BAC Information

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BAC

Clone NameB6Ng01-230A06
Chromosome10 (Build37)
Map Location 80,897,833 - 81,098,531
singlet/doubletdoublet
Overlap geneBrunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24
Upstream geneOnecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic
Downstream geneLOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230A06.bB6Ng01-230A06.g
ACCGA042992GA042993
length1,099954
definitionB6Ng01-230A06.b B6Ng01-230A06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,097,447 - 81,098,531)(80,897,833 - 80,898,784)
sequence
gaattcagtatagacagggaatggacatcaggacctccaagagttgcttc
agacactctgggtgcccgtacttggctgccaggtgaagggcattgtaacc
tgaggggagaagagaagaggcgtgtcctccaggtattctcagctgcctcc
caagcctgaatgtccaaactcagctacttcttaaaactgtgctgttccca
gagggctttttattgctatattcatttgctatctttgtttttgaaataat
ttaaaaatcctaaaactcacaggatctctctgccatctggtgcggcgatc
aaaggggtcttttacttttatttttaacaggttctcatatagcccaggtt
ggtctccagttcatatgtagctgaggatcgccttgaactcccgatcctcg
tacttccacacaagtgctgggatggcaggtgtgcgccagcagttcagagg
acagaccttaggatttccctcatgtttggtgaatgtcctacctactgagc
tacagccccactgtggacagtgagctcccactgtggacagtgagcttcca
cagttggacctgtggtccctgctctgcacagctgatgcagccctgccatc
cacccagggacggtccttccataagtacctgctccatccgtgctcatgac
atcggcaccttgagccagcatcacttccagacaccccgccgcacccctca
tggctgctaagtggaacctagaggcacgagtcaggggtcaaccccagaag
aatgtccaaagccaccccagccccagggctttggacacttcacgcagact
tgccctcggggtccagttttgttaggcaccagcccccttgtgggcgatca
aacgaggccactctggccacatcgttgttctccacttgcctggaagcagt
cgctggtcactttttgccccagtccttgccctgcggtggcacacccagag
gtgcgagggacttgagtgggtcgatgtcctttcccccaccaaggaaacaa
ggggcaagtgcttccgggcttctccccaacccaccccttgagcactgctg
gcgcttgcttctggcttgcgggttttgggataggcacctgccacagggt
gaattctcaccgtgtgtgctttttcatctgccttgtttggacaagcctga
catgcaattgccactgaataattgcgagtcaggcacataggtggccccag
ctatgtgatcatctcatcagggatgcagttggtgataaatagtcacctaa
ataatcacacttcgaggaggctggacctcaggactatcaaacatgcttcc
tctttcagggcaaactgaggctcagacggggctcctgatgccttgcttgg
aacagtggaatggccagagcactgagggtggacggaagccccctgtcctc
tagaggcctggcggggagtgttctaaccctatagccctttaagggacgat
taaaaagtggcaggctgctagcgctgttctagagctggaaacaaacaagg
gcagggatgggtttctgcaatgccagaaacccagcttgtcccagaggcag
attagcttgggatttcctaggctgggaaagggggcagatccctggcccct
cctccgctctgccagcctgccctcctccatctttggcagtggatatttgt
gcagaaggctgagtccagctggccaggtgccaggtaggaaggctgggcac
aagagcagggtgctctgggaactgtttcagctggcttgttagcatgcagg
gccttcggaacaaactttggggactttgaatcaacccaagactgaagtcc
ttgagaaatggatttgcaagaggtgggcatgtaggtaatgaattcaaaga
acctagtataaggtaggcgctaaatgattgcatatacgatatgtagttgg
cactaaataatagcacaacccagaagcttgaattgggattagaaacccaa
atgtaggtttggtggccacagggacctcaactgctgcaatgcagcgaatg
ccatcccactcatttacctgtgttgactgagaaatccttgaatgtgcaag
ggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_81097447_81098531
seq2: B6Ng01-230A06.b_47_1145 (reverse)

seq1  ACCCTGTGGCCGGTGCCCTATCCCAAAACCCGC-AGCCAGAGGCAGGCGC  49
      |||||||||| |||| ||||||||||||||||| ||||||| ||| ||||
seq2  ACCCTGTGGCAGGTG-CCTATCCCAAAACCCGCAAGCCAGAAGCAAGCGC  49

seq1  CAGGCAAGTGCTC-AGGGGTGGG-TGGGGAG-AGCCCGG-AGCAACTGCC  95
      |||   ||||||| ||||||||| ||||||| ||||||| ||||  ||||
seq2  CAG--CAGTGCTCAAGGGGTGGGTTGGGGAGAAGCCCGGAAGCACTTGCC  97

seq1  CCT--GTTCCTTGGT-GGGGAAAGGACATCGACCCACTC-AGTCCCTCGC  141
      |||   ||||||||| ||||||||||||||||||||||| ||||||||||
seq2  CCTTGTTTCCTTGGTGGGGGAAAGGACATCGACCCACTCAAGTCCCTCGC  147

seq1  ACCTCTGGGTGTGCCACCGCAGGGCCAAGACTGGGGC-AAAAGTGACCAG  190
      ||||||||||||||||||||||||| | ||||||||| ||||||||||||
seq2  ACCTCTGGGTGTGCCACCGCAGGGCAAGGACTGGGGCAAAAAGTGACCAG  197

seq1  CGACTGC-TCCAGGC-AGTGGAGAACAACGATGTGGCCAGAGTGGCCTCG  238
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  CGACTGCTTCCAGGCAAGTGGAGAACAACGATGTGGCCAGAGTGGCCTCG  247

seq1  -TTGATCGCCCACAA-GGGGCTGGTGCCT-ACAAAACTGGACCCCGAGGG  285
       |||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  TTTGATCGCCCACAAGGGGGCTGGTGCCTAACAAAACTGGACCCCGAGGG  297

seq1  CAAGTCTGCGTG-AGTGTCC-AAGCCCTGGGGCTGGGGTGGCTTTGGACA  333
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  CAAGTCTGCGTGAAGTGTCCAAAGCCCTGGGGCTGGGGTGGCTTTGGACA  347

seq1  TTCTTCTGGGGTTGACCCCTGACTCGTGCCTCTAGGTTCCACTTAGCAGC  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGGGGTTGACCCCTGACTCGTGCCTCTAGGTTCCACTTAGCAGC  397

seq1  CATGAGGGGTGCGGCGGGGTGTCTGGAAGTGATGCTGGCTCAAGGTGCCG  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGGGTGCGGCGGGGTGTCTGGAAGTGATGCTGGCTCAAGGTGCCG  447

seq1  ATGTCATGAGCACGGATGGAGCAGGTACTTATGGAAGGACCGTCCCTGGG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATGAGCACGGATGGAGCAGGTACTTATGGAAGGACCGTCCCTGGG  497

seq1  TGGATGGCAGGGCTGCATCAGCTGTGCAGAGCAGGGACCACAGGTCCAAC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGCAGGGCTGCATCAGCTGTGCAGAGCAGGGACCACAGGTCCAAC  547

seq1  TGTGGAAGCTCACTGTCCACAGTGGGAGCTCACTGTCCACAGTGGGGCTG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGCTCACTGTCCACAGTGGGAGCTCACTGTCCACAGTGGGGCTG  597

seq1  TAGCTCAGTAGGTAGGACATTCACCAAACATGAGGGAAATCCTAAGGTCT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAGTAGGTAGGACATTCACCAAACATGAGGGAAATCCTAAGGTCT  647

seq1  GTCCTCTGAACTGCTGGCGCACACCTGCCATCCCAGCACTTGTGTGGAAG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGAACTGCTGGCGCACACCTGCCATCCCAGCACTTGTGTGGAAG  697

seq1  TACGAGGATCGGGAGTTCAAGGCGATCCTCAGCTACATATGAACTGGAGA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAGGATCGGGAGTTCAAGGCGATCCTCAGCTACATATGAACTGGAGA  747

seq1  CCAACCTGGGCTATATGAGAACCTGTTAAAAATAAAAGTAAAAGACCCCT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTGGGCTATATGAGAACCTGTTAAAAATAAAAGTAAAAGACCCCT  797

seq1  TTGATCGCCGCACCAGATGGCAGAGAGATCCTGTGAGTTTTAGGATTTTT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCGCCGCACCAGATGGCAGAGAGATCCTGTGAGTTTTAGGATTTTT  847

seq1  AAATTATTTCAAAAACAAAGATAGCAAATGAATATAGCAATAAAAAGCCC  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTCAAAAACAAAGATAGCAAATGAATATAGCAATAAAAAGCCC  897

seq1  TCTGGGAACAGCACAGTTTTAAGAAGTAGCTGAGTTTGGACATTCAGGCT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAACAGCACAGTTTTAAGAAGTAGCTGAGTTTGGACATTCAGGCT  947

seq1  TGGGAGGCAGCTGAGAATACCTGGAGGACACGCCTCTTCTCTTCTCCCCT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAGCTGAGAATACCTGGAGGACACGCCTCTTCTCTTCTCCCCT  997

seq1  CAGGTTACAATGCCCTTCACCTGGCAGCCAAGTACGGGCACCCAGAGTGT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTACAATGCCCTTCACCTGGCAGCCAAGTACGGGCACCCAGAGTGT  1047

seq1  CTGAAGCAACTCTTGGAGGTCCTGATGTCCATTCCCTGTCTATACTGAAT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCAACTCTTGGAGGTCCTGATGTCCATTCCCTGTCTATACTGAAT  1097

seq1  TC  1085
      ||
seq2  TC  1099

seq1: chr10_80897833_80898784
seq2: B6Ng01-230A06.g_70_1023

seq1  GAATTCTCACCGTGTG-GCTTTTTCATCTGCCTTGTTTGGACAAGCCTGA  49
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCGTGTGTGCTTTTTCATCTGCCTTGTTTGGACAAGCCTGA  50

seq1  CATGCAATTGCCACTGAATAATTGCGAGTCAGGCACATAGGTGGCCCCAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATTGCCACTGAATAATTGCGAGTCAGGCACATAGGTGGCCCCAG  100

seq1  CTATGTGATCATCTCATCAGGGATGCAGTTGGTGATAAATAGTCACCTAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGATCATCTCATCAGGGATGCAGTTGGTGATAAATAGTCACCTAA  150

seq1  ATAATCACACTTCGAGGAGGCTGGACCTCAGGACTATCAAACATGCTTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCACACTTCGAGGAGGCTGGACCTCAGGACTATCAAACATGCTTCC  200

seq1  TCTTTCAGGGCAAACTGAGGCTCAGACGGGGCTCCTGATGCCTTGCTTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGGGCAAACTGAGGCTCAGACGGGGCTCCTGATGCCTTGCTTGG  250

seq1  AACAGTGGAATGGCCAGAGCACTGAGGGTGGACGGAAGCCCCCTGTCCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGGAATGGCCAGAGCACTGAGGGTGGACGGAAGCCCCCTGTCCTC  300

seq1  TAGAGGCCTGGCGGGGAGTGTTCTAACCCTATAGCCCTTTAAGGGACGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCCTGGCGGGGAGTGTTCTAACCCTATAGCCCTTTAAGGGACGAT  350

seq1  TAAAAAGTGGCAGGCTGCTAGCGCTGTTCTAGAGCTGGAAACAAACAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTGGCAGGCTGCTAGCGCTGTTCTAGAGCTGGAAACAAACAAGG  400

seq1  GCAGGGATGGGTTTCTGCAATGCCAGAAACCCAGCTTGTCCCAGAGGCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGATGGGTTTCTGCAATGCCAGAAACCCAGCTTGTCCCAGAGGCAG  450

seq1  ATTAGCTTGGGATTTCCTAGGCTGGGAAAGGGGGCAGATCCCTGGCCCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTTGGGATTTCCTAGGCTGGGAAAGGGGGCAGATCCCTGGCCCCT  500

seq1  CCTCCGCTCTGCCAGCCTGCCCTCCTCCATCTTTGGCAGTGGATATTTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGCTCTGCCAGCCTGCCCTCCTCCATCTTTGGCAGTGGATATTTGT  550

seq1  GCAGAAGGCTGAGTCCAGCTGGCCAGGTGCCAGGTAGGAAGGCTGGGCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGGCTGAGTCCAGCTGGCCAGGTGCCAGGTAGGAAGGCTGGGCAC  600

seq1  AAGAGCAGGGTGCTCTGGGAACTGTTTCAGCTGGCTTGTTAGCATGCAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGGGTGCTCTGGGAACTGTTTCAGCTGGCTTGTTAGCATGCAGG  650

seq1  GCCTTCGGAACAAACTTTGGGGACTTTGAATCAACCCAAGACTGAAGTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCGGAACAAACTTTGGGGACTTTGAATCAACCCAAGACTGAAGTCC  700

seq1  TTGAGAAATGGATTTGCAAGAGGTGGGCATGTAGGTAATGAATTCAAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAATGGATTTGCAAGAGGTGGGCATGTAGGTAATGAATTCAAAGA  750

seq1  ACCTAGTATAAGGTAGGCGCTAAATGATTGCATATACGATATGTAGTTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTATAAGGTAGGCGCTAAATGATTGCATATACGATATGTAGTTGG  800

seq1  CACTAAATAATAGCACAACCCAGAAGCTTGAATTGGGATTAGAAACCCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAATAATAGCACAACCCAGAAGCTTGAATTGGGATTAGAAACCCAA  850

seq1  ATGTAGGTTT-GTGGCCACAGGGACCTCAACTGCTGCAATGCAGGCGAAT  898
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  ATGTAGGTTTGGTGGCCACAGGGACCTCAACTGCTGCAATGCA-GCGAAT  899

seq1  GCCATCCCACTCAGTTACCTGTG-TGACTGAGAAATCCTTGAGTGTGCGA  947
      ||||||||||||| ||||||||| |||||||||||||||||| ||||| |
seq2  GCCATCCCACTCATTTACCTGTGTTGACTGAGAAATCCTTGAATGTGCAA  949

seq1  GGGTA  952
      |||||
seq2  GGGTA  954