BAC Information

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BAC

Clone NameB6Ng01-230H12
Chromosome10 (Build37)
Map Location 21,338,346 - 21,510,375
singlet/doubletdoublet
Overlap gene1700020N01Rik, EG432436, LOC100039936
Upstream genePde7b, LOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906
Downstream geneLOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230H12.bB6Ng01-230H12.g
ACCGA043325GA043326
length5221,173
definitionB6Ng01-230H12.b B6Ng01-230H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,338,346 - 21,338,873)(21,509,216 - 21,510,375)
sequence
tgccatttttttctaggtcaacactatacaagttacctaggttaatagga
aattaacaatagtgacctgtcataacatacttattagttaatatatagtg
atgagagaagaaatataatgatgttaatttcttgtaaacatttcataatt
ttattttaccaccaccaagagaacatacactttattatatctttcaagta
atgttgaacattcacacttaggtagtattctgcctagtttgtagccttta
gtagtccagaggatgctcagagattcaaagtatactctaaatttagtcca
agttttaaaactgaaaatgaaagtgcagtcctcggccaactattgatctc
ccacttagagaatgaaaacaaaggcaggcatctccagctgcttctcctag
cactggaattcatgcccaggatgacacagacatcagaaatgcttgtttaa
ctctgtagatgacatcactctctctctctctctctctctctctctctctc
tctctctctctctctctctctc
gaattccttaactggaactcagcttagactaattgggtagtgttctgact
tagaaaacacattgttcgtgattctgctgttggtttccaagggagtccca
ggaagggactaaggctcataaacatgactagttggtgctcgtgattcatg
tagtcaaaccgggaaggaagatctgaaggcaagcaagcctccagaggtct
cagccatcgcagttgcccctggcatgcagatcatttcatcctgctgactc
atagccctgtggaactttcagggctctgttgccgtttgactgccgtgcct
cccactgtcccagagcttgccagtcatcccgcttccagctcagtttatca
gcctataactaatgagtgtaaatattgacttacggctgtgtggtagtgtg
atccctcggccatgtaaaatgatacacttaagaagcacgcagaaaatatt
gtcaggttccagcccttgaacgaggcagtgtgcaaggaaggggacgagtg
tggacgaacagcacaggttaagagcacctgccacctgaaccagctgctcc
gttaagagagttgttttcaaaggcagaagacaggagtctaagttgcttca
gtgtctattggcccatccaggcatgcagggaaatggttatgtgacctgct
tttggagtgtccctgagtgtgctgtgtgcggcggtggcagctgtttgtca
ctgatggatgggctatcccccgcctcctgtgcttcaatgtcctcacctga
atgaggactgatgattgtcaaggccaaataacatgctcaaggggacttct
ggggtggatagcgctcaccacttgagggtaatgagcagacatgcacctga
tagggcagatttggaggcaagttttctgactgatctcccaatcttttcag
aagtcgctttgttttaattttctcaatcccctagagactggagtttgagt
ttctatttgtcttcccctcccccgccaccctacccccacgccagaatctg
gaagctcacaacagcctccacatactgtgaagaaaaacctgattgaagga
acatgtttctttaagaagttttcttcttctgaaagcattttgaaatttaa
aggtaatattctttccccaccagaaaccaggtttggtcaatggaaggtct
ttcccaaggctggagccagctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_21338346_21338873
seq2: B6Ng01-230H12.b_44_571

seq1  GAATTCTGCCATTTTTTTCTAGGTCAACACTATACAAGTTACCTAGGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCATTTTTTTCTAGGTCAACACTATACAAGTTACCTAGGTTA  50

seq1  ATAGGAAATTAACAATAGTGACCTGTCATAACATACTTATTAGTTAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAATTAACAATAGTGACCTGTCATAACATACTTATTAGTTAATAT  100

seq1  ATAGTGATGAGAGAAGAAATATAATGATGTTAATTTCTTGTAAACATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGATGAGAGAAGAAATATAATGATGTTAATTTCTTGTAAACATTTC  150

seq1  ATAATTTTATTTTACCACCACCAAGAGAACATACACTTTATTATATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTATTTTACCACCACCAAGAGAACATACACTTTATTATATCTTT  200

seq1  CAAGTAATGTTGAACATTCACACTTAGGTAGTATTCTGCCTAGTTTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAATGTTGAACATTCACACTTAGGTAGTATTCTGCCTAGTTTGTAG  250

seq1  CCTTTAGTAGTCCAGAGGATGCTCAGAGATTCAAAGTATACTCTAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGTAGTCCAGAGGATGCTCAGAGATTCAAAGTATACTCTAAATTT  300

seq1  AGTCCAAGTTTTAAAACTGAAAATGAAAGTGCAGTCCTCGGCCAACTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAGTTTTAAAACTGAAAATGAAAGTGCAGTCCTCGGCCAACTATT  350

seq1  GATCTCCCACTTAGAGAATGAAAACAAAGGCAGGCATCTCCAGCTGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCCACTTAGAGAATGAAAACAAAGGCAGGCATCTCCAGCTGCTTC  400

seq1  TCCTAGCACTGGAATTCATGCCCAGGATGACACAGACATCAGAAATGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCACTGGAATTCATGCCCAGGATGACACAGACATCAGAAATGCTT  450

seq1  GTTTAACTCTGTAGATGACATCACTCTCTCTCTCTCTCTCTCTCTCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACTCTGTAGATGACATCACTCTCTCTCTCTCTCTCTCTCTCTCTC  500

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTC  528
      ||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTC  528

seq1: chr10_21509216_21510375
seq2: B6Ng01-230H12.g_70_1242 (reverse)

seq1  CCAGCTGGCT-CAGCCTGGGGAAGGACTCTCCATGCAC--AACCTTGTTT  47
      |||||||||| |||||| ||||| |||  |||||  ||  ||||| ||||
seq2  CCAGCTGGCTCCAGCCTTGGGAAAGACCTTCCATTGACCAAACCTGGTTT  50

seq1  CTGTTGGGGGAAAGATTATTACTTTTAATTTCAAAAATGC-TTCAG-AGA  95
      ||| | ||||||||| |||||| ||||| ||  ||||||| ||||| |||
seq2  CTGGT-GGGGAAAGAATATTACCTTTAAATTTCAAAATGCTTTCAGAAGA  99

seq1  AGAAAAC-TCTT-AAGAAACCTGTTCCTCAAATCAGGTTTT--CTCACAG  141
      ||||||| |||| ||||||| |||||||  |||||||||||   ||||||
seq2  AGAAAACTTCTTAAAGAAACATGTTCCTTCAATCAGGTTTTTCTTCACAG  149

seq1  TATGT-GAGGCTG-TGTGAGCTTCCAGATTCTGGGCGTGGGGGTAGGGTG  189
      ||||| ||||||| |||||||||||||||||| |||||||||||||||||
seq2  TATGTGGAGGCTGTTGTGAGCTTCCAGATTCT-GGCGTGGGGGTAGGGTG  198

seq1  --CGGGGAGGGGAAGAC-AATAGAAACTCAAACTCCAGTCTCTAGGGGAT  236
         |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCGGGGGAGGGGAAGACAAATAGAAACTCAAACTCCAGTCTCTAGGGGAT  248

seq1  TGAGAAAATTAAAACAAAGCGACTTCTGAAAAGATTGGGAGATCAGTCAG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAATTAAAACAAAGCGACTTCTGAAAAGATTGGGAGATCAGTCAG  298

seq1  AAAACTTGCCTCCAAATCTGCCCTATCAGGTGCATGTCTGCTCATTACCC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGCCTCCAAATCTGCCCTATCAGGTGCATGTCTGCTCATTACCC  348

seq1  TCAAGTGGTGAGCGCTATCCACCCCAGAAGT-CCCTTGAGCATGTTATTT  385
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCAAGTGGTGAGCGCTATCCACCCCAGAAGTCCCCTTGAGCATGTTATTT  398

seq1  GGCCTTGACAATCATCAGTCCTCATTCAGGTGAGGACATTGAAGCACAGG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGACAATCATCAGTCCTCATTCAGGTGAGGACATTGAAGCACAGG  448

seq1  AGGCGGGGGATAGCCCATCCATCAGTGACAAACAGCTGCCACCGCCGCAC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGGGGATAGCCCATCCATCAGTGACAAACAGCTGCCACCGCCGCAC  498

seq1  ACAGCACACTCAGGGACACTCCAAAAGCAGGTCACATAACCATTTCCCTG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACACTCAGGGACACTCCAAAAGCAGGTCACATAACCATTTCCCTG  548

seq1  CATGCCTGGATGGGCCAATAGACACTGAAGCAACTTAGACTCCTGTCTTC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGGATGGGCCAATAGACACTGAAGCAACTTAGACTCCTGTCTTC  598

seq1  TGCCTTTGAAAACAACTCTCTTAACGGAGCAGCTGGTTCAGGTGGCAGGT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGAAAACAACTCTCTTAACGGAGCAGCTGGTTCAGGTGGCAGGT  648

seq1  GCTCTTAACCTGTGCTGTTCGTCCACACTCGTCCCCTTCCTTGCACACTG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAACCTGTGCTGTTCGTCCACACTCGTCCCCTTCCTTGCACACTG  698

seq1  CCTCGTTCAAGGGCTGGAACCTGACAATATTTTCTGCGTGCTTCTTAAGT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTTCAAGGGCTGGAACCTGACAATATTTTCTGCGTGCTTCTTAAGT  748

seq1  GTATCATTTTACATGGCCGAGGGATCACACTACCACACAGCCGTAAGTCA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATTTTACATGGCCGAGGGATCACACTACCACACAGCCGTAAGTCA  798

seq1  ATATTTACACTCATTAGTTATAGGCTGATAAACTGAGCTGGAAGCGGGAT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACACTCATTAGTTATAGGCTGATAAACTGAGCTGGAAGCGGGAT  848

seq1  GACTGGCAAGCTCTGGGACAGTGGGAGGCACGGCAGTCAAACGGCAACAG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCAAGCTCTGGGACAGTGGGAGGCACGGCAGTCAAACGGCAACAG  898

seq1  AGCCCTGAAAGTTCCACAGGGCTATGAGTCAGCAGGATGAAATGATCTGC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGAAAGTTCCACAGGGCTATGAGTCAGCAGGATGAAATGATCTGC  948

seq1  ATGCCAGGGGCAACTGCGATGGCTGAGACCTCTGGAGGCTTGCTTGCCTT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGGGGCAACTGCGATGGCTGAGACCTCTGGAGGCTTGCTTGCCTT  998

seq1  CAGATCTTCCTTCCCGGTTTGACTACATGAATCACGAGCACCAACTAGTC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTCCTTCCCGGTTTGACTACATGAATCACGAGCACCAACTAGTC  1048

seq1  ATGTTTATGAGCCTTAGTCCCTTCCTGGGACTCCCTTGGAAACCAACAGC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATGAGCCTTAGTCCCTTCCTGGGACTCCCTTGGAAACCAACAGC  1098

seq1  AGAATCACGAACAATGTGTTTTCTAAGTCAGAACACTACCCAATTAGTCT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCACGAACAATGTGTTTTCTAAGTCAGAACACTACCCAATTAGTCT  1148

seq1  AAGCTGAGTTCCAGTTAAGGAATTC  1160
      |||||||||||||||||||||||||
seq2  AAGCTGAGTTCCAGTTAAGGAATTC  1173