BAC Information

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BAC

Clone NameB6Ng01-228I18
Chromosome15 (Build37)10 (Build37)
Map Location 25,251,912 - 25,253,02759,715,308 - 59,715,965
singlet/doubletsingletsinglet
Overlap gene4930445E18Rik
Upstream geneLOC666999, LOC100040492, LOC100040499, LOC100040529, 9230109A22Rik
Downstream geneBasp1, EG432939, LOC100040583, Myo10, LOC100040602, Ppia-ps15_175.1, 1810015C04Rik, Zfp622, AK162044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228I18.bB6Ng01-228I18.g
ACCGA041932GA041933
length1,121732
definitionB6Ng01-228I18.b B6Ng01-228I18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,251,912 - 25,253,027)(59,715,308 - 59,715,965)
sequence
gaattctctgtccttctgcgtctgcactgagaaaatggaactgcttgtag
aaccaaggtgttttaagattgaggaaattctaccaaccaagacgggaacc
tcctttcttcacttttccccttggggtgttgccaagagacctgcctgaga
ccagctgaaagagcaaagtcatgggcagggtcttattctgccctgagaag
agagctggggagattaagcccaagcacctcgttctgtaacgcccactacc
taaggtacttacaacatcacgtaagaagcccactcagagtcatcaaggca
gcatagctgtgtcagatctcaaaggcaagtttttaatgagatcctttaaa
actttagccctaggatagacttcttttccctgagaaagtaaagccaactt
atatgattctacaggacgaatgatgacctattcaccctaaaacgagaaaa
taaatcatatgtttggtctacacacaacaccattcctaaccctgagtttc
cttaggcaagaagtatgtccataaactgagttggctactatcactttccc
taacataaatattaatatgttaggtaggcatttaattttccctagggact
ccactggaacaaggaaatgaattgccagacagcaataaactggattaaaa
cggcctgttggaccacatactgcacaactttctgtctggagcttcatcat
cttgtttctctcgggcctgggctccagatattatcttctacagcattttc
atacaaaagcttctctagaaacagtgtccctccgttccccaagaactaaa
tccagaagaccattcaactaaaacgattgtaaattaacccgacctttcat
gtaagtggggattctgtttgcaccgtctctagtagcgtttgatgacgata
ctctagcaatgtcactcactcttccaggatgctgctgtagaaagcctttc
ccaaaactccctctgcacaccaggaaatttgtcatagagaatataccctt
gtttacaacccatgtatacaaaccctccaggtaatgaggggccaatctag
agaagaataaagaaaccacaaataagtgtggttctgtacaggattactag
actcaaaggctaattgaatgc
gaattcctgaagggtttttaaatcctgtactgtgcaagaaatcagtaggg
agaaagaaaaggggggagggagggatttcaggccagcctgggctacagaa
tgagggagtctcagtaaataataaataggtctgggcagtggtgatataca
tgcctttaatcccagcattccagaggcagaggtaggtgggtctctgtgag
ctcagggcctgctttggctacctagagaagctgtggccagccacagccac
ccaaaaccctatctcaaaacccaatcagtcaatcagtcaaccaactgatt
ggttaaatcagtctttggtctgctgcttcctggatcctcgcccaacaaaa
agctgagccacctcctgacctctgttcccccacacagggcatttttggag
gttaagctggggagagcagcccaggatgcttagggaagcgacaccaacag
tttctggccaccacctcctcccctgcccccaacattgcacaagactcctt
gagcctgtagccctgagcaatatccatcctctttcgaaattactactgtg
tgcaaagccagtcacctgcactacagctttcctgagaaaagggatcagaa
accttacccatgggacaggcaggggtgatgggttcccctagccggagcag
agcaccctcattgccctaggcctgagtggggccatacttgtgcacatttg
gcacatgcacacacacacacaaacacacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_25251912_25253027
seq2: B6Ng01-228I18.b_41_1161

seq1  GAATTCTCTGCCAATTATATGTTATATACTGAGAAAACAGAACTGCTTTT  50
      |||||||||| |  || |  | | |  ||||||||||  ||||||||| |
seq2  GAATTCTCTGTC-CTTCTGCG-TCTGCACTGAGAAAATGGAACTGCTTGT  48

seq1  AGAACCAAGAGTTACCAAGATTGAGGAAATTCTAGCAACCAAGACAGGAA  100
      |||||||||   |   |||||||||||||||||| |||||||||| ||||
seq2  AGAACCAAGGTGTTTTAAGATTGAGGAAATTCTACCAACCAAGACGGGAA  98

seq1  CCTCCTTTCTTCACTTTTCCCCTTGGGGTGTTGCCAAGAGACCTGCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  CCTCCTTTCTTCACTTTTCCCCTTGGGGTGTTGCCAAGAGACCTGCCTGA  148

seq1  GACAAGCTGAAAGAGCAAAGTCATGGGCAGGGTCTTATTCTGCCCAGAGA  200
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GACCAGCTGAAAGAGCAAAGTCATGGGCAGGGTCTTATTCTGCCCTGAGA  198

seq1  AGAGAGCTGGGAAGTTTAACCAGAAGCACCTCACTCACTAACGCCCACTA  250
      ||||||||||| || |||| |  |||||||||  ||  ||||||||||||
seq2  AGAGAGCTGGGGAGATTAAGCCCAAGCACCTCGTTCTGTAACGCCCACTA  248

seq1  CCTAAGGTACTTACAACATCACGTAAGAAGCCCACAGAGAGTCATCAAGG  300
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  CCTAAGGTACTTACAACATCACGTAAGAAGCCCACTCAGAGTCATCAAGG  298

seq1  CAGCATACGTGTGTCAGATCTCAAAGGCAAGTTTTTAAAAAGATCCTTTA  350
      |||||||  |||||||||||||||||||||||||||||  ||||||||||
seq2  CAGCATAGCTGTGTCAGATCTCAAAGGCAAGTTTTTAATGAGATCCTTTA  348

seq1  AAACTTTAGCCCTAGGATAGACTTCTTTTCCAAGAGAAAGTAAAGCCAAC  400
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  AAACTTTAGCCCTAGGATAGACTTCTTTTCCCTGAGAAAGTAAAGCCAAC  398

seq1  TTATATGATTCTACAGGTCGAATGATGACCTAAGCACCCTAAAACAAGAA  450
      ||||||||||||||||| ||||||||||||||  ||||||||||| ||||
seq2  TTATATGATTCTACAGGACGAATGATGACCTATTCACCCTAAAACGAGAA  448

seq1  AATAAATCATATGTTTGGTTTACACACAACACCATTCCTAACCCTGAGTT  500
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATAAATCATATGTTTGGTCTACACACAACACCATTCCTAACCCTGAGTT  498

seq1  TCCTTAGGCAAGAATTATGTCCATAAACTGATTTGGCAACTATCACTTTG  550
      |||||||||||||| |||||||||||||||| ||||| ||||||||||| 
seq2  TCCTTAGGCAAGAAGTATGTCCATAAACTGAGTTGGCTACTATCACTTTC  548

seq1  CATAGCATAGATATTAGTATGTTAGGTAGGCATTTAACATTCCCTAGGGA  600
      | || |||| |||||| ||||||||||||||||||||  |||||||||||
seq2  CCTAACATAAATATTAATATGTTAGGTAGGCATTTAATTTTCCCTAGGGA  598

seq1  CTCCACTGGAAGAAGGAAATGAAAAGCCAGACAGCAATAAACTGGAGTAG  650
      ||||||||||| |||||||||||  ||||||||||||||||||||| || 
seq2  CTCCACTGGAACAAGGAAATGAATTGCCAGACAGCAATAAACTGGATTAA  648

seq1  AAGGGCCTGTTGGACCACATACCAGACAACTCAGTAGTCTGGAGTTTCAT  700
      || |||||||||||||||||||   ||||||   | |||||||| |||||
seq2  AACGGCCTGTTGGACCACATACTGCACAACTTTCT-GTCTGGAGCTTCAT  697

seq1  CATCTTGTTTCTCTCGGGCCTGGGCTCCAGATATTATCTTCCATAGCA-T  749
      ||||||||||||||||||||||||||||||||||||||||| | |||| |
seq2  CATCTTGTTTCTCTCGGGCCTGGGCTCCAGATATTATCTTCTACAGCATT  747

seq1  CTCAAACAAAACCCACTCTAGAAACAGTGTCCC-AGGTTTCCCAAGCACT  798
       ||| |||||| |  ||||||||||||||||||   ||| |||||| |||
seq2  TTCATACAAAAGCTTCTCTAGAAACAGTGTCCCTCCGTTCCCCAAGAACT  797

seq1  AAATCCAGAAGACCATTTAACTAAAAC-ATTGTAAGTTAACCCGACC-TT  846
      ||||||||||||||||| ||||||||| ||||||| ||||||||||| ||
seq2  AAATCCAGAAGACCATTCAACTAAAACGATTGTAAATTAACCCGACCTTT  847

seq1  CAAGTAAGTGGGGATTCCG-TTGCACCCTCTCTAGTAGTGTTTGATGACA  895
      || |||||||||||||| | ||||||| |||||||||| |||||||||| 
seq2  CATGTAAGTGGGGATTCTGTTTGCACCGTCTCTAGTAGCGTTTGATGACG  897

seq1  TTACTCTA-CAATGTCACTCACTC-TCCAGGATGCTGCTGTAG-AAGCCT  942
       ||||||| ||||||||||||||| |||||||||||||||||| ||||||
seq2  ATACTCTAGCAATGTCACTCACTCTTCCAGGATGCTGCTGTAGAAAGCCT  947

seq1  TTCCC-AAACTCCCTCTGCACACCCAGGAATTTGTCATAGAGAATATACC  991
      ||||| ||||||||||||||||||  | ||||||||||||||||||||||
seq2  TTCCCAAAACTCCCTCTGCACACCAGGAAATTTGTCATAGAGAATATACC  997

seq1  CTTG-TTACAACCCATGTAGACAAACCCT-CAAGTAATAGAGGGGCCAAA  1039
      |||| |||||||||||||| ||||||||| || ||||| |||||||||| 
seq2  CTTGTTTACAACCCATGTATACAAACCCTCCAGGTAAT-GAGGGGCCAAT  1046

seq1  CTAGAGAAGAAAAAAGAACAACAAAATAAAGTGT-GTTCTG-ACAAGAAT  1087
      ||||||||||| |||||| | || ||  |||||| |||||| ||| || |
seq2  CTAGAGAAGAATAAAGAA-ACCACAAATAAGTGTGGTTCTGTACAGGATT  1095

seq1  AAAATAGAACTCAAAGGCTAATTGAATGC  1116
        | ||| |||||||||||||||||||||
seq2  --ACTAG-ACTCAAAGGCTAATTGAATGC  1121

seq1: chr10_59715308_59715965
seq2: B6Ng01-228I18.g_141_797 (reverse)

seq1  GTGTGTGTGTTTGTGTGTGTGTGTGCATGTGCCAACTGTGCACAAGTATG  50
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGTGTGTGTTTGTGTGTGTGTGTGCATGTGCCAAATGTGCACAAGTATG  50

seq1  GCCCCACTCAGGCCTAGGGCAATGAGGGTGCTCCTGCTCCGGCTAGGGGA  100
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCCCCACTCAGGCCTAGGGCAATGAGGGTGCT-CTGCTCCGGCTAGGGGA  99

seq1  ACCCATCACCCCTGCCTGTCCCATGGGTAAGGTTTCTGATCCCTTTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCACCCCTGCCTGTCCCATGGGTAAGGTTTCTGATCCCTTTTCTC  149

seq1  AGGAAAGCTGTAGTGCAGGTGACTGGCTTTGCACACAGTAGTAATTTCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCTGTAGTGCAGGTGACTGGCTTTGCACACAGTAGTAATTTCGA  199

seq1  AAGAGGATGGATATTGCTCAGGGCTACAGGCTCAAGGAGTCTTGTGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGATGGATATTGCTCAGGGCTACAGGCTCAAGGAGTCTTGTGCAAT  249

seq1  GTTGGGGGCAGGGGAGGAGGTGGTGGCCAGAAACTGTTGGTGTCGCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGGCAGGGGAGGAGGTGGTGGCCAGAAACTGTTGGTGTCGCTTCC  299

seq1  CTAAGCATCCTGGGCTGCTCTCCCCAGCTTAACCTCCAAAAATGCCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCATCCTGGGCTGCTCTCCCCAGCTTAACCTCCAAAAATGCCCTGT  349

seq1  GTGGGGGAACAGAGGTCAGGAGGTGGCTCAGCTTTTTGTTGGGCGAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGAACAGAGGTCAGGAGGTGGCTCAGCTTTTTGTTGGGCGAGGAT  399

seq1  CCAGGAAGCAGCAGACCAAAGACTGATTTAACCAATCAGTTGGTTGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAGCAGCAGACCAAAGACTGATTTAACCAATCAGTTGGTTGACTG  449

seq1  ATTGACTGATTGGGTTTTGAGATAGGGTTTTGGGTGGCTGTGGCTGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTGATTGGGTTTTGAGATAGGGTTTTGGGTGGCTGTGGCTGGCCA  499

seq1  CAGCTTCTCTAGGTAGCCAAAGCAGGCCCTGAGCTCACAGAGACCCACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTCTAGGTAGCCAAAGCAGGCCCTGAGCTCACAGAGACCCACCT  549

seq1  ACCTCTGCCTCTGGAATGCTGGGATTAAAGGCATGTATATCACCACTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCCTCTGGAATGCTGGGATTAAAGGCATGTATATCACCACTGCC  599

seq1  CAGACCTATTTATTATTTACTGAGACTCCCTCATTCTGTAGCCCAGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTATTTATTATTTACTGAGACTCCCTCATTCTGTAGCCCAGGCTG  649

seq1  GCCTGAAA  658
      ||||||||
seq2  GCCTGAAA  657