BAC Information

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BAC

Clone NameB6Ng01-226D23
Chromosome10 (Build37)
Map Location 4,768,163 - 4,960,659
singlet/doubletdoublet
Overlap geneSyne1
Upstream geneLOC237252, LOC100041224, Rgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1
Downstream geneEsr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226D23.bB6Ng01-226D23.g
ACCGA040236GA040237
length1,098657
definitionB6Ng01-226D23.b B6Ng01-226D23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,959,555 - 4,960,659)(4,768,163 - 4,768,817)
sequence
gaattctgtattttgtgttgacagtggtatactgtttacctttaatctat
ttttactatatttcttttgctattttccttcctcacacttggttaaggga
gggccagagatggaacccagaaccccacatttgtggtgaactacactttc
aagcctgatttcaattgcattttcatatttagtttagtttggtgatgttg
ctgtcatggtatttatttatttttcctctgggtggtaatagatactgggt
ccccaaggagaagcatctcactgataataccctcatatagagatattctc
cacaataaatgtgtataaattgcaacatagaaacacaagaaatatgaaag
agcaaagcaacatgattacttcaaaagttaataactctaaaaaaatggaa
tccaaagatgttaaaatggcagcaatgtcaggaaaagagcacaaaagtct
agtgaacaaagaccacaaaagcaatccaaacttaaaaaatcatggttaag
aaattcaacaaaagggcgcctagtctttaaaaataaaagggaatattaga
cataccaagttcaattaatcaattaagaagagcatcaccagtaacaacaa
aaccagataaaagagagaatattagtcatgaggacacagttgaggaattg
tcaactcagataacaatgaaaacaaaaacaaaaacaaaaaaaattaaaaa
aagaaaacaaaacaaaaacagaaaaaaacaatcacatattgtcctctgaa
atgctccacccagcagctgactcagaaggatacagacccccatagccaaa
cagtggatggggcttggggactcttatgaaagaataggaggaataggagg
agaggatcctgaaggggataggaactccataggaagacaaacagagtcaa
ctaacctggacccttggggctctcagagtctgaaccaccagcccaagaac
acatatgggactggacctagggcttccccacttttatgtatctgcttgac
ctttcatgtggtctgaacactgagcagggctatccaaaagctgttgctat
ttgtggatatatctatagtgagctggcttgttctggcctcagtgggaa
gaattcagtgtttattagggttgggaattcagtgtttatttgttcctgag
caactcccagcattttgttcttaaatgacctgaatttcagaagtttttat
ttttaatcctgattttgtggcttagtttgttgtttgtggttatgtcttgc
ttttgtattcatttatgtttttgtttgcctttagatgtgtctcttacttg
ccagagagtttcaaaatgcatttagaagtattaatttgaccttgaatcct
ataggaaatagtaaataggggcagagacatggagagaatgaatgggtgtg
ggggagaaggcacaggttcattcagatagattttgttctatccccagaat
ggaaacctggtacaaaggggtccctgcttgactgaagtgggatttctaaa
actgtggcagtagagctgtagaaaacttccagatttaaggaacatttagg
agcggcactgagtaggtgctgctgaggttggatagggttgaaagaataaa
tagcacgctgcctgtataaagagtacccagaggaatgcctgcgcaggtga
aggtggaggtcacctgagactggaacaggccatcttcaaagtgtctgggg
agagggagatgttcaaaagaaagatttttagttcagagacgaatggaatg
tctagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_4959555_4960659
seq2: B6Ng01-226D23.b_47_1144 (reverse)

seq1  TTCCCACTGAGGCCAG-ACAAGGCAGCTCAACTATTAGAATATATCCCAC  49
      |||||||||||||||| ||||| |||||| |||| ||| |||||| ||||
seq2  TTCCCACTGAGGCCAGAACAAGCCAGCTC-ACTA-TAG-ATATAT-CCAC  46

seq1  AAATAGGCAACAGCTTTTGGGATAGCCCCTGCTCCAGTTGTTCAGGACCC  99
      ||||| |||||||||||| |||||| ||||||| ||| |||||||   ||
seq2  AAATA-GCAACAGCTTTT-GGATAG-CCCTGCT-CAG-TGTTCAG--ACC  89

seq1  ACATG-AAGGTCAAGCAGATACATAAAAGTGGGG-AGGCCTAGGTCCAGT  147
      ||||| |||||||||||||||||||||||||||| || ||||||||||||
seq2  ACATGAAAGGTCAAGCAGATACATAAAAGTGGGGAAGCCCTAGGTCCAGT  139

seq1  -CCATATGTGTTCTTTGGCTGGTGGTTCAGACTCTGAGAGCCCCAAGGGT  196
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCATATGTGTTCTTGGGCTGGTGGTTCAGACTCTGAGAGCCCCAAGGGT  189

seq1  CCAGGTTAGTTGACTCTGTTTGTCTTCCTATGGAGTTCCTATCCCCTTCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTAGTTGACTCTGTTTGTCTTCCTATGGAGTTCCTATCCCCTTCA  239

seq1  GGATCCTCTCCTCCTATTCCTCCTATTCTTTCATAAGAGTCCCCAAGCCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTCTCCTCCTATTCCTCCTATTCTTTCATAAGAGTCCCCAAGCCC  289

seq1  CATCCACTGTTTGGCTATGGGGGTCTGTATCCTTCTGAGTCAGCTGCTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACTGTTTGGCTATGGGGGTCTGTATCCTTCTGAGTCAGCTGCTGG  339

seq1  GTGGAGCATTTCAGAGGACAATATGTGATTGTTTTTTTCTGTTTTTGTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCATTTCAGAGGACAATATGTGATTGTTTTTTTCTGTTTTTGTTT  389

seq1  TGTTTTCTTTTTTTAATTTTTTTTGTTTTTGTTTTTGTTTTCATTGTTAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTTTTTTAATTTTTTTTGTTTTTGTTTTTGTTTTCATTGTTAT  439

seq1  CTGAGTTGACAATTCCTCAACTGTGTCCTCATGACTAATATTCTCTCTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTGACAATTCCTCAACTGTGTCCTCATGACTAATATTCTCTCTTT  489

seq1  TATCTGGTTTTGTTGTTACTGGTGATGCTCTTCTTAATTGATTAATTGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGTTTTGTTGTTACTGGTGATGCTCTTCTTAATTGATTAATTGAA  539

seq1  CTTGGTATGTCTAATATTCCCTTTTATTTTTAAAGACTAGGCGCCCTTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTATGTCTAATATTCCCTTTTATTTTTAAAGACTAGGCGCCCTTTT  589

seq1  GTTGAATTTCTTAACCATGATTTTTTAAGTTTGGATTGCTTTTGTGGTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATTTCTTAACCATGATTTTTTAAGTTTGGATTGCTTTTGTGGTCT  639

seq1  TTGTTCACTAGACTTTTGTGCTCTTTTCCTGACATTGCTGCCATTTTAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCACTAGACTTTTGTGCTCTTTTCCTGACATTGCTGCCATTTTAAC  689

seq1  ATCTTTGGATTCCATTTTTTTAGAGTTATTAACTTTTGAAGTAATCATGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGGATTCCATTTTTTTAGAGTTATTAACTTTTGAAGTAATCATGT  739

seq1  TGCTTTGCTCTTTCATATTTCTTGTGTTTCTATGTTGCAATTTATACACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGCTCTTTCATATTTCTTGTGTTTCTATGTTGCAATTTATACACA  789

seq1  TTTATTGTGGAGAATATCTCTATATGAGGGTATTATCAGTGAGATGCTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTGGAGAATATCTCTATATGAGGGTATTATCAGTGAGATGCTTC  839

seq1  TCCTTGGGGACCCAGTATCTATTACCACCCAGAGGAAAAATAAATAAATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGGGACCCAGTATCTATTACCACCCAGAGGAAAAATAAATAAATA  889

seq1  CCATGACAGCAACATCACCAAACTAAACTAAATATGAAAATGCAATTGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACAGCAACATCACCAAACTAAACTAAATATGAAAATGCAATTGAA  939

seq1  ATCAGGCTTGAAAGTGTAGTTCACCACAAATGTGGGGTTCTGGGTTCCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCTTGAAAGTGTAGTTCACCACAAATGTGGGGTTCTGGGTTCCAT  989

seq1  CTCTGGCCCTCCCTTAACCAAGTGTGAGGAAGGAAAATAGCAAAAGAAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCCTCCCTTAACCAAGTGTGAGGAAGGAAAATAGCAAAAGAAAT  1039

seq1  ATAGTAAAAATAGATTAAAGGTAAACAGTATACCACTGTCAACACAAAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAAAATAGATTAAAGGTAAACAGTATACCACTGTCAACACAAAAT  1089

seq1  ACAGAATTC  1105
      |||||||||
seq2  ACAGAATTC  1098

seq1: chr10_4768163_4768817
seq2: B6Ng01-226D23.g_68_724

seq1  GAATTCAGTGTTTATTAGGGTTGGGAATTCAGTGTTTATTTGTTCCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTTTATTAGGGTTGGGAATTCAGTGTTTATTTGTTCCTGAG  50

seq1  CAACTCCCAGCATTTTGTTCTTAAATGACCTGAATTTCAGAAGTTTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCCAGCATTTTGTTCTTAAATGACCTGAATTTCAGAAGTTTTTAT  100

seq1  TTTTAATCCTGATTTTGTGGCTTAGTTTGTTGTTTGTGGTTATGTCTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCCTGATTTTGTGGCTTAGTTTGTTGTTTGTGGTTATGTCTTGC  150

seq1  TTTTGTATTCATTTATGTTTTTGTTTGCCTTTAGATGTGTCTCTTACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATTCATTTATGTTTTTGTTTGCCTTTAGATGTGTCTCTTACTTG  200

seq1  CCAGAGAGTTTCAAAATGCATTTAGAAGTATTAATTTGACCTTGAATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGTTTCAAAATGCATTTAGAAGTATTAATTTGACCTTGAATCCT  250

seq1  ATAGGAAATAGTAAATAGGGGCAGAGACATGGAGAGAATGAATGGGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAATAGTAAATAGGGGCAGAGACATGGAGAGAATGAATGGGTGTG  300

seq1  GGGGAGAAGGCACAGGTTCATTCAGATAGATTTTGTTCTATCCCCAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAAGGCACAGGTTCATTCAGATAGATTTTGTTCTATCCCCAGAAT  350

seq1  GGAAACCTGGTACAAAGGGGTCCCTGCTTGACTGAAGTGGGATTTCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCTGGTACAAAGGGGTCCCTGCTTGACTGAAGTGGGATTTCTAAA  400

seq1  ACTGTGGCAGTAGAGCTGTAGAAAACTTCCAGATTTAAGGAACATTTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGCAGTAGAGCTGTAGAAAACTTCCAGATTTAAGGAACATTTAGG  450

seq1  AGCGGCACTGAGTAGGTGCTGCTGAGGTTGGATAGGGTTGAAAGAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCACTGAGTAGGTGCTGCTGAGGTTGGATAGGGTTGAAAGAATAAA  500

seq1  TAGCACGCTGCCTGTATAAAGAGTACCCAGAGGAATGCCTGCGCAGGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACGCTGCCTGTATAAAGAGTACCCAGAGGAATGCCTGCGCAGGTGA  550

seq1  AGGTGGAGGTCACCTGAGACTGGAACAGGCCATCTTCAAAGTGTCTGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGGTCACCTGAGACTGGAACAGGCCATCTTCAAAGTGTCTGGGG  600

seq1  AGAGGGAGATGTTC-AAAGAAAGA-TTTTAGTTCAGAGCCGAATGGAATG  648
      |||||||||||||| ||||||||| ||||||||||||| |||||||||||
seq2  AGAGGGAGATGTTCAAAAGAAAGATTTTTAGTTCAGAGACGAATGGAATG  650

seq1  TCTAGAT  655
      |||||||
seq2  TCTAGAT  657