BAC Information

Click to search

BAC

Clone NameB6Ng01-227L24
Chromosome10 (Build37)
Map Location 114,753,129 - 114,754,275
singlet/doubletsinglet
Overlap genenone
Upstream geneTrhde, 4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21
Downstream geneTmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik, Ptprb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227L24.bB6Ng01-227L24.g
ACCGA041339GA041340
length3071,144
definitionB6Ng01-227L24.b B6Ng01-227L24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttgtttagctctttgccccatttttaatggggttatttgaatttctgga
gtccagcttattgagttctttgtatatattggatattagtcccctatcgg
atttaggattggtaaaaatccttccccaatcttttggtggcctttttgtc
ttattgacagtagctgcatatgtagcagaagatggcctaatcagccatca
ttgggaggagaggcccttcgtcttgcaaagattatatgccccaggggaat
gccagggccaggaagttggagtgggtgggttggagagcagggcaggatgg
gggtatg
gaattccgattcggttgtaggtttaagagcaaggattgcagaagacttaa
cttctctccgtttccagccctaaaagcccaggctaagaataaatgcggtc
ccatcatcagtcatcactcctggttccccaggatttctgtctatgctgag
tccactttgatgggtctggtttattggacgattgcttattttttcttcct
gtgtttccattttatttcatgaaatacactttccaagaaagcaacctggt
atttctgaaattttgtagtttggtgtcacttaaaataaactttcatctca
tcagactaattttacacttcaacttaaaggcagctcattcgttcattcaa
cgagggcgtgaatgtagccaatgcttgccattctctgtgtcgcattagat
acaatgtctctgtcctcagagagcttacatttttaaccaaggaaacaacg
catgcgcaatttacacactgcatgctttttaaggagaagcaattcagaat
gttttacaaagatacatgggaagctagctgagttagcgtcctagaagagc
ttcctggagaaagctgccttttgttaggagtatcttcggcaaaaaggaga
gccgtgaagtagaaaggagcatccgacattgacgtgtgacaagaagtcag
acaagaaatcagagacattacctttaagttcaaggccagcctcttttgaa
ttgtgagctctaagctaattggagctacatagcaagacaccatttcagta
ataataataatgataatatttacaataataatgcaaataggaaaagaatt
tgtgatgtaacttgcaaggtatcaattcaaaaacagtctttaacctggta
cagaatgttatcgggtcctttttacaaaattataattagaaaattggaca
aggctaaaattacgtatgtctctctagaatcaatcatttatagattatct
tgtcaattatttttataaatgagattatatatctactccttatgctgcgt
agtcttacatcaatttggacatacaaactagagttatctgaaaggaggca
cgaacctcaatggagaaaatgccaccataagattccggctgtagcaatct
ttctcaattagtgttcaggggtgggcccagccaatgtgggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_114753129_114754275
seq2: B6Ng01-227L24.g_64_1207

seq1  GAATTCCGATTCGGTTGTAGGTTTAAGAGCAAGGATTGCAGAAGACTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGATTCGGTTGTAGGTTTAAGAGCAAGGATTGCAGAAGACTTAA  50

seq1  CTTCTCTCCGTTTCCAGCCCTAAAAGCCCAGGCTAAGAATAAATGCGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCCGTTTCCAGCCCTAAAAGCCCAGGCTAAGAATAAATGCGGTC  100

seq1  CCATCATCAGTCATCACTCCTGGTTCCCCAGGATTTCTGTCTATGCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATCAGTCATCACTCCTGGTTCCCCAGGATTTCTGTCTATGCTGAG  150

seq1  TCCACTTTGATGGGTCTGGTTTATTGGACGATTGCTTATTTTTTCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTGATGGGTCTGGTTTATTGGACGATTGCTTATTTTTTCTTCCT  200

seq1  GTGTTTCCATTTTATTTCATGAAATACACTTTCCAAGAAAGCAACCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCCATTTTATTTCATGAAATACACTTTCCAAGAAAGCAACCTGGT  250

seq1  ATTTCTGAAATTTTGTAGTTTGGTGTCACTTAAAATAAACTTTCATCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAAATTTTGTAGTTTGGTGTCACTTAAAATAAACTTTCATCTCA  300

seq1  TCAGACTAATTTTACACTTCAACTTAAAGGCAGCTCATTCGTTCATTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTAATTTTACACTTCAACTTAAAGGCAGCTCATTCGTTCATTCAA  350

seq1  CGAGGGCGTGAATGTAGCCAATGCTTGCCATTCTCTGTGTCGCATTAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGCGTGAATGTAGCCAATGCTTGCCATTCTCTGTGTCGCATTAGAT  400

seq1  ACAATGTCTCTGTCCTCAGAGAGCTTACATTTTTAACCAAGGAAACAACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCTCTGTCCTCAGAGAGCTTACATTTTTAACCAAGGAAACAACG  450

seq1  CATGCGCAATTTACACACTGCATGCTTTTTAAGGAGAAGCAATTCAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGCAATTTACACACTGCATGCTTTTTAAGGAGAAGCAATTCAGAAT  500

seq1  GTTTTACAAAGATACATGGGAAGCTAGCTGAGTTAGCGTCCTAGAAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACAAAGATACATGGGAAGCTAGCTGAGTTAGCGTCCTAGAAGAGC  550

seq1  TTCCTGGAGAAAGCTGCCTTTTGTTAGGAGTATCTTCGGCAAAAAGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGAGAAAGCTGCCTTTTGTTAGGAGTATCTTCGGCAAAAAGGAGA  600

seq1  GCCGTGAAGTAGAAAGGAGCATCCGACATTGACGTGTGACAAGAAGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGAAGTAGAAAGGAGCATCCGACATTGACGTGTGACAAGAAGTCAG  650

seq1  ACAAGAAATCAGAGACATTACCTTTAAGTTCAAGGCCAGCCTCTTTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAATCAGAGACATTACCTTTAAGTTCAAGGCCAGCCTCTTTTGAA  700

seq1  TTGTGAGCTCTAAGCTAATTGGAGCTACATAGCAAGACACCATTTCAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCTCTAAGCTAATTGGAGCTACATAGCAAGACACCATTTCAGTA  750

seq1  ATAATAATAATGATAATATTTACAATAATAATGCAAATAGGAAAAGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAATGATAATATTTACAATAATAATGCAAATAGGAAAAGAATT  800

seq1  TGTGATGTAACTTGCAAGGTATCAATTCAAAAACAGTCTTTAACCTGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTAACTTGCAAGGTATCAATTCAAAAACAGTCTTTAACCTGGTA  850

seq1  CAGAATGTTATCGGGTCC-TTTTACAAAATTATAATTAGAAAATTGGACA  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGAATGTTATCGGGTCCTTTTTACAAAATTATAATTAGAAAATTGGACA  900

seq1  AGGCTAAAATTACGTATGTCTCTCTAGAATCAATCATTTATAAGATTATC  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGGCTAAAATTACGTATGTCTCTCTAGAATCAATCATTTAT-AGATTATC  949

seq1  TTGTCAATTATTTTTATAAATGAGATTATATTATCTACTCCTTATGCTGC  999
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGTCAATTATTTTTATAAATGAGATTATA-TATCTACTCCTTATGCTGC  998

seq1  GTAGTCTTACATCAATTT-GACATACAAACTAGAGTTATCTGAAAGGAGG  1048
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  GTAGTCTTACATCAATTTGGACATACAAACTAGAGTTATCTGAAAGGA-G  1047

seq1  GAACGAACCTCAAATGAGAAAATGCCACCATAAGA-TCCGGCTGTAAGGC  1097
      | |||||||||||  |||||||||||||||||||| ||||||||| ||  
seq2  GCACGAACCTCAATGGAGAAAATGCCACCATAAGATTCCGGCTGT-AGCA  1096

seq1  ATC-TTCTCAATTAGTGGTCAAGGGGGTGGGCCCAGCCCATTGTGGGTGG  1146
      ||| ||||||||||||| |||  ||||||||||||| ||| |||||||||
seq2  ATCTTTCTCAATTAGTGTTCA--GGGGTGGGCCCAG-CCAATGTGGGTGG  1143

seq1  G  1147
      |
seq2  G  1144