  300

seq1  TATTAACTCTCTAGATTGTCTGGGGAAAATTGAAGTCTAAGCTGTGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACTCTCTAGATTGTCTGGGGAAAATTGAAGTCTAAGCTGTGAGGT  350

seq1  CTTCTGACCACTAAGTACGGTGTGTTTCTCTTTTTATTGAGAATTCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGACCACTAAGTACGGTGTGTTTCTCTTTTTATTGAGAATTCTGCT  400

seq1  TCTTTTGTCTGTATTTTATAGCTTTCATCATACGGATCCTAGACATG-AA  449
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTTTTGTCTGTATTTTATAGCTTTCATCATACGGATCCTAGACATGAAA  450

seq1  TTGCTAGATTTATCTTTTAACATTACATTTTTGTGGTGAGCTGTTGTAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGATTTATCTTTTAACATTACATTTTTGTGGTGAGCTGTTGTAAT  500

seq1  TTGTTTAAATGCTATTTAATTCTTGCTGTAACATAGGGACGAATAAATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAATGCTATTTAATTCTTGCTGTAACATAGGGACGAATAAATTT  550

seq1  GCCTCTC-TTTCCTCTGAGTCTAATTTATTATTTTGAGTTTTTACAATTT  598
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTTTTCCTCTGAGTCTAATTTATTATTTTGAGTTTTTACAATTT  600

seq1  AATTATTATTTCAAGTACAATTTTGCACATGTATACTGTGAGGGAAGGTG  648
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATTATTATTTCAAGTACAA-TTTGCACATGTATACTGTGAGGGAAGGTG  649

seq1  T-GGTGAAACCACTG-ACCTACA-CTACCCTGTGGG-TAGACA-GAG-AC  692
      | ||||||||||||| || |||| |||||||||||| |||||| ||| ||
seq2  TGGGTGAAACCACTGAACTTACACCTACCCTGTGGGTTAGACAGGAGAAC  699

seq1  GTTTACT-GGGGGAGAAGCTTCT-GGGATGCC-AGGATACATATTCATGT  739
      ||||||| ||||||||||||||| |||||||| |||||| ||||||||||
seq2  GTTTACTGGGGGGAGAAGCTTCTGGGGATGCCAAGGATA-ATATTCATGT  748

seq1  AG--ATTTA-TTTTGTGA-CACACCTTAGC-AAATGTAGTTGG--AGTG-  781
      ||  ||||| |||||||| ||||||||||| ||||||||| ||   ||| 
seq2  AGAAATTTATTTTTGTGACCACACCTTAGCAAAATGTAGTGGGGAGGTGA  798

seq1  ATTTGCCTTTATGAAGCA--TC-CTCAAAGCATTTTTTTAAAGATTTACT  828
      ||||||||| |||| |||  || |||||||    ||||| | |||| |||
seq2  ATTTGCCTTAATGAGGCAATTCGCTCAAAGGCAATTTTTGAGGATTAACT  848

seq1  TTTTAC  834
      ||||||
seq2  TTTTAC  854


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